data_5DWK # _model_server_result.job_id m3_8nRvF-Fk7lHSUEhoU3g _model_server_result.datetime_utc '2024-11-04 22:42:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":205}' # _entry.id 5DWK # _exptl.entry_id 5DWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DWK _cell.length_a 75.29 _cell.length_b 91.57 _cell.length_c 143.72 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,G,H,I,J,K,L,M,N,O,W,X,Y,AA 1 1 C,E,F,P,Q,R,S,T,U,V,Z,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 116 A ASP 107 1_555 O NA NA . B NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc2 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc3 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc4 C OE1 GLU 37 C GLU 28 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc5 C OE1 GLU 85 C GLU 76 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc6 T ZN ZN . C ZN 205 1_555 V O ACT . C ACT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DWK _atom_sites.fract_transf_matrix[1][1] 0.013282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78N A 1 201 1122 78N 78N . H 2 78N A 1 202 1123 78N 78N . I 2 78N A 1 203 1122 78N 78N . J 3 78M A 1 204 1127 78M 78M . K 2 78N B 1 201 1122 78N 78N . L 2 78N B 1 202 1123 78N 78N . M 2 78N B 1 203 1124 78N 78N . N 3 78M B 1 204 1126 78M 78M . O 4 NA B 1 205 1 NA NA . P 3 78M C 1 201 1125 78M 78M . Q 3 78M C 1 202 1125 78M 78M . R 3 78M C 1 203 1126 78M 78M . S 3 78M C 1 204 1128 78M 78M . T 5 ZN C 1 205 1 ZN ZN . U 6 CIT C 1 206 1 CIT FLC . V 7 ACT C 1 207 1 ACT ACT . W 2 78N D 1 201 1123 78N 78N . X 8 HOH A 1 301 54 HOH HOH . X 8 HOH A 2 302 25 HOH HOH . X 8 HOH A 3 303 2 HOH HOH . X 8 HOH A 4 304 23 HOH HOH . X 8 HOH A 5 305 11 HOH HOH . X 8 HOH A 6 306 5 HOH HOH . X 8 HOH A 7 307 31 HOH HOH . X 8 HOH A 8 308 14 HOH HOH . X 8 HOH A 9 309 56 HOH HOH . Y 8 HOH B 1 301 28 HOH HOH . Y 8 HOH B 2 302 29 HOH HOH . Y 8 HOH B 3 303 1 HOH HOH . Y 8 HOH B 4 304 7 HOH HOH . Y 8 HOH B 5 305 33 HOH HOH . Z 8 HOH C 1 301 17 HOH HOH . Z 8 HOH C 2 302 37 HOH HOH . Z 8 HOH C 3 303 16 HOH HOH . Z 8 HOH C 4 304 34 HOH HOH . AA 8 HOH D 1 301 51 HOH HOH . BA 8 HOH E 1 201 9 HOH HOH . BA 8 HOH E 2 202 12 HOH HOH . BA 8 HOH E 3 203 27 HOH HOH . BA 8 HOH E 4 204 43 HOH HOH . BA 8 HOH E 5 205 4 HOH HOH . BA 8 HOH E 6 206 8 HOH HOH . BA 8 HOH E 7 207 3 HOH HOH . BA 8 HOH E 8 208 26 HOH HOH . BA 8 HOH E 9 209 10 HOH HOH . BA 8 HOH E 10 210 46 HOH HOH . CA 8 HOH F 1 201 41 HOH HOH . CA 8 HOH F 2 202 6 HOH HOH . CA 8 HOH F 3 203 39 HOH HOH . CA 8 HOH F 4 204 52 HOH HOH . CA 8 HOH F 5 205 15 HOH HOH . CA 8 HOH F 6 206 19 HOH HOH . CA 8 HOH F 7 207 22 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x 45.877 _atom_site.Cartn_y 64.672 _atom_site.Cartn_z 77.578 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #