data_5DXQ
#
_model_server_result.job_id            CQSEQQWwongtUhm5YF3ukA 
_model_server_result.datetime_utc      '2024-10-16 08:03:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dxq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    5DXQ 
#
_exptl.entry_id    5DXQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              320.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4,4'-[(1s,5s)-bicyclo[3.3.1]non-9-ylidenemethanediyl]diphenol" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.09 
_cell.angle_gamma         90 
_cell.entry_id            5DXQ 
_cell.length_a            53.91 
_cell.length_b            81.07 
_cell.length_c            58.34 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DXQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C22 H24 O2' 
_chem_comp.formula_weight    320.425 
_chem_comp.id                5HZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4,4'-[(1s,5s)-bicyclo[3.3.1]non-9-ylidenemethanediyl]diphenol" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C20 5HZ sing 1 n n 
C19 C20 5HZ doub 2 n y 
C19 C18 5HZ sing 3 n y 
C20 C21 5HZ sing 4 n y 
C18 C12 5HZ doub 5 n y 
C21 C22 5HZ doub 6 n y 
C12 C22 5HZ sing 7 n y 
C12 C10 5HZ sing 8 n n 
C17 C16 5HZ doub 9 n y 
C17 C11 5HZ sing 10 n y 
C16 C15 5HZ sing 11 n y 
C10 C11 5HZ sing 12 n n 
C10 C09 5HZ doub 13 n n 
C11 C13 5HZ doub 14 n y 
C15 O02 5HZ sing 15 n n 
C15 C14 5HZ doub 16 n y 
C13 C14 5HZ sing 17 n y 
C05 C04 5HZ sing 18 n n 
C05 C06 5HZ sing 19 n n 
C09 C04 5HZ sing 20 n n 
C09 C08 5HZ sing 21 n n 
C04 C03 5HZ sing 22 n n 
C06 C07 5HZ sing 23 n n 
C03 C02 5HZ sing 24 n n 
C08 C07 5HZ sing 25 n n 
C08 C01 5HZ sing 26 n n 
C01 C02 5HZ sing 27 n n 
C01 H1 5HZ sing 28 n n 
C01 H2 5HZ sing 29 n n 
C02 H3 5HZ sing 30 n n 
C02 H4 5HZ sing 31 n n 
C03 H5 5HZ sing 32 n n 
C03 H6 5HZ sing 33 n n 
C04 H7 5HZ sing 34 n n 
C05 H8 5HZ sing 35 n n 
C05 H9 5HZ sing 36 n n 
C06 H10 5HZ sing 37 n n 
C06 H11 5HZ sing 38 n n 
C07 H12 5HZ sing 39 n n 
C07 H13 5HZ sing 40 n n 
C08 H14 5HZ sing 41 n n 
C13 H17 5HZ sing 42 n n 
C14 H18 5HZ sing 43 n n 
C16 H19 5HZ sing 44 n n 
C17 H20 5HZ sing 45 n n 
C18 H21 5HZ sing 46 n n 
C19 H22 5HZ sing 47 n n 
C21 H23 5HZ sing 48 n n 
C22 H24 5HZ sing 49 n n 
O01 H25 5HZ sing 50 n n 
O02 H26 5HZ sing 51 n n 
#
_atom_sites.entry_id                     5DXQ 
_atom_sites.fract_transf_matrix[1][1]    0.018549 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007154 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 5HZ A 1 900 900 5HZ 5HZ . 
F 3 5HZ B 1 901 901 5HZ 5HZ . 
G 4 HOH A 1 1001 1001 HOH HOH . 
G 4 HOH A 2 1002 1002 HOH HOH . 
G 4 HOH A 3 1003 1004 HOH HOH . 
G 4 HOH A 4 1004 1003 HOH HOH . 
G 4 HOH A 5 1005 1005 HOH HOH . 
G 4 HOH A 6 1006 1006 HOH HOH . 
G 4 HOH A 7 1007 1007 HOH HOH . 
G 4 HOH A 8 1008 1009 HOH HOH . 
G 4 HOH A 9 1009 1008 HOH HOH . 
G 4 HOH A 10 1010 1011 HOH HOH . 
G 4 HOH A 11 1011 1010 HOH HOH . 
G 4 HOH A 12 1012 1012 HOH HOH . 
G 4 HOH A 13 1013 1013 HOH HOH . 
G 4 HOH A 14 1014 1015 HOH HOH . 
G 4 HOH A 15 1015 1022 HOH HOH . 
