data_5DWL # _model_server_result.job_id lsKTnSFX6pri74sKNJ1QNA _model_server_result.datetime_utc '2024-11-05 01:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5DWL # _exptl.entry_id 5DWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.6 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DWL _cell.length_a 53.076 _cell.length_b 130.871 _cell.length_c 53.063 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H29 N3 O5' _chem_comp.formula_weight 547.6 _chem_comp.id 3JX _chem_comp.mon_nstd_flag . _chem_comp.name "4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C31 3JX doub 1 n y C32 C33 3JX sing 2 n y C31 C18 3JX sing 3 n y C19 C17 3JX sing 4 n n O37 N36 3JX doub 5 n n N36 C33 3JX sing 6 n n N36 O38 3JX sing 7 n n C33 C34 3JX doub 8 n y C18 C17 3JX sing 9 n n C18 C35 3JX doub 10 n y C17 N16 3JX sing 11 n n N16 C14 3JX sing 12 n n C34 C35 3JX sing 13 n y C14 O15 3JX doub 14 n n C14 C01 3JX sing 15 n n C06 C01 3JX doub 16 n y C06 C05 3JX sing 17 n y C01 C02 3JX sing 18 n y C10 C09 3JX sing 19 n n C05 C09 3JX sing 20 n y C05 C04 3JX doub 21 n y C02 C03 3JX doub 22 n y C09 C08 3JX doub 23 n y C04 C03 3JX sing 24 n y C04 N07 3JX sing 25 n y C08 N07 3JX sing 26 n y C08 C11 3JX sing 27 n n N07 C12 3JX sing 28 n n C20 C21 3JX doub 29 n y C20 C13 3JX sing 30 n y C12 C13 3JX sing 31 n n C21 C22 3JX sing 32 n y C13 C24 3JX doub 33 n y O40 C39 3JX doub 34 n n C22 C25 3JX sing 35 n n C22 C23 3JX doub 36 n y C24 C23 3JX sing 37 n y C25 C26 3JX doub 38 n y C25 C30 3JX sing 39 n y C39 C30 3JX sing 40 n n C39 O41 3JX sing 41 n n C26 C27 3JX sing 42 n y C30 C29 3JX doub 43 n y C27 C28 3JX doub 44 n y C29 C28 3JX sing 45 n y C02 H1 3JX sing 46 n n C03 H2 3JX sing 47 n n C06 H3 3JX sing 48 n n C10 H4 3JX sing 49 n n C10 H5 3JX sing 50 n n C10 H6 3JX sing 51 n n C11 H7 3JX sing 52 n n C11 H8 3JX sing 53 n n C11 H9 3JX sing 54 n n C12 H10 3JX sing 55 n n C12 H11 3JX sing 56 n n N16 H12 3JX sing 57 n n C17 H13 3JX sing 58 n n C19 H14 3JX sing 59 n n C19 H15 3JX sing 60 n n C19 H16 3JX sing 61 n n C20 H17 3JX sing 62 n n C21 H18 3JX sing 63 n n C23 H19 3JX sing 64 n n C24 H20 3JX sing 65 n n C26 H21 3JX sing 66 n n C27 H22 3JX sing 67 n n C28 H23 3JX sing 68 n n C29 H24 3JX sing 69 n n C31 H25 3JX sing 70 n n C32 H26 3JX sing 71 n n C34 H27 3JX sing 72 n n C35 H28 3JX sing 73 n n O41 H29 3JX sing 74 n n # _atom_sites.entry_id 5DWL _atom_sites.fract_transf_matrix[1][1] 0.018841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3JX A 1 501 501 3JX 3JX . D 4 HOH A 1 601 652 HOH HOH . D 4 HOH A 2 602 638 HOH HOH . D 4 HOH A 3 603 657 HOH HOH . D 4 HOH A 4 604 607 HOH HOH . D 4 HOH A 5 605 632 HOH HOH . D 4 HOH A 6 606 618 HOH HOH . D 4 