data_5DXP # _model_server_result.job_id lqirn8cLviZJkGznrB6s9w _model_server_result.datetime_utc '2024-11-25 13:36:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5DXP # _exptl.entry_id 5DXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(phenyl)methyl]phenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.79 _cell.angle_gamma 90 _cell.entry_id 5DXP _cell.length_a 53.038 _cell.length_b 77.203 _cell.length_c 58.208 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C22 H24 O' _chem_comp.formula_weight 304.425 _chem_comp.id 5HX _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(phenyl)methyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 5HX sing 1 n n C02 C03 5HX sing 2 n n C01 C08 5HX sing 3 n n C03 C04 5HX sing 4 n n C08 C07 5HX sing 5 n n C08 C09 5HX sing 6 n n C04 C09 5HX sing 7 n n C04 C05 5HX sing 8 n n C07 C06 5HX sing 9 n n C06 C05 5HX sing 10 n n C09 C10 5HX doub 11 n n C22 C21 5HX doub 12 n y C22 C12 5HX sing 13 n y C21 C20 5HX sing 14 n y C10 C12 5HX sing 15 n n C10 C11 5HX sing 16 n n C13 C11 5HX doub 17 n y C13 C14 5HX sing 18 n y C12 C18 5HX doub 19 n y C11 C17 5HX sing 20 n y C14 C15 5HX doub 21 n y C20 O01 5HX sing 22 n n C20 C19 5HX doub 23 n y C17 C16 5HX doub 24 n y C18 C19 5HX sing 25 n y C15 C16 5HX sing 26 n y C01 H1 5HX sing 27 n n C01 H2 5HX sing 28 n n C02 H3 5HX sing 29 n n C02 H4 5HX sing 30 n n C03 H5 5HX sing 31 n n C03 H6 5HX sing 32 n n C04 H7 5HX sing 33 n n C05 H8 5HX sing 34 n n C05 H9 5HX sing 35 n n C06 H10 5HX sing 36 n n C06 H11 5HX sing 37 n n C07 H12 5HX sing 38 n n C07 H13 5HX sing 39 n n C08 H14 5HX sing 40 n n C13 H17 5HX sing 41 n n C14 H18 5HX sing 42 n n C15 H19 5HX sing 43 n n C16 H20 5HX sing 44 n n C17 H21 5HX sing 45 n n C18 H22 5HX sing 46 n n C19 H23 5HX sing 47 n n C21 H24 5HX sing 48 n n C22 H25 5HX sing 49 n n O01 H26 5HX sing 50 n n # _atom_sites.entry_id 5DXP _atom_sites.fract_transf_matrix[1][1] 0.018854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5HX A 1 900 900 5HX UNK . F 3 5HX B 1 901 901 5HX UNK . G 4 HOH A 1 1001 113 HOH HOH . G 4 HOH A 2 1002 70 HOH HOH . G 4 HOH A 3 1003 10 HOH HOH . G 4 HOH A 4 1004 69 HOH HOH . G 4 HOH A 5 1005 55 HOH HOH . G 4 HOH A 6 1006 4 HOH HOH . G 4 HOH A 7 1007 56 HOH HOH . G 4 HOH A 8 1008 92 HOH HOH . G 4 HOH A 9 1009 14 HOH HOH . G 4 HOH A 10 1010 88 HOH HOH . G 4 HOH A 11 1011 29 HOH HOH . G 4 HOH A 12 1012 49 HOH HOH . G 4 HOH A 13 1013 74 HOH HOH . G 4 HOH A 14 1014 6 HOH HOH . G 4 HOH A 15 1015 35 HOH HOH . G 4 HOH A 16 1016 60 HOH HOH . G 4 HOH A 17 1017 15 HOH HOH . G 4 HOH A 18 