G 4 HOH A 16 1016 1017 HOH HOH . 
G 4 HOH A 17 1017 1018 HOH HOH . 
G 4 HOH A 18 1018 1020 HOH HOH . 
G 4 HOH A 19 1019 1023 HOH HOH . 
G 4 HOH A 20 1020 1016 HOH HOH . 
G 4 HOH A 21 1021 1019 HOH HOH . 
G 4 HOH A 22 1022 1024 HOH HOH . 
G 4 HOH A 23 1023 1026 HOH HOH . 
G 4 HOH A 24 1024 1021 HOH HOH . 
G 4 HOH A 25 1025 1025 HOH HOH . 
G 4 HOH A 26 1026 1028 HOH HOH . 
G 4 HOH A 27 1027 1027 HOH HOH . 
G 4 HOH A 28 1028 1032 HOH HOH . 
G 4 HOH A 29 1029 1030 HOH HOH . 
G 4 HOH A 30 1030 1029 HOH HOH . 
G 4 HOH A 31 1031 1031 HOH HOH . 
G 4 HOH A 32 1032 1037 HOH HOH . 
G 4 HOH A 33 1033 1033 HOH HOH . 
G 4 HOH A 34 1034 1035 HOH HOH . 
G 4 HOH A 35 1035 1034 HOH HOH . 
G 4 HOH A 36 1036 1038 HOH HOH . 
G 4 HOH A 37 1037 1041 HOH HOH . 
G 4 HOH A 38 1038 1042 HOH HOH . 
G 4 HOH A 39 1039 1043 HOH HOH . 
G 4 HOH A 40 1040 1040 HOH HOH . 
G 4 HOH A 41 1041 1039 HOH HOH . 
G 4 HOH A 42 1042 1036 HOH HOH . 
G 4 HOH A 43 1043 1044 HOH HOH . 
G 4 HOH A 44 1044 1045 HOH HOH . 
G 4 HOH A 45 1045 1046 HOH HOH . 
G 4 HOH A 46 1046 1047 HOH HOH . 
G 4 HOH A 47 1047 1048 HOH HOH . 
G 4 HOH A 48 1048 1049 HOH HOH . 
H 4 HOH B 1 1001 1002 HOH HOH . 
H 4 HOH B 2 1002 1001 HOH HOH . 
H 4 HOH B 3 1003 1006 HOH HOH . 
H 4 HOH B 4 1004 1003 HOH HOH . 
H 4 HOH B 5 1005 1004 HOH HOH . 
H 4 HOH B 6 1006 1009 HOH HOH . 
H 4 HOH B 7 1007 1010 HOH HOH . 
H 4 HOH B 8 1008 1008 HOH HOH . 
H 4 HOH B 9 1009 1007 HOH HOH . 
H 4 HOH B 10 1010 1012 HOH HOH . 
H 4 HOH B 11 1011 1005 HOH HOH . 
H 4 HOH B 12 1012 1013 HOH HOH . 
H 4 HOH B 13 1013 1011 HOH HOH . 
H 4 HOH B 14 1014 1018 HOH HOH . 
H 4 HOH B 15 1015 1017 HOH HOH . 
H 4 HOH B 16 1016 1014 HOH HOH . 
H 4 HOH B 17 1017 1015 HOH HOH . 
H 4 HOH B 18 1018 1014 HOH HOH . 
H 4 HOH B 19 1019 1020 HOH HOH . 
H 4 HOH B 20 1020 1016 HOH HOH . 
H 4 HOH B 21 1021 1025 HOH HOH . 
H 4 HOH B 22 1022 1026 HOH HOH . 
H 4 HOH B 23 1023 1027 HOH HOH . 
H 4 HOH B 24 1024 1028 HOH HOH . 
H 4 HOH B 25 1025 1021 HOH HOH . 
H 4 HOH B 26 1026 1024 HOH HOH . 
H 4 HOH B 27 1027 1022 HOH HOH . 
H 4 HOH B 28 1028 1035 HOH HOH . 
H 4 HOH B 29 1029 1019 HOH HOH . 
H 4 HOH B 30 1030 1034 HOH HOH . 
H 4 HOH B 31 1031 1023 HOH HOH . 
H 4 HOH B 32 1032 1030 HOH HOH . 
H 4 HOH B 33 1033 1032 HOH HOH . 
H 4 HOH B 34 1034 1031 HOH HOH . 
H 4 HOH B 35 1035 1029 HOH HOH . 
H 4 HOH B 36 1036 1033 HOH HOH . 
H 4 HOH B 37 1037 1037 HOH HOH . 