HOH A 7 607 605 HOH HOH . D 4 HOH A 8 608 625 HOH HOH . D 4 HOH A 9 609 668 HOH HOH . D 4 HOH A 10 610 669 HOH HOH . D 4 HOH A 11 611 606 HOH HOH . D 4 HOH A 12 612 604 HOH HOH . D 4 HOH A 13 613 666 HOH HOH . D 4 HOH A 14 614 603 HOH HOH . D 4 HOH A 15 615 612 HOH HOH . D 4 HOH A 16 616 646 HOH HOH . D 4 HOH A 17 617 645 HOH HOH . D 4 HOH A 18 618 643 HOH HOH . D 4 HOH A 19 619 644 HOH HOH . D 4 HOH A 20 620 660 HOH HOH . D 4 HOH A 21 621 655 HOH HOH . D 4 HOH A 22 622 673 HOH HOH . D 4 HOH A 23 623 602 HOH HOH . D 4 HOH A 24 624 650 HOH HOH . D 4 HOH A 25 625 629 HOH HOH . D 4 HOH A 26 626 615 HOH HOH . D 4 HOH A 27 627 667 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 624 HOH HOH . D 4 HOH A 30 630 631 HOH HOH . D 4 HOH A 31 631 611 HOH HOH . D 4 HOH A 32 632 637 HOH HOH . D 4 HOH A 33 633 610 HOH HOH . D 4 HOH A 34 634 654 HOH HOH . D 4 HOH A 35 635 649 HOH HOH . D 4 HOH A 36 636 665 HOH HOH . D 4 HOH A 37 637 648 HOH HOH . D 4 HOH A 38 638 651 HOH HOH . D 4 HOH A 39 639 622 HOH HOH . D 4 HOH A 40 640 663 HOH HOH . D 4 HOH A 41 641 620 HOH HOH . D 4 HOH A 42 642 658 HOH HOH . D 4 HOH A 43 643 608 HOH HOH . D 4 HOH A 44 644 662 HOH HOH . D 4 HOH A 45 645 613 HOH HOH . D 4 HOH A 46 646 659 HOH HOH . D 4 HOH A 47 647 656 HOH HOH . D 4 HOH A 48 648 601 HOH HOH . D 4 HOH A 49 649 619 HOH HOH . D 4 HOH A 50 650 639 HOH HOH . D 4 HOH A 51 651 647 HOH HOH . D 4 HOH A 52 652 640 HOH HOH . D 4 HOH A 53 653 609 HOH HOH . D 4 HOH A 54 654 617 HOH HOH . D 4 HOH A 55 655 621 HOH HOH . D 4 HOH A 56 656 633 HOH HOH . D 4 HOH A 57 657 627 HOH HOH . D 4 HOH A 58 658 614 HOH HOH . D 4 HOH A 59 659 664 HOH HOH . D 4 HOH A 60 660 636 HOH HOH . D 4 HOH A 61 661 670 HOH HOH . D 4 HOH A 62 662 641 HOH HOH . D 4 HOH A 63 663 630 HOH HOH . D 4 HOH A 64 664 653 HOH HOH . D 4 HOH A 65 665 626 HOH HOH . D 4 HOH A 66 666 634 HOH HOH . D 4 HOH A 67 667 616 HOH HOH . D 4 HOH A 68 668 635 HOH HOH . D 4 HOH A 69 669 661 HOH HOH . D 4 HOH A 70 670 642 HOH HOH . D 4 HOH A 71 671 623 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 671 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 3JX . . . C 3 -23.097 28.233 -23.252 1 50.93 ? C01 3JX 501 A 1 HETATM 2 C C02 3JX . . . C 3 -22.342 29.222 -22.626 1 52.82 ? C02 3JX 501 A 1 HETATM 3 C C03 3JX . . . C 3 -21.981 30.345 -23.351 1 51.96 ? C03 3JX 501 A 1 HETATM 4 C C04 3JX . . . C 3 -22.413 30.461 -24.619 1 57.4 ? C04 3JX 501 A 1 HETATM 5 C C05 3JX . . . C 3 -23.175 29.522 -25.224 1 55.19 ? C05 3JX 501 A 1 HETATM 6 C C06 3JX . . . C 3 -23.532 28.438 -24.577 1 52.79 ? C06 3JX 501 A 1 HETATM 7 N N07 3JX . . . C 3 -22.222 31.429 -25.514 1 62.02 ? N07 3JX 501 A 1 HETATM 8 C C08 3JX . . . C 3 -22.849 31.089 -26.656 1 56.8 ? C08 3JX 501 A 1 HETATM 9 C C09 3JX . . . C 3 -23.429 29.921 -26.471 1 59.23 ? C09 3JX 501 A 1 HETATM 10 C C10 3JX . . . C 3 -24.214 29.18 -27.557 1 55.58 ? C10 3JX 501 A 1 HETATM 11 C C11 3JX . . . C 3 -22.88 31.88 -27.988 1 60.97 ? C11 3JX 501 A 1 HETATM 12 C C12 3JX . . . C 3 -21.444 32.666 -25.157 1 66.47 ? C12 3JX 501 A 1 HETATM 13 C C13 3JX . . . C 3 -20.087 32.657 -25.436 1 69.48 ? C13 3JX 501 A 1 HETATM 14 C C14 3JX . . . C 3 -23.509 27.121 -22.511 1 51.6 ? C14 3JX 501 A 1 HETATM 15 O O15 3JX . . . C 3 -23.574 27.22 -21.279 1 48.19 ? O15 3JX 501 A 1 HETATM 16 N N16 3JX . . . C 3 -23.997 26.063 -23.201 1 48 ? N16 3JX 501 A 1 HETATM 17 C C17 3JX . . . C 3 -24.632 24.908 -22.541 1 51.67 ? C17 3JX 501 A 1 HETATM 18 C C18 3JX . . . C 3 -23.672 24.123 -21.868 1 54.05 ? C18 3JX 501 A 1 HETATM 19 C C19 3JX . . . C 3 -25.457 24.127 -23.601 1 50.7 ? C19 3JX 501 A 1 HETATM 20 C C20 3JX . . . C 3 -19.297 33.574 -24.737 1 66.66 ? C20 3JX 501 A 1 HETATM 21 C C21 3JX . . . C 3 -17.944 33.629 -25.017 1 72.5 ? C21 3JX 501 A 1 HETATM 22 C C22 3JX . . . C 3 -17.381 32.781 -25.993 1 81.09 ? C22 3JX 501 A 1 HETATM 23 C C23 3JX . . . C 3 -18.175 31.845 -26.684 1 68.31 ? C23 3JX 501 A 1 HETATM 24 C C24 3JX . . . C 3 -19.534 31.802 -26.416 1 71.95 ? C24 3JX 501 A 1 HETATM 25 C C25 3JX . . . C 3 -15.997 32.831 -26.259 1 94.25 ? C25 3JX 501 A 1 HETATM 26 C C26 3JX . . . C 3 -15.14 32.756 -25.149 1 88.11 ? C26 3JX 501 A 1 HETATM 27 C C27 3JX . . . C 3 -13.76 32.782 -25.31 1 88.07 ? C27 3JX 501 A 1 HETATM 28 C C28 3JX . . . C 3 -13.218 32.877 -26.596 1 95.58 ? C28 3JX 501 A 1 HETATM 29 C C29 3JX . . . C 3 -14.041 32.952 -27.729 1 87.98 ? C29 3JX 501 A 1 HETATM 30 C C30 3JX . . . C 3 -15.433 32.928 -27.577 1 87.92 ? C30 3JX 501 A 1 HETATM 31 C C31 3JX . . . C 3 -23.629 24.167 -20.471 1 56.22 ? C31 3JX 501 A 1 HETATM 32 C C32 3JX . . . C 3 -22.698 23.415 -19.772 1 54.4 ? C32 3JX 501 A 1 HETATM 33 C C33 3JX . . . C 3 -21.785 22.622 -20.474 1 57.04 ? C33 3JX 501 A 1 HETATM 34 C C34 3JX . . . C 3 -21.812 22.589 -21.869 1 58.89 ? C34 3JX 501 A 1 HETATM 35 C C35 3JX . . . C 3 -22.75 23.341 -22.568 1 55.63 ? C35 3JX 501 A 1 HETATM 36 N N36 3JX . . . C 3 -20.868 21.916 -19.794 1 67.4 ? N36 3JX 501 A 1 HETATM 37 O O37 3JX . . . C 3 -20.97 21.722 -18.254 1 62.54 ? O37 3JX 501 A 1 HETATM 38 O O38 3JX . . . C 3 -19.844 21.447 -20.411 1 69.08 ? O38 3JX 501 A 1 HETATM 39 C C39 3JX . . . C 3 -16.207 33.035 -28.73 1 75.8 ? C39 3JX 501 A 1 HETATM 40 O O40 3JX . . . C 3 -17.007 34 -28.819 1 71.45 ? O40 3JX 501 A 1 HETATM 41 O O41 3JX . . . C 3 -16.115 32.194 -29.658 1 73.93 ? O41 3JX 501 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #