data_5DXP
#
_model_server_result.job_id            9xWkzh4sIwqZw9XiVmwGYA 
_model_server_result.datetime_utc      '2024-10-12 16:32:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":900}' 
#
_entry.id    5DXP 
#
_exptl.entry_id    5DXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              304.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(phenyl)methyl]phenol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.79 
_cell.angle_gamma         90 
_cell.entry_id            5DXP 
_cell.length_a            53.038 
_cell.length_b            77.203 
_cell.length_c            58.208 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C22 H24 O' 
_chem_comp.formula_weight    304.425 
_chem_comp.id                5HX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(phenyl)methyl]phenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 C01 5HX sing 1 n n 
C02 C03 5HX sing 2 n n 
C01 C08 5HX sing 3 n n 
C03 C04 5HX sing 4 n n 
C08 C07 5HX sing 5 n n 
C08 C09 5HX sing 6 n n 
C04 C09 5HX sing 7 n n 
C04 C05 5HX sing 8 n n 
C07 C06 5HX sing 9 n n 
C06 C05 5HX sing 10 n n 
C09 C10 5HX doub 11 n n 
C22 C21 5HX doub 12 n y 
C22 C12 5HX sing 13 n y 
C21 C20 5HX sing 14 n y 
C10 C12 5HX sing 15 n n 
C10 C11 5HX sing 16 n n 
C13 C11 5HX doub 17 n y 
C13 C14 5HX sing 18 n y 
C12 C18 5HX doub 19 n y 
C11 C17 5HX sing 20 n y 
C14 C15 5HX doub 21 n y 
C20 O01 5HX sing 22 n n 
C20 C19 5HX doub 23 n y 
C17 C16 5HX doub 24 n y 
C18 C19 5HX sing 25 n y 
C15 C16 5HX sing 26 n y 
C01 H1 5HX sing 27 n n 
C01 H2 5HX sing 28 n n 
C02 H3 5HX sing 29 n n 
C02 H4 5HX sing 30 n n 
C03 H5 5HX sing 31 n n 
C03 H6 5HX sing 32 n n 
C04 H7 5HX sing 33 n n 
C05 H8 5HX sing 34 n n 
C05 H9 5HX sing 35 n n 
C06 H10 5HX sing 36 n n 
C06 H11 5HX sing 37 n n 
C07 H12 5HX sing 38 n n 
C07 H13 5HX sing 39 n n 
C08 H14 5HX sing 40 n n 
C13 H17 5HX sing 41 n n 
C14 H18 5HX sing 42 n n 
C15 H19 5HX sing 43 n n 
C16 H20 5HX sing 44 n n 
C17 H21 5HX sing 45 n n 
C18 H22 5HX sing 46 n n 
C19 H23 5HX sing 47 n n 
C21 H24 5HX sing 48 n n 
C22 H25 5HX sing 49 n n 
O01 H26 5HX sing 50 n n 
#
_atom_sites.entry_id                     5DXP 
_atom_sites.fract_transf_matrix[1][1]    0.018854 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006784 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018258 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 5HX A 1 900 900 5HX UNK . 
F 3 5HX B 1 901 901 5HX UNK . 
G 4 HOH A 1 1001 113 HOH HOH . 
G 4 HOH A 2 1002 70 HOH HOH . 
G 4 HOH A 3 1003 10 HOH HOH . 
G 4 HOH A 4 1004 69 HOH HOH . 
G 4 HOH A 5 1005 55 HOH HOH . 
G 4 HOH A 6 1006 4 HOH HOH . 
G 4 HOH A 7 1007 56 HOH HOH . 
G 4 HOH A 8 1008 92 HOH HOH . 
G 4 HOH A 9 1009 14 HOH HOH . 
G 4 HOH A 10 1010 88 HOH HOH . 
G 4 HOH A 11 1011 29 HOH HOH . 
G 4 HOH A 12 1012 49 HOH HOH . 
G 4 HOH A 13 1013 74 HOH HOH . 
G 4 HOH A 14 1014 6 HOH HOH . 
G 4 HOH A 15 1015 35 HOH HOH . 
G 4 HOH A 16 1016 60 HOH HOH . 
G 4 HOH A 17 1017 15 HOH HOH . 
G 4 HOH A 18 1018 106 HOH HOH . 
G 4 HOH A 19 1019 64 HOH HOH . 
G 4 HOH A 20 1020 71 HOH HOH . 
G 4 HOH A 21 1021 115 HOH HOH . 
G 4 HOH A 22 1022 40 HOH HOH . 
G 4 HOH A 23 1023 66 HOH HOH . 
G 4 HOH A 24 1024 91 HOH HOH . 
G 4 HOH A 25 1025 52 HOH HOH . 
G 4 HOH A 26 1026 8 HOH HOH . 
G 4 HOH A 27 1027 13 HOH HOH . 
G 4 HOH A 28 1028 1 HOH HOH . 
G 4 HOH A 29 1029 72 HOH HOH . 
G 4 HOH A 30 1030 5 HOH HOH . 
G 4 HOH A 31 1031 57 HOH HOH . 
G 4 HOH A 32 1032 25 HOH HOH . 
G 4 HOH A 33 1033 86 HOH HOH . 
G 4 HOH A 34 1034 2 HOH HOH . 
G 4 HOH A 35 1035 114 HOH HOH . 
G 4 HOH A 36 1036 26 HOH HOH . 
G 4 HOH A 37 1037 89 HOH HOH . 
G 4 HOH A 38 1038 105 HOH HOH . 
G 4 HOH A 39 1039 90 HOH HOH . 
G 4 HOH A 40 1040 61 HOH HOH . 
G 4 HOH A 41 1041 101 HOH HOH . 
G 4 HOH A 42 1042 45 HOH HOH . 
G 4 HOH A 43 1043 83 HOH HOH . 
G 4 HOH A 44 1044 11 HOH HOH . 
G 4 HOH A 45 1045 67 HOH HOH . 
G 4 HOH A 46 1046 24 HOH HOH . 
G 4 HOH A 47 1047 84 HOH HOH . 
G 4 HOH A 48 1048 27 HOH HOH . 
G 4 HOH A 49 1049 23 HOH HOH . 
G 4 HOH A 50 1050 63 HOH HOH . 
G 4 HOH A 51 1051 120 HOH HOH . 
G 4 HOH A 52 1052 53 HOH HOH . 
G 4 HOH A 53 1053 111 HOH HOH . 
G 4 HOH A 54 1054 80 HOH HOH . 
G 4 HOH A 55 1055 97 HOH HOH . 
G 4 HOH A 56 1056 118 HOH HOH . 
G 4 HOH A 57 1057 112 HOH HOH . 
G 4 HOH A 58 1058 109 HOH HOH . 
G 4 HOH A 59 1059 94 HOH HOH . 
G 4 HOH A 60 1060 39 HOH HOH . 
G 4 HOH A 61 1061 123 HOH HOH . 
G 4 HOH A 62 1062 77 HOH HOH . 
G 4 HOH A 63 1063 116 HOH HOH . 
G 4 HOH A 64 1064 9 HOH HOH . 
H 4 HOH B 1 1001 100 HOH HOH . 
H 4 HOH B 2 1002 48 HOH HOH . 
H 4 HOH B 3 1003 103 HOH HOH . 
H 4 HOH B 4 1004 99 HOH HOH . 
H 4 HOH B 5 1005 19 HOH HOH . 
H 4 HOH B 6 1006 79 HOH HOH . 
H 4 HOH B 7 1007 44 HOH HOH . 
H 4 HOH B 8 1008 98 HOH HOH . 
H 4 HOH B 9 1009 96 HOH HOH . 
H 4 HOH B 10 1010 21 HOH HOH . 
H 4 HOH B 11 1011 51 HOH HOH . 
H 4 HOH B 12 1012 3 HOH HOH . 
H 4 HOH B 13 1013 108 HOH HOH . 
H 4 HOH B 14 1014 31 HOH HOH . 
H 4 HOH B 15 1015 82 HOH HOH . 
H 4 HOH B 16 1016 85 HOH HOH . 
H 4 HOH B 17 1017 43 HOH HOH . 
H 4 HOH B 18 1018 87 HOH HOH . 
H 4 HOH B 19 1019 65 HOH HOH . 
H 4 HOH B 20 1020 32 HOH HOH . 
H 4 HOH B 21 1021 124 HOH HOH . 
H 4 HOH B 22 1022 81 HOH HOH . 
H 4 HOH B 23 1023 12 HOH HOH . 
H 4 HOH B 24 1024 68 HOH HOH . 
H 4 HOH B 25 1025 34 HOH HOH . 
H 4 HOH B 26 1026 47 HOH HOH . 
H 4 HOH B 27 1027 17 HOH HOH . 
H 4 HOH B 28 1028 7 HOH HOH . 
H 4 HOH B 29 1029 78 HOH HOH . 
H 4 HOH B 30 1030 37 HOH HOH . 
H 4 HOH B 31 1031 119 HOH HOH . 
H 4 HOH B 32 1032 33 HOH HOH . 
H 4 HOH B 33 1033 38 HOH HOH . 
H 4 HOH B 34 1034 30 HOH HOH . 
H 4 HOH B 35 1035 62 HOH HOH . 
H 4 HOH B 36 1036 121 HOH HOH . 