H 4 HOH B 38 1038 1038 HOH HOH . 
H 4 HOH B 39 1039 1036 HOH HOH . 
H 4 HOH B 40 1040 1039 HOH HOH . 
H 4 HOH B 41 1041 1040 HOH HOH . 
H 4 HOH B 42 1042 1041 HOH HOH . 
H 4 HOH B 43 1043 1042 HOH HOH . 
H 4 HOH B 44 1044 1043 HOH HOH . 
H 4 HOH B 45 1045 1045 HOH HOH . 
H 4 HOH B 46 1046 1044 HOH HOH . 
H 4 HOH B 47 1047 1046 HOH HOH . 
H 4 HOH B 48 1048 1047 HOH HOH . 
H 4 HOH B 49 1049 1048 HOH HOH . 
H 4 HOH B 50 1050 1049 HOH HOH . 
H 4 HOH B 51 1051 1050 HOH HOH . 
H 4 HOH B 52 1052 1051 HOH HOH . 
I 4 HOH C 1 701 1052 HOH HOH . 
J 4 HOH D 1 701 1053 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 5HZ . . . F 3 12.897 8.767 32.045 1 30.57 ? C01 5HZ 901 B 1 
HETATM 2 C C02 5HZ . . . F 3 14.247 8.226 31.815 1 29.96 ? C02 5HZ 901 B 1 
HETATM 3 C C03 5HZ . . . F 3 14.348 6.792 32.151 1 30.61 ? C03 5HZ 901 B 1 
HETATM 4 C C04 5HZ . . . F 3 13.215 5.966 31.592 1 31.11 ? C04 5HZ 901 B 1 
HETATM 5 C C05 5HZ . . . F 3 13.345 5.935 30.063 1 31.63 ? C05 5HZ 901 B 1 
HETATM 6 C C06 5HZ . . . F 3 12.347 6.881 29.195 1 14.33 ? C06 5HZ 901 B 1 
HETATM 7 C C07 5HZ . . . F 3 11.595 8 30.081 1 29.99 ? C07 5HZ 901 B 1 
HETATM 8 C C08 5HZ . . . F 3 11.751 7.888 31.594 1 30.49 ? C08 5HZ 901 B 1 
HETATM 9 C C09 5HZ . . . F 3 11.852 6.438 31.94 1 30.92 ? C09 5HZ 901 B 1 
HETATM 10 C C10 5HZ . . . F 3 11.346 6.074 33.342 1 27.83 ? C10 5HZ 901 B 1 
HETATM 11 C C11 5HZ . . . F 3 9.856 6.267 33.523 1 28.77 ? C11 5HZ 901 B 1 
HETATM 12 C C12 5HZ . . . F 3 11.802 4.747 33.858 1 27.35 ? C12 5HZ 901 B 1 
HETATM 13 C C13 5HZ . . . F 3 9.278 6.031 34.744 1 28.78 ? C13 5HZ 901 B 1 
HETATM 14 C C14 5HZ . . . F 3 7.949 6.203 34.955 1 26.92 ? C14 5HZ 901 B 1 
HETATM 15 C C15 5HZ . . . F 3 7.189 6.625 33.93 1 27.4 ? C15 5HZ 901 B 1 
HETATM 16 C C16 5HZ . . . F 3 7.742 6.872 32.714 1 27.35 ? C16 5HZ 901 B 1 
HETATM 17 C C17 5HZ . . . F 3 9.069 6.701 32.512 1 27.68 ? C17 5HZ 901 B 1 
HETATM 18 C C18 5HZ . . . F 3 11.221 3.577 33.459 1 27.2 ? C18 5HZ 901 B 1 
HETATM 19 C C19 5HZ . . . F 3 11.659 2.405 33.975 1 26.17 ? C19 5HZ 901 B 1 
HETATM 20 C C20 5HZ . . . F 3 12.679 2.425 34.879 1 27.82 ? C20 5HZ 901 B 1 
HETATM 21 C C21 5HZ . . . F 3 13.266 3.584 35.287 1 28 ? C21 5HZ 901 B 1 
HETATM 22 C C22 5HZ . . . F 3 12.821 4.75 34.765 1 27.24 ? C22 5HZ 901 B 1 
HETATM 23 O O01 5HZ . . . F 3 13.143 1.261 35.415 1 28.55 ? O01 5HZ 901 B 1 
HETATM 24 O O02 5HZ . . . F 3 5.849 6.801 34.11 1 28.09 ? O02 5HZ 901 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#