data_5DXK # _model_server_result.job_id efrIqn-nT59K9iOMxcBlYQ _model_server_result.datetime_utc '2024-10-12 16:37:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5DXK # _exptl.entry_id 5DXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-[(9s)-bicyclo[3.3.1]non-9-ylmethanediyl]diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.05 _cell.angle_gamma 90 _cell.entry_id 5DXK _cell.length_a 54.637 _cell.length_b 82.538 _cell.length_c 58.636 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C22 H26 O2' _chem_comp.formula_weight 322.441 _chem_comp.id 5J1 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-[(9s)-bicyclo[3.3.1]non-9-ylmethanediyl]diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O02 C15 5J1 sing 1 n n C14 C15 5J1 doub 2 n y C14 C13 5J1 sing 3 n y C15 C16 5J1 sing 4 n y C13 C12 5J1 doub 5 n y C16 C17 5J1 doub 6 n y C12 C17 5J1 sing 7 n y C12 C10 5J1 sing 8 n n C22 C21 5J1 doub 9 n y C22 C11 5J1 sing 10 n y C21 C20 5J1 sing 11 n y C10 C11 5J1 sing 12 n n C10 C09 5J1 sing 13 n n C11 C18 5J1 doub 14 n y C20 O01 5J1 sing 15 n n C20 C19 5J1 doub 16 n y C18 C19 5J1 sing 17 n y C09 C04 5J1 sing 18 n n C09 C08 5J1 sing 19 n n C04 C05 5J1 sing 20 n n C04 C03 5J1 sing 21 n n C05 C06 5J1 sing 22 n n C08 C07 5J1 sing 23 n n C08 C01 5J1 sing 24 n n C06 C07 5J1 sing 25 n n C03 C02 5J1 sing 26 n n C01 C02 5J1 sing 27 n n C01 H1 5J1 sing 28 n n C01 H2 5J1 sing 29 n n C02 H3 5J1 sing 30 n n C02 H4 5J1 sing 31 n n C03 H5 5J1 sing 32 n n C03 H6 5J1 sing 33 n n C04 H7 5J1 sing 34 n n C05 H8 5J1 sing 35 n n C05 H9 5J1 sing 36 n n C06 H10 5J1 sing 37 n n C06 H11 5J1 sing 38 n n C07 H12 5J1 sing 39 n n C07 H13 5J1 sing 40 n n C08 H14 5J1 sing 41 n n C09 H15 5J1 sing 42 n n C10 H16 5J1 sing 43 n n C13 H17 5J1 sing 44 n n C14 H18 5J1 sing 45 n n C16 H19 5J1 sing 46 n n C17 H20 5J1 sing 47 n n C18 H21 5J1 sing 48 n n C19 H22 5J1 sing 49 n n C21 H23 5J1 sing 50 n n C22 H24 5J1 sing 51 n n O01 H25 5J1 sing 52 n n O02 H26 5J1 sing 53 n n # _atom_sites.entry_id 5DXK _atom_sites.fract_transf_matrix[1][1] 0.018303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007044 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5J1 A 1 900 900 5J1 UNK . F 3 5J1 B 1 901 901 5J1 UNK . G 4 HOH A 1 1001 95 HOH HOH . G 4 HOH A 2 1002 21 HOH HOH . G 4 HOH A 3 1003 29 HOH HOH . G 4 HOH A 4 1004 107 HOH HOH . G 4 HOH A 5 1005 38 HOH HOH . G 4 HOH A 6 1006 69 HOH HOH . G 4 HOH A 7 1007 78 HOH HOH . G 4 HOH A 8 1008 14 HOH HOH . G 4 HOH A 9 1009 12 HOH HOH . G 4 HOH A 10 1010 36 HOH HOH . G 4 HOH A 11 1011 19 HOH HOH . G 4 HOH A 12 1012 89 HOH HOH . G 4 HOH A 13 1013 11 HOH HOH . G 4 HOH A 14 1014 26 HOH HOH . G 4 HOH A 15 1015 7 HOH HOH . G 4 HOH A 16 1016 20 HOH