data_5DWK
#
_model_server_result.job_id            Jxaf1TIPet3Xx1D5bgOHfg 
_model_server_result.datetime_utc      '2024-11-04 22:39:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dwk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":206}' 
#
_entry.id    5DWK 
#
_exptl.entry_id    5DWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DWK 
_cell.length_a            75.29 
_cell.length_b            91.57 
_cell.length_c            143.72 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,G,H,I,J,K,L,M,N,O,W,X,Y,AA 1 1 
C,E,F,P,Q,R,S,T,U,V,Z,BA,CA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             U 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 116 A ASP 107 1_555 O NA NA . B NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc2 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc3 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 C OE1 GLU 37 C GLU 28 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc5 C OE1 GLU 85 C GLU 76 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc6 T ZN ZN . C ZN 205 1_555 V O ACT . C ACT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 186 n n 
C1 O2 CIT sing 187 n n 
C1 C2 CIT sing 188 n n 
O2 HO2 CIT sing 189 n n 
C2 C3 CIT sing 190 n n 
C2 H21 CIT sing 191 n n 
C2 H22 CIT sing 192 n n 
C3 O7 CIT sing 193 n n 
C3 C4 CIT sing 194 n n 
C3 C6 CIT sing 195 n n 
O7 HO7 CIT sing 196 n n 
C4 C5 CIT sing 197 n n 
C4 H41 CIT sing 198 n n 
C4 H42 CIT sing 199 n n 
C5 O3 CIT doub 200 n n 
C5 O4 CIT sing 201 n n 
O4 HO4 CIT sing 202 n n 
C6 O5 CIT doub 203 n n 
C6 O6 CIT sing 204 n n 
O6 HO6 CIT sing 205 n n 
#
_atom_sites.entry_id                     5DWK 
_atom_sites.fract_transf_matrix[1][1]    0.013282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006958 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 78N A 1 201 1122 78N 78N . 
H 2 78N A 1 202 1123 78N 78N . 
I 2 78N A 1 203 1122 78N 78N . 
J 3 78M A 1 204 1127 78M 78M . 
K 2 78N B 1 201 1122 78N 78N . 
L 2 78N B 1 202 1123 78N 78N . 
M 2 78N B 1 203 1124 78N 78N . 
N 3 78M B 1 204 1126 78M 78M . 
O 4 NA B 1 205 1 NA NA . 
P 3 78M C 1 201 1125 78M 78M . 
Q 3 78M C 1 202 1125 78M 78M . 
R 3 78M C 1 203 1126 78M 78M . 
S 3 78M C 1 204 1128 78M 78M . 
T 5 ZN C 1 205 1 ZN ZN . 
U 6 CIT C 1 206 1 CIT FLC . 
V 7 ACT C 1 207 1 ACT ACT . 
W 2 78N D 1 201 1123 78N 78N . 
X 8 HOH A 1 301 54 HOH HOH . 
X 8 HOH A 2 302 25 HOH HOH . 
X 8 HOH A 3 303 2 HOH HOH . 
X 8 HOH A 4 304 23 HOH HOH . 
X 8 HOH A 5 305 11 HOH HOH . 
X 8 HOH A 6 306 5 HOH HOH . 
X 8 HOH A 7 307 31 HOH HOH . 
X 8 HOH A 8 308 14 HOH HOH . 
X 8 HOH A 9 309 56 HOH HOH . 
Y 8 HOH B 1 301 28 HOH HOH . 
Y 8 HOH B 2 302 29 HOH HOH . 
Y 8 HOH B 3 303 1 HOH HOH . 
Y 8 HOH B 4 304 7 HOH HOH . 
Y 8 HOH B 5 305 33 HOH HOH . 
Z 8 HOH C 1 301 17 HOH HOH . 
Z 8 HOH C 2 302 37 HOH HOH . 
Z 8 HOH C 3 303 16 HOH HOH . 
Z 8 HOH C 4 304 34 HOH HOH . 
AA 8 HOH D 1 301 51 HOH HOH . 
BA 8 HOH E 1 201 9 HOH HOH . 
BA 8 HOH E 2 202 12 HOH HOH . 
BA 8 HOH E 3 203 27 HOH HOH . 
BA 8 HOH E 4 204 43 HOH HOH . 
BA 8 HOH E 5 205 4 HOH HOH . 
BA 8 HOH E 6 206 8 HOH HOH . 
BA 8 HOH E 7 207 3 HOH HOH . 
BA 8 HOH E 8 208 26 HOH HOH . 
BA 8 HOH E 9 209 10 HOH HOH . 
BA 8 HOH E 10 210 46 HOH HOH . 
CA 8 HOH F 1 201 41 HOH HOH . 
CA 8 HOH F 2 202 6 HOH HOH . 
CA 8 HOH F 3 203 39 HOH HOH . 
CA 8 HOH F 4 204 52 HOH HOH . 
CA 8 HOH F 5 205 15 HOH HOH . 
CA 8 HOH F 6 206 19 HOH HOH . 
CA 8 HOH F 7 207 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . U 6 59.661 54.188 45.254 1 206.63 ? C1 CIT 206 C 1 
HETATM 2 O O1 CIT . . . U 6 60.348 54.275 44.202 1 203.75 ? O1 CIT 206 C 1 
HETATM 3 O O2 CIT . . . U 6 58.651 53.438 45.279 1 207.98 ? O2 CIT 206 C 1 
HETATM 4 C C2 CIT . . . U 6 60.045 55.001 46.491 1 208.08 ? C2 CIT 206 C 1 
HETATM 5 C C3 CIT . . . U 6 60.748 54.139 47.541 1 206.8 ? C3 CIT 206 C 1 
HETATM 6 O O7 CIT . . . U 6 61.41 54.978 48.446 1 209.51 ? O7 CIT 206 C 1 
HETATM 7 C C4 CIT . . . U 6 61.765 53.216 46.868 1 200.89 ? C4 CIT 206 C 1 
HETATM 8 C C5 CIT . . . U 6 62.867 52.831 47.855 1 192.79 ? C5 CIT 206 C 1 
HETATM 9 O O3 CIT . . . U 6 63.425 51.706 47.769 1 183.04 ? O3 CIT 206 C 1 
HETATM 10 O O4 CIT . . . U 6 63.225 53.637 48.752 1 196.13 ? O4 CIT 206 C 1 
HETATM 11 C C6 CIT . . . U 6 59.722 53.303 48.304 1 207.62 ? C6 CIT 206 C 1 
HETATM 12 O O5 CIT . . . U 6 59.197 52.294 47.765 1 211.09 ? O5 CIT 206 C 1 
HETATM 13 O O6 CIT . . . U 6 59.403 53.621 49.48 1 204.01 ? O6 CIT 206 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#