data_5DXH
#
_model_server_result.job_id            7vBXMYBpJZQSjVGPlXgAwA 
_model_server_result.datetime_utc      '2024-12-26 13:05:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1101}' 
#
_entry.id    5DXH 
#
_exptl.entry_id    5DXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              452.913 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl {2-[4-(2-chlorophenyl)-4H-1,2,4-triazol-3-yl]-4,5-dihydrothieno[3,2-d][1]benzoxepin-8-yl}carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.33 
_cell.angle_gamma         90 
_cell.entry_id            5DXH 
_cell.length_a            92.66 
_cell.length_b            121.83 
_cell.length_c            166.36 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E 1 1 
C,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C22 H17 Cl N4 O3 S' 
_chem_comp.formula_weight    452.913 
_chem_comp.id                5H2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl {2-[4-(2-chlorophenyl)-4H-1,2,4-triazol-3-yl]-4,5-dihydrothieno[3,2-d][1]benzoxepin-8-yl}carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 O11 5H2 sing 1 n n 
C12 C13 5H2 sing 2 n n 
C1 O2 5H2 sing 3 n n 
O2 C3 5H2 sing 4 n n 
O4 C3 5H2 doub 5 n n 
C3 N5 5H2 sing 6 n n 
O11 C10 5H2 sing 7 n n 
C13 C14 5H2 sing 8 n n 
C31 C10 5H2 doub 9 n y 
C31 C6 5H2 sing 10 n y 
N5 C6 5H2 sing 11 n n 
C10 C9 5H2 sing 12 n y 
C6 C7 5H2 doub 13 n y 
C14 C18 5H2 sing 14 n y 
C14 C15 5H2 doub 15 n y 
C9 C15 5H2 sing 16 n n 
C9 C8 5H2 doub 17 n y 
C18 C17 5H2 doub 18 n y 
C7 C8 5H2 sing 19 n y 
C15 S16 5H2 sing 20 n y 
C17 S16 5H2 sing 21 n y 
C17 C19 5H2 sing 22 n n 
N20 C19 5H2 doub 23 n y 
N20 N21 5H2 sing 24 n y 
C25 C26 5H2 doub 25 n y 
C25 C24 5H2 sing 26 n y 
C19 N23 5H2 sing 27 n y 
N21 C22 5H2 doub 28 n y 
C26 C27 5H2 sing 29 n y 
N23 C22 5H2 sing 30 n y 
N23 C24 5H2 sing 31 n n 
C24 C29 5H2 doub 32 n y 
C27 C28 5H2 doub 33 n y 
C29 C28 5H2 sing 34 n y 
C29 CL 5H2 sing 35 n n 
C7 H1 5H2 sing 36 n n 
N5 H2 5H2 sing 37 n n 
C1 H3 5H2 sing 38 n n 
C1 H4 5H2 sing 39 n n 
C1 H5 5H2 sing 40 n n 
C8 H6 5H2 sing 41 n n 
C12 H7 5H2 sing 42 n n 
C12 H8 5H2 sing 43 n n 
C13 H9 5H2 sing 44 n n 
C13 H10 5H2 sing 45 n n 
C18 H11 5H2 sing 46 n n 
C22 H12 5H2 sing 47 n n 
C25 H13 5H2 sing 48 n n 
C26 H14 5H2 sing 49 n n 
C27 H15 5H2 sing 50 n n 
C28 H16 5H2 sing 51 n n 
C31 H17 5H2 sing 52 n n 
#
_atom_sites.entry_id                     5DXH 
_atom_sites.fract_transf_matrix[1][1]    0.010792 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002359 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006153 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 5H2 A 1 1101 1 5H2 ZZZ . 
F 3 5H2 D 1 1101 1 5H2 ZZZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 5H2 . . . F 3 17.226 19.885 -81.573 1 82.26 ? C7 5H2 1101 D 1 
HETATM 2 C C9 5H2 . . . F 3 18.449 19.64 -79.502 1 76.93 ? C9 5H2 1101 D 1 
HETATM 3 C C10 5H2 . . . F 3 18.078 18.261 -79.437 1 78.74 ? C10 5H2 1101 D 1 
HETATM 4 O O4 5H2 . . . F 3 14.49 19.594 -82.817 1 99.27 ? O4 5H2 1101 D 1 
HETATM 5 N N5 5H2 . . . F 3 16.074 18.005 -82.579 1 93.08 ? N5 5H2 1101 D 1 
HETATM 6 C C6 5H2 . . . F 3 16.814 18.559 -81.512 1 86.53 ? C6 5H2 1101 D 1 
HETATM 7 C C1 5H2 . . . F 3 14.924 18.189 -85.542 1 94.23 ? C1 5H2 1101 D 1 
HETATM 8 O O2 5H2 . . . F 3 14.395 17.879 -84.218 1 95.25 ? O2 5H2 1101 D 1 
HETATM 9 C C3 5H2 . . . F 3 14.971 18.535 -83.182 1 96.56 ? C3 5H2 1101 D 1 
HETATM 10 C C8 5H2 . . . F 3 18.001 20.417 -80.56 1 78.67 ? C8 5H2 1101 D 1 
HETATM 11 O O11 5H2 . . . F 3 18.502 17.466 -78.411 1 73.61 ? O11 5H2 1101 D 1 
HETATM 12 C C12 5H2 . . . F 3 18.234 17.814 -77.057 1 70.32 ? C12 5H2 1101 D 1 
HETATM 13 C C13 5H2 . . . F 3 19.437 18.577 -76.554 1 71.06 ? C13 5H2 1101 D 1 
HETATM 14 C C14 5H2 . . . F 3 19.599 19.95 -77.184 1 75.42 ? C14 5H2 1101 D 1 
HETATM 15 C C15 5H2 . . . F 3 19.24 20.349 -78.471 1 76.69 ? C15 5H2 1101 D 1 
HETATM 16 S S16 5H2 . . . F 3 19.681 22.017 -78.701 1 80.23 ? S16 5H2 1101 D 1 
HETATM 17 C C17 5H2 . . . F 3 20.395 22.137 -77.113 1 80.97 ? C17 5H2 1101 D 1 
HETATM 18 C C18 5H2 . . . F 3 20.257 20.945 -76.486 1 78.83 ? C18 5H2 1101 D 1 
HETATM 19 C C19 5H2 . . . F 3 21.087 23.305 -76.576 1 84.36 ? C19 5H2 1101 D 1 
HETATM 20 N N20 5H2 . . . F 3 21.627 23.395 -75.373 1 87.45 ? N20 5H2 1101 D 1 
HETATM 21 N N21 5H2 . . . F 3 22.184 24.547 -75.219 1 87.09 ? N21 5H2 1101 D 1 
HETATM 22 C C22 5H2 . . . F 3 22.037 25.241 -76.309 1 85.99 ? C22 5H2 1101 D 1 
HETATM 23 N N23 5H2 . . . F 3 21.355 24.482 -77.229 1 85.92 ? N23 5H2 1101 D 1 
HETATM 24 C C24 5H2 . . . F 3 20.968 24.9 -78.527 1 88.34 ? C24 5H2 1101 D 1 
HETATM 25 C C25 5H2 . . . F 3 19.72 25.491 -78.718 1 88.21 ? C25 5H2 1101 D 1 
HETATM 26 C C26 5H2 . . . F 3 19.336 25.96 -79.968 1 86.34 ? C26 5H2 1101 D 1 
HETATM 27 C C27 5H2 . . . F 3 20.184 25.83 -81.054 1 86.16 ? C27 5H2 1101 D 1 
HETATM 28 C C28 5H2 . . . F 3 21.423 25.244 -80.887 1 87.77 ? C28 5H2 1101 D 1 
HETATM 29 C C29 5H2 . . . F 3 21.815 24.8 -79.635 1 90.75 ? C29 5H2 1101 D 1 
HETATM 30 CL CL 5H2 . . . F 3 23.391 24.118 -79.483 1 97.51 ? CL 5H2 1101 D 1 
HETATM 31 C C31 5H2 . . . F 3 17.282 17.74 -80.462 1 83.62 ? C31 5H2 1101 D 1 
#
_model_server_stats.io_time_ms              170 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#