data_5DWY
#
_model_server_result.job_id            BWGAhqUjLZjYE8Y7fZigIA 
_model_server_result.datetime_utc      '2024-11-15 16:34:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dwy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":515}' 
#
_entry.id    5DWY 
#
_exptl.entry_id    5DWY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DWY 
_cell.length_a            116.01 
_cell.length_b            116.01 
_cell.length_c            308.5 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DWY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 R N N 
? 4 BA N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5DWY 
_atom_sites.fract_transf_matrix[1][1]    0.00862 
_atom_sites.fract_transf_matrix[1][2]    0.004977 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PGE A 1 501 17 PGE PGE . 
E 2 PGE A 1 502 18 PGE PGE . 
F 2 PGE A 1 503 22 PGE PGE . 
G 2 PGE A 1 504 23 PGE PGE . 
H 2 PGE A 1 505 24 PGE PGE . 
I 2 PGE A 1 506 25 PGE PGE . 
J 3 PEG A 1 507 6 PEG PEG . 
K 3 PEG A 1 508 9 PEG PEG . 
L 3 PEG A 1 509 14 PEG PEG . 
M 3 PEG A 1 510 34 PEG PEG . 
N 3 PEG A 1 511 36 PEG PEG . 
O 3 PEG A 1 512 37 PEG PEG . 
P 3 PEG A 1 513 45 PEG PEG . 
Q 3 PEG A 1 514 46 PEG PEG . 
R 4 BOG A 1 515 4 BOG BOG . 
S 2 PGE B 1 501 8 PGE PGE . 
T 2 PGE B 1 502 19 PGE PGE . 
U 3 PEG B 1 503 13 PEG PEG . 
V 3 PEG B 1 504 24 PEG PEG . 
W 3 PEG B 1 505 38 PEG PEG . 
X 3 PEG B 1 506 40 PEG PEG . 
Y 3 PEG B 1 507 43 PEG PEG . 
Z 3 PEG B 1 508 49 PEG PEG . 
AA 3 PEG B 1 509 50 PEG PEG . 
BA 4 BOG B 1 510 3 BOG BOG . 
CA 2 PGE C 1 501 20 PGE PGE . 
DA 2 PGE C 1 502 21 PGE PGE . 
EA 2 PGE C 1 503 26 PGE PGE . 
FA 3 PEG C 1 504 1 PEG PEG . 
GA 3 PEG C 1 505 16 PEG PEG . 
HA 3 PEG C 1 506 20 PEG PEG . 
IA 3 PEG C 1 507 32 PEG PEG . 
JA 3 PEG C 1 508 39 PEG PEG . 
KA 3 PEG C 1 509 42 PEG PEG . 
LA 3 PEG C 1 510 47 PEG PEG . 
MA 3 PEG C 1 511 48 PEG PEG . 
NA 5 HOH A 1 601 51 HOH HOH . 
NA 5 HOH A 2 602 189 HOH HOH . 
NA 5 HOH A 3 603 12 HOH HOH . 
NA 5 HOH A 4 604 147 HOH HOH . 
NA 5 HOH A 5 605 13 HOH HOH . 
NA 5 HOH A 6 606 128 HOH HOH . 
NA 5 HOH A 7 607 1 HOH HOH . 
NA 5 HOH A 8 608 196 HOH HOH . 
NA 5 HOH A 9 609 178 HOH HOH . 
NA 5 HOH A 10 610 123 HOH HOH . 
NA 5 HOH A 11 611 8 HOH HOH . 
NA 5 HOH A 12 612 170 HOH HOH . 
NA 5 HOH A 13 613 191 HOH HOH . 
NA 5 HOH A 14 614 40 HOH HOH . 
NA 5 HOH A 15 615 148 HOH HOH . 
NA 5 HOH A 16 616 153 HOH HOH . 
NA 5 HOH A 17 617 152 HOH HOH . 
NA 5 HOH A 18 618 124 HOH HOH . 
NA 5 HOH A 19 619 171 HOH HOH . 
NA 5 HOH A 20 620 195 HOH HOH . 
NA 5 HOH A 21 621 50 HOH HOH . 
OA 5 HOH B 1 601 77 HOH HOH . 
OA 5 HOH B 2 602 130 HOH HOH . 
OA 5 HOH B 3 603 163 HOH HOH . 
OA 5 HOH B 4 604 76 HOH HOH . 
OA 5 HOH B 5 605 32 HOH HOH . 
OA 5 HOH B 6 606 30 HOH HOH . 
OA 5 HOH B 7 607 157 HOH HOH . 
OA 5 HOH B 8 608 26 HOH HOH . 
OA 5 HOH B 9 609 180 HOH HOH . 
OA 5 HOH B 10 610 75 HOH HOH . 
OA 5 HOH B 11 611 27 HOH HOH . 
OA 5 HOH B 12 612 70 HOH HOH . 
OA 5 HOH B 13 613 193 HOH HOH . 
OA 5 HOH B 14 614 28 HOH HOH . 
OA 5 HOH B 15 615 31 HOH HOH . 
OA 5 HOH B 16 616 129 HOH HOH . 
PA 5 HOH C 1 601 199 HOH HOH . 
PA 5 HOH C 2 602 44 HOH HOH . 
PA 5 HOH C 3 603 101 HOH HOH . 
PA 5 HOH C 4 604 100 HOH HOH . 
PA 5 HOH C 5 605 98 HOH HOH . 
PA 5 HOH C 6 606 183 HOH HOH . 
PA 5 HOH C 7 607 5 HOH HOH . 
PA 5 HOH C 8 608 121 HOH HOH . 
PA 5 HOH C 9 609 166 HOH HOH . 
PA 5 HOH C 10 610 99 HOH HOH . 
PA 5 HOH C 11 611 184 HOH HOH . 
PA 5 HOH C 12 612 197 HOH HOH . 
PA 5 HOH C 13 613 167 HOH HOH . 
PA 5 HOH C 14 614 47 HOH HOH . 
PA 5 HOH C 15 615 41 HOH HOH . 
PA 5 HOH C 16 616 72 HOH HOH . 
PA 5 HOH C 17 617 68 HOH HOH . 
PA 5 HOH C 18 618 69 HOH HOH . 
PA 5 HOH C 19 619 93 HOH HOH . 
PA 5 HOH C 20 620 16 HOH HOH . 
PA 5 HOH C 21 621 192 HOH HOH . 
PA 5 HOH C 22 622 116 HOH HOH . 
PA 5 HOH C 23 623 198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . R 4 -59.813 -27.283 1.548 1 134.03 ? C1 BOG 515 A 1 
HETATM 2 O O1 BOG . . . R 4 -59.497 -28.437 2.216 1 121.78 ? O1 BOG 515 A 1 
HETATM 3 C C2 BOG . . . R 4 -59.39 -27.36 0.083 1 138.35 ? C2 BOG 515 A 1 
HETATM 4 O O2 BOG . . . R 4 -57.993 -27.669 -0.067 1 139.63 ? O2 BOG 515 A 1 
HETATM 5 C C3 BOG . . . R 4 -59.646 -26.056 -0.573 1 139.96 ? C3 BOG 515 A 1 
HETATM 6 O O3 BOG . . . R 4 -59.175 -26.146 -1.947 1 146.67 ? O3 BOG 515 A 1 
HETATM 7 C C4 BOG . . . R 4 -61.102 -25.709 -0.579 1 136.4 ? C4 BOG 515 A 1 
HETATM 8 O O4 BOG . . . R 4 -61.27 -24.371 -1.075 1 127.01 ? O4 BOG 515 A 1 
HETATM 9 C C5 BOG . . . R 4 -61.767 -25.843 0.808 1 138.71 ? C5 BOG 515 A 1 
HETATM 10 O O5 BOG . . . R 4 -61.297 -27.006 1.621 1 140.47 ? O5 BOG 515 A 1 
HETATM 11 C C6 BOG . . . R 4 -63.252 -25.932 0.598 1 131.97 ? C6 BOG 515 A 1 
HETATM 12 O O6 BOG . . . R 4 -63.854 -24.67 0.678 1 124.67 ? O6 BOG 515 A 1 
HETATM 13 C C1' BOG . . . R 4 -58.19 -28.513 2.771 1 109.63 ? C1' BOG 515 A 1 
HETATM 14 C C2' BOG . . . R 4 -58.08 -27.788 4.131 1 100.23 ? C2' BOG 515 A 1 
HETATM 15 C C3' BOG . . . R 4 -56.685 -28.038 4.756 1 91.02 ? C3' BOG 515 A 1 
HETATM 16 C C4' BOG . . . R 4 -56.766 -27.916 6.29 1 85.55 ? C4' BOG 515 A 1 
HETATM 17 C C5' BOG . . . R 4 -55.441 -27.416 6.895 1 82.41 ? C5' BOG 515 A 1 
HETATM 18 C C6' BOG . . . R 4 -54.599 -28.594 7.393 1 78.97 ? C6' BOG 515 A 1 
HETATM 19 C C7' BOG . . . R 4 -55.261 -29.293 8.568 1 73.98 ? C7' BOG 515 A 1 
HETATM 20 C C8' BOG . . . R 4 -54.366 -30.434 9.056 1 69.16 ? C8' BOG 515 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#