1018 106 HOH HOH . G 4 HOH A 19 1019 64 HOH HOH . G 4 HOH A 20 1020 71 HOH HOH . G 4 HOH A 21 1021 115 HOH HOH . G 4 HOH A 22 1022 40 HOH HOH . G 4 HOH A 23 1023 66 HOH HOH . G 4 HOH A 24 1024 91 HOH HOH . G 4 HOH A 25 1025 52 HOH HOH . G 4 HOH A 26 1026 8 HOH HOH . G 4 HOH A 27 1027 13 HOH HOH . G 4 HOH A 28 1028 1 HOH HOH . G 4 HOH A 29 1029 72 HOH HOH . G 4 HOH A 30 1030 5 HOH HOH . G 4 HOH A 31 1031 57 HOH HOH . G 4 HOH A 32 1032 25 HOH HOH . G 4 HOH A 33 1033 86 HOH HOH . G 4 HOH A 34 1034 2 HOH HOH . G 4 HOH A 35 1035 114 HOH HOH . G 4 HOH A 36 1036 26 HOH HOH . G 4 HOH A 37 1037 89 HOH HOH . G 4 HOH A 38 1038 105 HOH HOH . G 4 HOH A 39 1039 90 HOH HOH . G 4 HOH A 40 1040 61 HOH HOH . G 4 HOH A 41 1041 101 HOH HOH . G 4 HOH A 42 1042 45 HOH HOH . G 4 HOH A 43 1043 83 HOH HOH . G 4 HOH A 44 1044 11 HOH HOH . G 4 HOH A 45 1045 67 HOH HOH . G 4 HOH A 46 1046 24 HOH HOH . G 4 HOH A 47 1047 84 HOH HOH . G 4 HOH A 48 1048 27 HOH HOH . G 4 HOH A 49 1049 23 HOH HOH . G 4 HOH A 50 1050 63 HOH HOH . G 4 HOH A 51 1051 120 HOH HOH . G 4 HOH A 52 1052 53 HOH HOH . G 4 HOH A 53 1053 111 HOH HOH . G 4 HOH A 54 1054 80 HOH HOH . G 4 HOH A 55 1055 97 HOH HOH . G 4 HOH A 56 1056 118 HOH HOH . G 4 HOH A 57 1057 112 HOH HOH . G 4 HOH A 58 1058 109 HOH HOH . G 4 HOH A 59 1059 94 HOH HOH . G 4 HOH A 60 1060 39 HOH HOH . G 4 HOH A 61 1061 123 HOH HOH . G 4 HOH A 62 1062 77 HOH HOH . G 4 HOH A 63 1063 116 HOH HOH . G 4 HOH A 64 1064 9 HOH HOH . H 4 HOH B 1 1001 100 HOH HOH . H 4 HOH B 2 1002 48 HOH HOH . H 4 HOH B 3 1003 103 HOH HOH . H 4 HOH B 4 1004 99 HOH HOH . H 4 HOH B 5 1005 19 HOH HOH . H 4 HOH B 6 1006 79 HOH HOH . H 4 HOH B 7 1007 44 HOH HOH . H 4 HOH B 8 1008 98 HOH HOH . H 4 HOH B 9 1009 96 HOH HOH . H 4 HOH B 10 1010 21 HOH HOH . H 4 HOH B 11 1011 51 HOH HOH . H 4 HOH B 12 1012 3 HOH HOH . H 4 HOH B 13 1013 108 HOH HOH . H 4 HOH B 14 1014 31 HOH HOH . H 4 HOH B 15 1015 82 HOH HOH . H 4 HOH B 16 1016 85 HOH HOH . H 4 HOH B 17 1017 43 HOH HOH . H 4 HOH B 18 1018 87 HOH HOH . H 4 HOH B 19 1019 65 HOH HOH . H 4 HOH B 20 1020 32 HOH HOH . H 4 HOH B 21 1021 124 HOH HOH . H 4 HOH B 22 1022 81 HOH HOH . H 4 HOH B 23 1023 12 HOH HOH . H 4 HOH B 24 1024 68 HOH HOH . H 4 HOH B 25 1025 34 HOH HOH . H 4 HOH B 26 1026 47 HOH HOH . H 4 HOH B 27 1027 17 HOH HOH . H 4 HOH B 28 1028 7 HOH HOH . H 4 HOH B 29 1029 78 HOH HOH . H 4 HOH B 30 1030 37 HOH HOH . H 4 HOH B 31 1031 119 HOH HOH . H 4 HOH B 32 1032 33 HOH HOH . H 4 HOH B 33 1033 38 HOH HOH . H 4 HOH B 34 1034 30 HOH HOH . H 4 HOH B 35 1035 62 HOH HOH . H 4 HOH B 36 1036 121 