HOH . G 4 HOH A 17 1017 55 HOH HOH . G 4 HOH A 18 1018 100 HOH HOH . G 4 HOH A 19 1019 23 HOH HOH . G 4 HOH A 20 1020 40 HOH HOH . G 4 HOH A 21 1021 81 HOH HOH . G 4 HOH A 22 1022 79 HOH HOH . G 4 HOH A 23 1023 109 HOH HOH . G 4 HOH A 24 1024 6 HOH HOH . G 4 HOH A 25 1025 16 HOH HOH . G 4 HOH A 26 1026 49 HOH HOH . G 4 HOH A 27 1027 99 HOH HOH . G 4 HOH A 28 1028 2 HOH HOH . G 4 HOH A 29 1029 106 HOH HOH . G 4 HOH A 30 1030 67 HOH HOH . G 4 HOH A 31 1031 96 HOH HOH . G 4 HOH A 32 1032 22 HOH HOH . G 4 HOH A 33 1033 27 HOH HOH . G 4 HOH A 34 1034 116 HOH HOH . G 4 HOH A 35 1035 50 HOH HOH . G 4 HOH A 36 1036 39 HOH HOH . G 4 HOH A 37 1037 4 HOH HOH . G 4 HOH A 38 1038 75 HOH HOH . G 4 HOH A 39 1039 9 HOH HOH . G 4 HOH A 40 1040 58 HOH HOH . G 4 HOH A 41 1041 18 HOH HOH . G 4 HOH A 42 1042 37 HOH HOH . G 4 HOH A 43 1043 17 HOH HOH . G 4 HOH A 44 1044 24 HOH HOH . G 4 HOH A 45 1045 47 HOH HOH . G 4 HOH A 46 1046 93 HOH HOH . G 4 HOH A 47 1047 87 HOH HOH . G 4 HOH A 48 1048 68 HOH HOH . G 4 HOH A 49 1049 48 HOH HOH . G 4 HOH A 50 1050 98 HOH HOH . G 4 HOH A 51 1051 76 HOH HOH . G 4 HOH A 52 1052 66 HOH HOH . G 4 HOH A 53 1053 118 HOH HOH . G 4 HOH A 54 1054 110 HOH HOH . G 4 HOH A 55 1055 119 HOH HOH . G 4 HOH A 56 1056 122 HOH HOH . G 4 HOH A 57 1057 59 HOH HOH . G 4 HOH A 58 1058 127 HOH HOH . G 4 HOH A 59 1059 97 HOH HOH . G 4 HOH A 60 1060 3 HOH HOH . G 4 HOH A 61 1061 8 HOH HOH . G 4 HOH A 62 1062 53 HOH HOH . G 4 HOH A 63 1063 123 HOH HOH . G 4 HOH A 64 1064 129 HOH HOH . H 4 HOH B 1 1001 113 HOH HOH . H 4 HOH B 2 1002 83 HOH HOH . H 4 HOH B 3 1003 125 HOH HOH . H 4 HOH B 4 1004 74 HOH HOH . H 4 HOH B 5 1005 82 HOH HOH . H 4 HOH B 6 1006 88 HOH HOH . H 4 HOH B 7 1007 73 HOH HOH . H 4 HOH B 8 1008 124 HOH HOH . H 4 HOH B 9 1009 104 HOH HOH . H 4 HOH B 10 1010 41 HOH HOH . H 4 HOH B 11 1011 115 HOH HOH . H 4 HOH B 12 1012 61 HOH HOH . H 4 HOH B 13 1013 60 HOH HOH . H 4 HOH B 14 1014 64 HOH HOH . H 4 HOH B 15 1015 15 HOH HOH . H 4 HOH B 16 1016 80 HOH HOH . H 4 HOH B 17 1017 43 HOH HOH . H 4 HOH B 18 1018 72 HOH HOH . H 4 HOH B 19 1019 62 HOH HOH . H 4 HOH B 20 1020 28 HOH HOH . H 4 HOH B 21 1021 35 HOH HOH . H 4 HOH B 22 1022 44 HOH HOH . H 4 HOH B 23 1023 128 HOH HOH . H 4 HOH B 24 1024 70 HOH HOH . H 4 HOH B 25 1025 33 HOH HOH . H 4 HOH B 26 1026 34 HOH HOH . H 4 HOH B 27 1027 25 HOH HOH . H 4 HOH B 28 1028 10 HOH HOH . H 4 HOH B 29 1029 103 HOH HOH . H 4 HOH B 30 1030 111 HOH HOH . H 4 HOH B 31 1031 5 HOH HOH . H 4 HOH B 32 1032 31 HOH HOH . H 4 HOH B 33 1033 65 HOH HOH . H 4 HOH B 34 1034 71 HOH HOH . H 4 HOH B 35 1035 85 HOH HOH . H 4 HOH B 36 1036 13 HOH HOH . H 4 HOH B 37 1037 1 HOH HOH . H 4 HOH B 38 1038 102 HOH HOH . H 4 HOH B 39 1039 45 HOH HOH . H 4 HOH B 40 1040 52 HOH HOH . H 4 HOH B 41 1041 32 HOH HOH . H 4 HOH B 42 1042 63 HOH HOH . H 4 HOH B 43 1043 92 HOH HOH . H 4 HOH B 44 1044 86 HOH HOH . H 4 HOH B 45 1045 117 HOH HOH . H 4 HOH B 46 1046 90 HOH HOH . H 4 HOH B 47 1047 112 HOH HOH . H 4 HOH B 48 1048 77 HOH HOH . H 4 HOH B 49 1049 51 HOH HOH . H 4 HOH B 50 1050 105 HOH HOH . H 4 HOH B 51 1051 57 HOH HOH . H 4 HOH B 52 1052 56 HOH HOH . H 4 HOH B 53 1053 84 HOH HOH . H 4 HOH B 54 1054 108 HOH HOH . H 4 HOH B 55 1055 46 HOH HOH . H 4 HOH B 56 1056 120 HOH HOH . H 4 HOH B 57 1057 121 HOH HOH . H 4 HOH B 58 1058 114 HOH HOH . H 4 HOH B 59 1059 30 HOH HOH . H 4 HOH B 60 1060 91 HOH HOH . H 4 HOH B 61 1061 94 HOH HOH . I 4 HOH C 1 701 54 HOH HOH . I 4 HOH C 2 702 42 HOH HOH . J 4 HOH D 1 701 126 HOH HOH . J 4 HOH D 2 702 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5J1 . . . E 3 18.941 -3.052 8.096 1 30.81 ? C01 5J1 900 A 1 HETATM 2 C C02 5J1 . . . E 3 17.444 -3.291 8.305 1 32.56 ? C02 5J1 900 A 1 HETATM 3 C C03 5J1 . . . E 3 16.665 -3.583 7.014 1 31.38 ? C03 5J1 900 A 1 HETATM 4 C C04 5J1 . . . E 3 17.449 -4.192 5.835 1 33.55 ? C04 5J1 900 A 1 HETATM 5 C C05 5J1 . . . E 3 17.605 -5.729 5.884 1 34.5 ? C05 5J1 900 A 1 HETATM 6 C C06 5J1 . . . E 3 18.509 -6.258 7.004 1 33.23 ? C06 5J1 900 A 1 HETATM 7 C C07 5J1 . . . E 3 19.749 -5.379 7.233 1 31.46 ? C07 5J1 900 A 1 HETATM 8 C C08 5J1 . . . E 3 19.587 -3.865 6.955 1 32.17 ? C08 5J1 900 A 1 HETATM 9 C C09 5J1 . . . E 3 18.825 -3.55 5.667 1 34.26 ? C09 5J1 900 A 1 HETATM 10 C C10 5J1 . . . E 3 19.208 -2.598 4.753 1 37.02 ? C10 5J1 900 A 1 HETATM 11 C C11 5J1 . . . E 3 20.492 -2.133 4.778 1 35.14 ? C11 5J1 900 A 1 HETATM 12 C C12 5J1 . . . E 3 18.48 -2.265 3.634 1 37.31 ? C12 5J1 900 A 1 HETATM 13 C C13 5J1 . . . E 3 19.011 -2.391 2.393 1 35.08 ? C13 5J1 900 A 1 HETATM 14 C C14 5J1 . . . E 3 18.341 -2.075 1.271 1 33.28 ? C14 5J1 900 A 1 HETATM 15 C C15 5J1 . . . E 3 17.086 -1.601 1.318 1 37.51 ? C15 5J1 900 A 1 HETATM 16 C C16 5J1 . . . E 3 16.535 -1.461 2.532 1 32.88 ? C16 5J1 900 A 1 HETATM 17 C C17 5J1 . . . E 3 17.218 -1.777 3.643 1 34.19 ? C17 5J1 900 A 1 HETATM 18 C C18 5J1 . . . E 3 20.773 -0.864 5.156 1 33.63 ? C18 5J1 900 A 1 HETATM 19 C C19 5J1 . . . E 3 22.029 -0.383 5.195 1 35.27 ? C19 5J1 900 A 1 HETATM 20 C C20 5J1 . . . E 3 23.084 -1.147 4.859 1 36.64 ? C20 5J1 900 A 1 HETATM 21 C C21 5J1 . . . E 3 22.827 -2.409 4.486 1 34.01 ? C21 5J1 900 A 1 HETATM 22 C C22 5J1 . . . E 3 21.571 -2.878 4.448 1 33.64 ? C22 5J1 900 A 1 HETATM 23 O O01 5J1 . . . E 3 24.359 -0.675 4.894 1 35 ? O01 5J1 900 A 1 HETATM 24 O O02 5J1 . . . E 3 16.397 -1.277 0.193 1 38.62 ? O02 5J1 900 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #