data_5DXM # _model_server_result.job_id RdaIU9j5HfL4iCm5KcOCpw _model_server_result.datetime_utc '2024-10-12 16:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5DXM # _exptl.entry_id 5DXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.06 _cell.angle_gamma 90 _cell.entry_id 5DXM _cell.length_a 54.506 _cell.length_b 82.034 _cell.length_c 58.843 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 120 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 417 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CG2 _struct_conn.ptnr2_label_comp_id VAL _struct_conn.ptnr2_label_seq_id 121 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id VAL _struct_conn.ptnr2_auth_seq_id 418 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.22 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H24 O2' _chem_comp.formula_weight 320.425 _chem_comp.id 5J0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C15 5J0 sing 1 n n C14 C15 5J0 doub 2 n y C14 C13 5J0 sing 3 n y C15 C16 5J0 sing 4 n y C13 C12 5J0 doub 5 n y C16 C17 5J0 doub 6 n y C12 C17 5J0 sing 7 n y C12 C10 5J0 sing 8 n n O02 C19 5J0 sing 9 n n C18 C19 5J0 doub 10 n y C18 C11 5J0 sing 11 n y C19 C20 5J0 sing 12 n y C10 C11 5J0 sing 13 n n C10 C09 5J0 doub 14 n n C11 C22 5J0 doub 15 n y C20 C21 5J0 doub 16 n y C22 C21 5J0 sing 17 n y C09 C04 5J0 sing 18 n n C09 C08 5J0 sing 19 n n C04 C05 5J0 sing 20 n n C04 C03 5J0 sing 21 n n C05 C06 5J0 sing 22 n n C06 C07 5J0 sing 23 n n C08 C07 5J0 sing 24 n n C08 C01 5J0 sing 25 n n C03 C02 5J0 sing 26 n n C01 C02 5J0 sing 27 n n C01 H1 5J0 sing 28 n n C01 H2 5J0 sing 29 n n C02 H3 5J0 sing 30 n n C02 H4 5J0 sing 31 n n C03 H5 5J0 sing 32 n n C03 H6 5J0 sing 33 n n C04 H7 5J0 sing 34 n n C05 H8 5J0 sing 35 n n C05 H9 5J0 sing 36 n n C06 H10 5J0 sing 37 n n C06 H11 5J0 sing 38 n n C07 H12 5J0 sing 39 n n C07 H13 5J0 sing 40 n n C08 H14 5J0 sing 41 n n C13 H15 5J0 sing 42 n n C14 H16 5J0 sing 43 n n C16 H17 5J0 sing 44 n n C17 H18 5J0 sing 45 n n C18 H19 5J0 sing 46 n n C20 H20 5J0 sing 47 n n C21 H21 5J0 sing 48 n n C22 H22 5J0 sing 49 n n O01 H23 5J0 sing 50 n n O02 H24 5J0 sing 51 n n # _atom_sites.entry_id 5DXM _atom_sites.fract_transf_matrix[1][1] 0.018347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5J0 A 1 900 900 5J0 UNK . F 3 5J0 B 1 901 901 5J0 UNK . G 4 HOH A 1 1001 29 HOH HOH . G 4 HOH A 2 1002 73 HOH HOH . G 4 HOH A 3 1003 51 HOH HOH . G 4 HOH A 4 1004 71 HOH HOH . G 4 HOH A 5 1005 17 HOH HOH . G 4 HOH A 6 1006 59 HOH HOH . G 4 HOH A 7 1007 23 HOH HOH . G 4 HOH A 8 1008 53 HOH HOH . G 4 HOH A 9 1009 57 HOH HOH . G 4 HOH A 10 1010 36 HOH HOH . G 4 HOH A 11 1011 25 HOH HOH . G 4 HOH A 12 1012 2 HOH HOH . G 4 HOH A 13 1013 63 HOH HOH . G 4 HOH A 14 1014 13 HOH HOH . G 4 HOH A 15 1015 38 HOH HOH . G 4 HOH A 16 1016 72 HOH HOH . G 4 HOH A 17 1017 16 HOH HOH . G 4 HOH A 18 1018 47 HOH HOH . G 4 HOH A 19 1019 31 HOH HOH . G 4 HOH A 20 1020 4 HOH HOH . G 4 HOH A 21 1021 45 HOH HOH . G 4 HOH A 22 1022 5 HOH HOH . G 4 HOH A 23 1023 70 HOH HOH . G 4 HOH A 24 1024 26 HOH HOH . G 4 HOH A 25 1025 21 HOH HOH . G 4 HOH A 26 1026 15 HOH HOH . G 4 HOH A 27 1027 32 HOH HOH . G 4 HOH A 28 1028 77 HOH HOH . G 4 HOH A 29 1029 22 HOH HOH . G 4 HOH A 30 1030 42 HOH HOH . G 4 HOH A 31 1031 76 HOH HOH . G 4 HOH A 32 1032 