HOH HOH . H 4 HOH B 37 1037 22 HOH HOH . H 4 HOH B 38 1038 107 HOH HOH . H 4 HOH B 39 1039 102 HOH HOH . H 4 HOH B 40 1040 110 HOH HOH . H 4 HOH B 41 1041 59 HOH HOH . H 4 HOH B 42 1042 54 HOH HOH . H 4 HOH B 43 1043 36 HOH HOH . H 4 HOH B 44 1044 58 HOH HOH . H 4 HOH B 45 1045 73 HOH HOH . H 4 HOH B 46 1046 18 HOH HOH . H 4 HOH B 47 1047 28 HOH HOH . H 4 HOH B 48 1048 117 HOH HOH . H 4 HOH B 49 1049 75 HOH HOH . H 4 HOH B 50 1050 41 HOH HOH . H 4 HOH B 51 1051 20 HOH HOH . H 4 HOH B 52 1052 16 HOH HOH . H 4 HOH B 53 1053 104 HOH HOH . H 4 HOH B 54 1054 50 HOH HOH . H 4 HOH B 55 1055 95 HOH HOH . H 4 HOH B 56 1056 122 HOH HOH . H 4 HOH B 57 1057 46 HOH HOH . H 4 HOH B 58 1058 76 HOH HOH . I 4 HOH C 1 701 42 HOH HOH . I 4 HOH C 2 702 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5HX . . . F 3 14.749 5.76 32.256 1 30.39 ? C01 5HX 901 B 1 HETATM 2 C C02 5HX . . . F 3 14.307 7.052 31.554 1 30.63 ? C02 5HX 901 B 1 HETATM 3 C C03 5HX . . . F 3 13.298 7.875 32.372 1 30.74 ? C03 5HX 901 B 1 HETATM 4 C C04 5HX . . . F 3 13.403 7.776 33.91 1 29.65 ? C04 5HX 901 B 1 HETATM 5 C C05 5HX . . . F 3 14.502 8.657 34.547 1 29.79 ? C05 5HX 901 B 1 HETATM 6 C C06 5HX . . . F 3 15.949 8.218 34.3 1 29.7 ? C06 5HX 901 B 1 HETATM 7 C C07 5HX . . . F 3 16.123 6.691 34.266 1 30.59 ? C07 5HX 901 B 1 HETATM 8 C C08 5HX . . . F 3 14.912 5.857 33.789 1 30.49 ? C08 5HX 901 B 1 HETATM 9 C C09 5HX . . . F 3 13.589 6.338 34.387 1 29.01 ? C09 5HX 901 B 1 HETATM 10 C C10 5HX . . . F 3 12.783 5.626 35.233 1 30.16 ? C10 5HX 901 B 1 HETATM 11 C C11 5HX . . . F 3 13.223 4.491 35.843 1 32.87 ? C11 5HX 901 B 1 HETATM 12 C C12 5HX . . . F 3 11.494 5.965 35.536 1 30.16 ? C12 5HX 901 B 1 HETATM 13 C C13 5HX . . . F 3 12.695 3.287 35.519 1 33.73 ? C13 5HX 901 B 1 HETATM 14 C C14 5HX . . . F 3 13.096 2.142 36.096 1 34.4 ? C14 5HX 901 B 1 HETATM 15 C C15 5HX . . . F 3 14.052 2.163 37.036 1 34.88 ? C15 5HX 901 B 1 HETATM 16 C C16 5HX . . . F 3 14.597 3.337 37.386 1 34.56 ? C16 5HX 901 B 1 HETATM 17 C C17 5HX . . . F 3 14.18 4.47 36.798 1 33.99 ? C17 5HX 901 B 1 HETATM 18 C C18 5HX . . . F 3 11.086 6.025 36.828 1 30.05 ? C18 5HX 901 B 1 HETATM 19 C C19 5HX . . . F 3 9.829 6.343 37.18 1 30.5 ? C19 5HX 901 B 1 HETATM 20 C C20 5HX . . . F 3 8.892 6.617 36.257 1 30.44 ? C20 5HX 901 B 1 HETATM 21 C C21 5HX . . . F 3 9.272 6.558 34.97 1 29.84 ? C21 5HX 901 B 1 HETATM 22 C C22 5HX . . . F 3 10.53 6.234 34.627 1 29.65 ? C22 5HX 901 B 1 HETATM 23 O O01 5HX . . . F 3 7.617 6.941 36.601 1 29.86 ? O01 5HX 901 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #