data_5DWK
#
_model_server_result.job_id            pQaniBk0fUP18v69qAfaaA 
_model_server_result.datetime_utc      '2024-11-04 22:44:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dwk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":203}' 
#
_entry.id    5DWK 
#
_exptl.entry_id    5DWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DWK 
_cell.length_a            75.29 
_cell.length_b            91.57 
_cell.length_c            143.72 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,G,H,I,J,K,L,M,N,O,W,X,Y,AA 1 1 
C,E,F,P,Q,R,S,T,U,V,Z,BA,CA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 N N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 116 A ASP 107 1_555 O NA NA . B NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc2 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc3 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 C OE1 GLU 37 C GLU 28 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc5 C OE1 GLU 85 C GLU 76 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc6 T ZN ZN . C ZN 205 1_555 V O ACT . C ACT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     5DWK 
_atom_sites.fract_transf_matrix[1][1]    0.013282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006958 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 78N A 1 201 1122 78N 78N . 
H 2 78N A 1 202 1123 78N 78N . 
I 2 78N A 1 203 1122 78N 78N . 
J 3 78M A 1 204 1127 78M 78M . 
K 2 78N B 1 201 1122 78N 78N . 
L 2 78N B 1 202 1123 78N 78N . 
M 2 78N B 1 203 1124 78N 78N . 
N 3 78M B 1 204 1126 78M 78M . 
O 4 NA B 1 205 1 NA NA . 
P 3 78M C 1 201 1125 78M 78M . 
Q 3 78M C 1 202 1125 78M 78M . 
R 3 78M C 1 203 1126 78M 78M . 
S 3 78M C 1 204 1128 78M 78M . 
T 5 ZN C 1 205 1 ZN ZN . 
U 6 CIT C 1 206 1 CIT FLC . 
V 7 ACT C 1 207 1 ACT ACT . 
W 2 78N D 1 201 1123 78N 78N . 
X 8 HOH A 1 301 54 HOH HOH . 
X 8 HOH A 2 302 25 HOH HOH . 
X 8 HOH A 3 303 2 HOH HOH . 
X 8 HOH A 4 304 23 HOH HOH . 
X 8 HOH A 5 305 11 HOH HOH . 
X 8 HOH A 6 306 5 HOH HOH . 
X 8 HOH A 7 307 31 HOH HOH . 
X 8 HOH A 8 308 14 HOH HOH . 
X 8 HOH A 9 309 56 HOH HOH . 
Y 8 HOH B 1 301 28 HOH HOH . 
Y 8 HOH B 2 302 29 HOH HOH . 
Y 8 HOH B 3 303 1 HOH HOH . 
Y 8 HOH B 4 304 7 HOH HOH . 
Y 8 HOH B 5 305 33 HOH HOH . 
Z 8 HOH C 1 301 17 HOH HOH . 
Z 8 HOH C 2 302 37 HOH HOH . 
Z 8 HOH C 3 303 16 HOH HOH . 
Z 8 HOH C 4 304 34 HOH HOH . 
AA 8 HOH D 1 301 51 HOH HOH . 
BA 8 HOH E 1 201 9 HOH HOH . 
BA 8 HOH E 2 202 12 HOH HOH . 
BA 8 HOH E 3 203 27 HOH HOH . 
BA 8 HOH E 4 204 43 HOH HOH . 
BA 8 HOH E 5 205 4 HOH HOH . 
BA 8 HOH E 6 206 8 HOH HOH . 
BA 8 HOH E 7 207 3 HOH HOH . 
BA 8 HOH E 8 208 26 HOH HOH . 
BA 8 HOH E 9 209 10 HOH HOH . 
BA 8 HOH E 10 210 46 HOH HOH . 
CA 8 HOH F 1 201 41 HOH HOH . 
CA 8 HOH F 2 202 6 HOH HOH . 
CA 8 HOH F 3 203 39 HOH HOH . 
CA 8 HOH F 4 204 52 HOH HOH . 
CA 8 HOH F 5 205 15 HOH HOH . 
CA 8 HOH F 6 206 19 HOH HOH . 
CA 8 HOH F 7 207 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . R 3 74.089 63.669 54.314 1 99.09 ? O21 78M 203 C 1 
HETATM 2 C C20 78M . . . R 3 73.611 63.852 55.617 1 85.46 ? C20 78M 203 C 1 
HETATM 3 C C18 78M . . . R 3 73.626 62.533 56.391 1 85.26 ? C18 78M 203 C 1 
HETATM 4 O O19 78M . . . R 3 72.459 62.448 57.155 1 102.16 ? O19 78M 203 C 1 
HETATM 5 C C17 78M . . . R 3 74.822 62.479 57.339 1 81.59 ? C17 78M 203 C 1 
HETATM 6 O O2 78M . . . R 3 75.65 61.397 57.026 1 73.15 ? O2 78M 203 C 1 
HETATM 7 C C1 78M . . . R 3 75.499 60.316 57.897 1 67.05 ? C1 78M 203 C 1 
HETATM 8 O O1 78M . . . R 3 75.117 60.512 59.001 1 74.56 ? O1 78M 203 C 1 
HETATM 9 C C2 78M . . . R 3 75.805 58.9 57.405 1 69.87 ? C2 78M 203 C 1 
HETATM 10 C C3 78M . . . R 3 76.427 58.044 58.506 1 69.8 ? C3 78M 203 C 1 
HETATM 11 C C4 78M . . . R 3 75.366 57.462 59.442 1 75.64 ? C4 78M 203 C 1 
HETATM 12 C C5 78M . . . R 3 75.538 55.947 59.547 1 69.97 ? C5 78M 203 C 1 
HETATM 13 C C6 78M . . . R 3 75.198 55.481 60.961 1 74.59 ? C6 78M 203 C 1 
HETATM 14 C C7 78M . . . R 3 74.291 54.254 60.891 1 91.22 ? C7 78M 203 C 1 
HETATM 15 C C8 78M . . . R 3 74.202 53.413 61.904 1 99.41 ? C8 78M 203 C 1 
HETATM 16 C C9 78M . . . R 3 75.014 53.642 63.176 1 110.31 ? C9 78M 203 C 1 
HETATM 17 C C10 78M . . . R 3 74.327 52.969 64.365 1 111.55 ? C10 78M 203 C 1 
HETATM 18 C C11 78M . . . R 3 73.099 53.781 64.777 1 106.45 ? C11 78M 203 C 1 
HETATM 19 C C12 78M . . . R 3 73.535 55.156 65.28 1 102.93 ? C12 78M 203 C 1 
HETATM 20 C C13 78M . . . R 3 72.833 56.25 64.476 1 99.78 ? C13 78M 203 C 1 
HETATM 21 C C15 78M . . . R 3 72.969 58.652 63.792 1 99.49 ? C15 78M 203 C 1 
HETATM 22 C C14 78M . . . R 3 73.742 57.473 64.38 1 100.27 ? C14 78M 203 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           22 
#