H 4 HOH B 37 1037 22 HOH HOH . 
H 4 HOH B 38 1038 107 HOH HOH . 
H 4 HOH B 39 1039 102 HOH HOH . 
H 4 HOH B 40 1040 110 HOH HOH . 
H 4 HOH B 41 1041 59 HOH HOH . 
H 4 HOH B 42 1042 54 HOH HOH . 
H 4 HOH B 43 1043 36 HOH HOH . 
H 4 HOH B 44 1044 58 HOH HOH . 
H 4 HOH B 45 1045 73 HOH HOH . 
H 4 HOH B 46 1046 18 HOH HOH . 
H 4 HOH B 47 1047 28 HOH HOH . 
H 4 HOH B 48 1048 117 HOH HOH . 
H 4 HOH B 49 1049 75 HOH HOH . 
H 4 HOH B 50 1050 41 HOH HOH . 
H 4 HOH B 51 1051 20 HOH HOH . 
H 4 HOH B 52 1052 16 HOH HOH . 
H 4 HOH B 53 1053 104 HOH HOH . 
H 4 HOH B 54 1054 50 HOH HOH . 
H 4 HOH B 55 1055 95 HOH HOH . 
H 4 HOH B 56 1056 122 HOH HOH . 
H 4 HOH B 57 1057 46 HOH HOH . 
H 4 HOH B 58 1058 76 HOH HOH . 
I 4 HOH C 1 701 42 HOH HOH . 
I 4 HOH C 2 702 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 5HX . . . E 3 20.245 -2.727 10.727 1 26.44 ? C01 5HX 900 A 1 
HETATM 2 C C02 5HX . . . E 3 18.816 -3.214 10.817 1 26.98 ? C02 5HX 900 A 1 
HETATM 3 C C03 5HX . . . E 3 18.185 -3.487 9.455 1 26.96 ? C03 5HX 900 A 1 
HETATM 4 C C04 5HX . . . E 3 19.086 -3.862 8.268 1 27.23 ? C04 5HX 900 A 1 
HETATM 5 C C05 5HX . . . E 3 19.55 -5.322 8.259 1 27.56 ? C05 5HX 900 A 1 
HETATM 6 C C06 5HX . . . E 3 20.44 -5.683 9.447 1 27.4 ? C06 5HX 900 A 1 
HETATM 7 C C07 5HX . . . E 3 21.529 -4.641 9.649 1 27.3 ? C07 5HX 900 A 1 
HETATM 8 C C08 5HX . . . E 3 21.066 -3.19 9.507 1 26.58 ? C08 5HX 900 A 1 
HETATM 9 C C09 5HX . . . E 3 20.302 -2.969 8.196 1 26.88 ? C09 5HX 900 A 1 
HETATM 10 C C10 5HX . . . E 3 20.668 -2.207 7.121 1 27.35 ? C10 5HX 900 A 1 
HETATM 11 C C11 5HX . . . E 3 21.775 -1.455 7.146 1 26.06 ? C11 5HX 900 A 1 
HETATM 12 C C12 5HX . . . E 3 19.832 -1.859 6.103 1 28.07 ? C12 5HX 900 A 1 
HETATM 13 C C13 5HX . . . E 3 21.736 -0.151 7.411 1 25.8 ? C13 5HX 900 A 1 
HETATM 14 C C14 5HX . . . E 3 22.814 0.615 7.431 1 26.96 ? C14 5HX 900 A 1 
HETATM 15 C C15 5HX . . . E 3 23.994 0.079 7.181 1 26.81 ? C15 5HX 900 A 1 
HETATM 16 C C16 5HX . . . E 3 24.057 -1.207 6.905 1 26.95 ? C16 5HX 900 A 1 
HETATM 17 C C17 5HX . . . E 3 22.974 -1.95 6.884 1 26.9 ? C17 5HX 900 A 1 
HETATM 18 C C18 5HX . . . E 3 20.274 -1.671 4.858 1 27.87 ? C18 5HX 900 A 1 
HETATM 19 C C19 5HX . . . E 3 19.504 -1.31 3.853 1 28.14 ? C19 5HX 900 A 1 
HETATM 20 C C20 5HX . . . E 3 18.214 -1.073 4.018 1 29.35 ? C20 5HX 900 A 1 
HETATM 21 C C21 5HX . . . E 3 17.743 -1.23 5.237 1 28.79 ? C21 5HX 900 A 1 
HETATM 22 C C22 5HX . . . E 3 18.54 -1.582 6.231 1 28.49 ? C22 5HX 900 A 1 
HETATM 23 O O01 5HX . . . E 3 17.421 -0.699 3.032 1 29.75 ? O01 5HX 900 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           23 
#