20 HOH HOH . G 4 HOH A 33 1033 58 HOH HOH . G 4 HOH A 34 1034 8 HOH HOH . G 4 HOH A 35 1035 50 HOH HOH . G 4 HOH A 36 1036 67 HOH HOH . G 4 HOH A 37 1037 28 HOH HOH . G 4 HOH A 38 1038 65 HOH HOH . G 4 HOH A 39 1039 54 HOH HOH . G 4 HOH A 40 1040 60 HOH HOH . G 4 HOH A 41 1041 18 HOH HOH . H 4 HOH B 1 1001 46 HOH HOH . H 4 HOH B 2 1002 27 HOH HOH . H 4 HOH B 3 1003 6 HOH HOH . H 4 HOH B 4 1004 66 HOH HOH . H 4 HOH B 5 1005 33 HOH HOH . H 4 HOH B 6 1006 62 HOH HOH . H 4 HOH B 7 1007 11 HOH HOH . H 4 HOH B 8 1008 19 HOH HOH . H 4 HOH B 9 1009 7 HOH HOH . H 4 HOH B 10 1010 10 HOH HOH . H 4 HOH B 11 1011 14 HOH HOH . H 4 HOH B 12 1012 9 HOH HOH . H 4 HOH B 13 1013 61 HOH HOH . H 4 HOH B 14 1014 74 HOH HOH . H 4 HOH B 15 1015 75 HOH HOH . H 4 HOH B 16 1016 64 HOH HOH . H 4 HOH B 17 1017 3 HOH HOH . H 4 HOH B 18 1018 56 HOH HOH . H 4 HOH B 19 1019 44 HOH HOH . H 4 HOH B 20 1020 40 HOH HOH . H 4 HOH B 21 1021 30 HOH HOH . H 4 HOH B 22 1022 34 HOH HOH . H 4 HOH B 23 1023 39 HOH HOH . H 4 HOH B 24 1024 12 HOH HOH . H 4 HOH B 25 1025 68 HOH HOH . H 4 HOH B 26 1026 1 HOH HOH . H 4 HOH B 27 1027 55 HOH HOH . H 4 HOH B 28 1028 49 HOH HOH . H 4 HOH B 29 1029 24 HOH HOH . H 4 HOH B 30 1030 69 HOH HOH . H 4 HOH B 31 1031 37 HOH HOH . H 4 HOH B 32 1032 41 HOH HOH . H 4 HOH B 33 1033 43 HOH HOH . H 4 HOH B 34 1034 48 HOH HOH . H 4 HOH B 35 1035 35 HOH HOH . I 4 HOH C 1 701 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5J0 . . . E 3 19.087 -2.777 8.506 1 42.38 ? C01 5J0 900 A 1 HETATM 2 C C02 5J0 . . . E 3 17.693 -3.336 8.705 1 43.26 ? C02 5J0 900 A 1 HETATM 3 C C03 5J0 . . . E 3 16.944 -3.42 7.386 1 42.39 ? C03 5J0 900 A 1 HETATM 4 C C04 5J0 . . . E 3 17.774 -3.87 6.198 1 40.78 ? C04 5J0 900 A 1 HETATM 5 C C05 5J0 . . . E 3 18.079 -5.365 6.202 1 41.64 ? C05 5J0 900 A 1 HETATM 6 C C06 5J0 . . . E 3 19.008 -5.861 7.288 1 41.44 ? C06 5J0 900 A 1 HETATM 7 C C07 5J0 . . . E 3 20.141 -4.891 7.558 1 40.98 ? C07 5J0 900 A 1 HETATM 8 C C08 5J0 . . . E 3 19.841 -3.402 7.353 1 40.86 ? C08 5J0 900 A 1 HETATM 9 C C09 5J0 . . . E 3 19.058 -3.103 6.092 1 40.63 ? C09 5J0 900 A 1 HETATM 10 C C10 5J0 . . . E 3 19.475 -2.332 5.058 1 40.82 ? C10 5J0 900 A 1 HETATM 11 C C11 5J0 . . . E 3 20.684 -1.738 5.089 1 40.35 ? C11 5J0 900 A 1 HETATM 12 C C12 5J0 . . . E 3 18.703 -1.967 4.005 1 40.72 ? C12 5J0 900 A 1 HETATM 13 C C13 5J0 . . . E 3 19.239 -1.822 2.788 1 39.33 ? C13 5J0 900 A 1 HETATM 14 C C14 5J0 . . . E 3 18.54 -1.456 1.731 1 38.64 ? C14 5J0 900 A 1 HETATM 15 C C15 5J0 . . . E 3 17.252 -1.195 1.813 1 39.07 ? C15 5J0 900 A 1 HETATM 16 C C16 5J0 . . . E 3 16.696 -1.345 3.002 1 39.17 ? C16 5J0 900 A 1 HETATM 17 C C17 5J0 . . . E 3 17.404 -1.7 4.06 1 39.27 ? C17 5J0 900 A 1 HETATM 18 C C18 5J0 . . . E 3 21.82 -2.414 4.928 1 41.21 ? C18 5J0 900 A 1 HETATM 19 C C19 5J0 . . . E 3 23.019 -1.872 4.949 1 41.43 ? C19 5J0 900 A 1 HETATM 20 C C20 5J0 . . . E 3 23.134 -0.588 5.149 1 40.63 ? C20 5J0 900 A 1 HETATM 21 C C21 5J0 . . . E 3 22.04 0.129 5.327 1 41.2 ? C21 5J0 900 A 1 HETATM 22 C C22 5J0 . . . E 3 20.852 -0.443 5.291 1 40.3 ? C22 5J0 900 A 1 HETATM 23 O O01 5J0 . . . E 3 16.533 -0.827 0.757 1 38.06 ? O01 5J0 900 A 1 HETATM 24 O O02 5J0 . . . E 3 24.113 -2.602 4.787 1 43.07 ? O02 5J0 900 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #