data_5DWS # _model_server_result.job_id cED-vS_vtLGrVqIgc2h9EQ _model_server_result.datetime_utc '2024-11-08 13:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":502}' # _entry.id 5DWS # _exptl.entry_id 5DWS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight ? _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 26 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.2 _cell.angle_gamma 90 _cell.entry_id 5DWS _cell.length_a 59.733 _cell.length_b 30.142 _cell.length_c 60.755 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 8 B CYS 333 1_555 D SG CYS 8 D CYS 333 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.082 ? disulf ? disulf2 F SG CYS 8 F CYS 333 1_555 H SG CYS 8 H CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B C ILE 13 B ILE 338 1_555 B N NH2 14 B NH2 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 D C ILE 13 D ILE 338 1_555 D N NH2 14 D NH2 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 F C ILE 13 F ILE 338 1_555 F N NH2 14 F NH2 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale4 H C ILE 13 H ILE 338 1_555 H N NH2 14 H NH2 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DWS _atom_sites.fract_transf_matrix[1][1] 0.016741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005831 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 UNX A 1 501 9 UNX UNX . J 3 UNX A 1 502 53 UNX UNX . K 3 UNX A 1 503 56 UNX UNX . L 3 UNX A 1 504 64 UNX UNX . M 3 UNX C 1 501 66 UNX UNX . N 3 UNX C 1 502 67 UNX UNX . O 3 UNX C 1 503 49 UNX UNX . P 3 UNX C 1 504 58 UNX UNX . Q 3 UNX E 1 501 57 UNX UNX . R 3 UNX E 1 502 59 UNX UNX . S 3 UNX E 1 503 67 UNX UNX . T 3 UNX F 1 401 30 UNX UNX . U 3 UNX G 1 501 31 UNX UNX . V 3 UNX G 1 502 34 UNX UNX . W 3 UNX G 1 503 37 UNX UNX . X 3 UNX G 1 504 38 UNX UNX . Y 3 UNX G 1 505 39 UNX UNX . Z 3 UNX G 1 506 42 UNX UNX . AA 3 UNX G 1 507 46 UNX UNX . BA 3 UNX G 1 508 61 UNX UNX . CA 3 UNX G 1 509 62 UNX UNX . DA 3 UNX G 1 510 63 UNX UNX . EA 3 UNX G 1 511 65 UNX UNX . FA 3 UNX G 1 512 66 UNX UNX . GA 3 UNX G 1 513 84 UNX UNX . HA 3 UNX H 1 401 60 UNX UNX . IA 4 HOH A 1 601 100 HOH HOH . IA 4 HOH A 2 602 47 HOH HOH . IA 4 HOH A 3 603 5 HOH HOH . IA 4 HOH A 4 604 2 HOH HOH . IA 4 HOH A 5 605 63 HOH HOH . IA 4 HOH A 6 606 6 HOH HOH . IA 4 HOH A 7 607 86 HOH HOH . IA 4 HOH A 8 608 70 HOH HOH . IA 4 HOH A 9 609 3 HOH HOH . IA 4 HOH A 10 610 12 HOH HOH . IA 4 HOH A 11 611 54 HOH HOH . JA 4 HOH B 1 401 14 HOH HOH . JA 4 HOH B 2 402 11 HOH HOH . JA 4 HOH B 3 403 13 HOH HOH . KA 4 HOH C 1 601 68 HOH HOH . KA 4 HOH C 2 602 20 HOH HOH . KA 4 HOH C 3 603 1 HOH HOH . KA 4 HOH C 4 604 24 HOH HOH . KA 4 HOH C 5 605 48 HOH HOH . KA 4 HOH C 6 606 51 HOH HOH . KA 4 HOH C 7 607 50 HOH HOH . KA 4 HOH C 8 608 74 HOH HOH . KA 4 HOH C 9 609 21 HOH HOH . KA 4 HOH C 10 610 16 HOH HOH . KA 4 HOH C 11 611 15 HOH HOH . KA 4 HOH C 12 612 22 HOH HOH . KA 4 HOH C 13 613 87 HOH HOH . KA 4 HOH C 14 614 52 HOH HOH . KA 4 HOH C 15 615 64 HOH HOH . KA 4 HOH C 16 616 17 HOH HOH . KA 4 HOH C 17 617 98 HOH HOH . LA 4 HOH D 1 401 62 HOH HOH . LA 4 HOH D 2 402 10 HOH HOH . LA 4 HOH D 3 403 60 HOH HOH . MA 4 HOH E 1 601 92 HOH HOH . MA 4 HOH E 2 602 7 HOH HOH . MA 4 HOH E 3 603 28 HOH HOH . MA 4 HOH E 4 604 71 HOH HOH . MA 4 HOH E 5 605 69 HOH HOH . MA 4 HOH E 6 606 8 HOH HOH . MA 4 HOH E 7 607 76 HOH HOH . MA 4 HOH E 8 608 27 HOH HOH . MA 4 HOH E 9 609 93 HOH HOH . MA 4 HOH E 10 610 75 HOH HOH . MA 4 HOH E 11 611 94 HOH HOH . MA 4 HOH E 12 612 55 HOH HOH . NA 4 HOH F 1 501 40 HOH HOH . NA 4 HOH F 2 502 96 HOH HOH . NA 4 HOH F 3 503 85 HOH HOH . NA 4 HOH F 4 504 99 HOH HOH . OA 4 HOH G 1 601 82 HOH HOH . OA 4 HOH G 2 602 44 HOH HOH . OA 4 HOH G 3 603 77 HOH HOH . OA 4 HOH G 4 604 79 HOH HOH . OA 4 HOH G 5 605 18 HOH HOH . OA 4 HOH G 6 606 33 HOH HOH . OA 4 HOH G 7 607 25 HOH HOH . OA 4 HOH G 8 608 72 HOH HOH . OA 4 HOH G 9 609 19 HOH HOH . OA 4 HOH G 10 610 80 HOH HOH . OA 4 HOH G 11 611 23 HOH HOH . OA 4 HOH G 12 612 59 HOH HOH . OA 4 HOH G 13 613 32 HOH HOH . OA 4 HOH G 14 614 26 HOH HOH . OA 4 HOH G 15 615 43 HOH HOH . OA 4 HOH G 16 616 81 HOH HOH . OA 4 HOH G 17 617 90 HOH HOH . OA 4 HOH G 18 618 73 HOH HOH . OA 4 HOH G 19 619 97 HOH HOH . OA 4 HOH G 20 620 78 HOH HOH . OA 4 HOH G 21 621 89 HOH HOH . OA 4 HOH G 22 622 91 HOH HOH . OA 4 HOH G 23 623 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 3 _atom_site.Cartn_x 35.822 _atom_site.Cartn_y 10.208 _atom_site.Cartn_z 24.908 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 502 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 1 #