data_5DXT # _model_server_result.job_id VEjmw91PLyt_sKoyxwTEcw _model_server_result.datetime_utc '2025-01-22 18:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5DXT # _exptl.entry_id 5DXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DXT _cell.length_a 58.507 _cell.length_b 133.672 _cell.length_c 141.339 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N6 O3' _chem_comp.formula_weight 382.416 _chem_comp.id 5H5 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GDC-0326 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N23 5H5 sing 1 n y C24 N25 5H5 doub 2 n y N23 C22 5H5 doub 3 n y N25 N26 5H5 sing 4 n y C22 N26 5H5 sing 5 n y C22 C16 5H5 sing 6 n n N26 C27 5H5 sing 7 n n C29 C27 5H5 sing 8 n n C15 C16 5H5 doub 9 n y C15 N14 5H5 sing 10 n y C16 N17 5H5 sing 11 n y C27 C28 5H5 sing 12 n n N14 C13 5H5 sing 13 n n N14 C18 5H5 sing 14 n y N17 C18 5H5 doub 15 n y C13 C12 5H5 sing 16 n n C12 O11 5H5 sing 17 n n C18 C19 5H5 sing 18 n n C19 C20 5H5 doub 19 n y C19 C10 5H5 sing 20 n y O11 C10 5H5 sing 21 n n C20 C21 5H5 sing 22 n y C10 C9 5H5 doub 23 n y N1 C2 5H5 sing 24 n n C21 C8 5H5 doub 25 n y C9 C8 5H5 sing 26 n y C8 O7 5H5 sing 27 n n C2 O3 5H5 doub 28 n n C2 C4 5H5 sing 29 n n O7 C4 5H5 sing 30 n n C4 C6 5H5 sing 31 n n C4 H1 5H5 sing 32 n n C6 H2 5H5 sing 33 n n C6 H3 5H5 sing 34 n n C6 H4 5H5 sing 35 n n C12 H5 5H5 sing 36 n n C12 H6 5H5 sing 37 n n C15 H7 5H5 sing 38 n n C21 H8 5H5 sing 39 n n C24 H9 5H5 sing 40 n n C27 H10 5H5 sing 41 n n N1 H11 5H5 sing 42 n n N1 H12 5H5 sing 43 n n C9 H13 5H5 sing 44 n n C13 H14 5H5 sing 45 n n C13 H15 5H5 sing 46 n n C20 H16 5H5 sing 47 n n C28 H17 5H5 sing 48 n n C28 H18 5H5 sing 49 n n C28 H19 5H5 sing 50 n n C29 H20 5H5 sing 51 n n C29 H21 5H5 sing 52 n n C29 H22 5H5 sing 53 n n # _atom_sites.entry_id 5DXT _atom_sites.fract_transf_matrix[1][1] 0.017092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5H5 A 1 1101 1 5H5 INX . C 3 EDO A 1 1102 1 EDO EDO . D 4 HOH A 1 1201 3 HOH HOH . D 4 HOH A 2 1202 139 HOH HOH . D 4 HOH A 3 1203 125 HOH HOH . D 4 HOH A 4 1204 157 HOH HOH . D 4 HOH A 5 1205 136 HOH HOH . D 4 HOH A 6 1206 169 HOH HOH . D 4 HOH A 7 1207 96 HOH HOH . D 4 HOH A 8 1208 147 HOH HOH . D 4 HOH A 9 1209 66 HOH HOH . D 4 HOH A 10 1210 22 HOH HOH . D 4 HOH A 11 1211 63 HOH HOH . D 4 HOH A 12 1212 59 HOH HOH . D 4 HOH A 13 1213 1 HOH HOH . D 4 HOH A 14 1214 182 HOH HOH . D 4 HOH A 15 1215 126 HOH HOH . D 4 HOH A 16 1216 7 HOH HOH . D 4 HOH A 17 1217 27 HOH HOH . D 4 HOH A 18 1218 161 HOH HOH . D 4 HOH A 19 1219 177 HOH HOH . D 4 HOH A 20 1220 166 HOH HOH . D 4 HOH A 21 1221 15 HOH HOH . D 4 HOH A 22 1222 158 HOH HOH . D 4 HOH A 23 1223 11 HOH HOH . D 4 HOH A 24 1224 10 HOH HOH . D 4 HOH A 25 1225 4 HOH HOH . D 4 HOH A 26 1226 199 HOH HOH . D 4 HOH A 27 1227 143 HOH HOH . D 4 HOH A 28 1228 124 HOH HOH . D 4 HOH A 29 1229 79 HOH HOH . D 4 HOH A 30 1230 130 HOH HOH . D 4 HOH A 31 1231 21 HOH HOH . D 4 HOH A 32 1232 18 HOH HOH . D 4 HOH A 33 1233 127 HOH HOH . D 4 HOH A 34 1234 16 HOH HOH . D 4 HOH A 35 1235 13 HOH HOH . D 4 HOH A 36 1236 128 HOH HOH . D 4 HOH A 37 1237 129 HOH HOH . D 4 HOH A 38 1238 58 HOH HOH . D 4 HOH A 39 1239 14 HOH HOH . D 4 HOH A 40 1240 149 HOH HOH . D 4 HOH A 41 1241 170 HOH HOH . D 4 HOH A 42 1242 31 HOH HOH . D 4 HOH A 43 1243 103 HOH HOH . D 4 HOH A 44 1244 131 HOH HOH . D 4 HOH A 45 1245 189 HOH HOH . D 4 HOH A 46 1246 180 HOH HOH . D 4 HOH A 47 1247 105 HOH HOH . D 4 HOH A 48 1248 142 HOH HOH . D 4 HOH A 49 1249 164 HOH HOH . D 4 HOH A 50 1250 135 HOH HOH . D 4 HOH A 51 1251 44 HOH HOH . D 4 HOH A 52 1252 160 HOH HOH . D 4 HOH A 53 1253 71 HOH HOH . D 4 HOH A 54 1254 33 HOH HOH . D 4 HOH A 55 1255 100 HOH HOH . D 4 HOH A 56 1256 152 HOH HOH . D 4 HOH A 57 1257 51 HOH HOH . D 4 HOH A 58 1258 137 HOH HOH . D 4 HOH A 59 1259 133 HOH HOH . D 4 HOH A 60 1260 91 HOH HOH . D 4 HOH A 61 1261 43 HOH HOH . D 4 HOH A 62 1262 119 HOH HOH . D 4 HOH A 63 1263 26 HOH HOH . D 4 HOH A 64 1264 29 HOH HOH . D 4 HOH A 65 1265 134 HOH HOH . D 4 HOH A 66 1266 30 HOH HOH . D 4 HOH A 67 1267 122 HOH HOH . D 4 HOH A 68 1268 165 HOH HOH . D 4 HOH A 69 1269 99 HOH HOH . D 4 HOH A 70 1270 109 HOH HOH . D 4 HOH A 71 1271 98 HOH HOH . D 4 HOH A 72 1272 193 HOH HOH . D 4 HOH A 73 1273 202 HOH HOH . D 4 HOH A 74 1274 97 HOH HOH . D 4 HOH A 75 1275 47 HOH HOH . D 4 HOH A 76 1276 34 HOH HOH . D 4 HOH A 77 1277 114 HOH HOH . D 4 HOH A 78 1278 104 HOH HOH . D 4 HOH A 79 1279 110 HOH HOH . D 4 HOH A 80 1280 146 HOH HOH . D 4 HOH A 81 1281 48 HOH HOH . D 4 HOH A 82 1282 154 HOH HOH . D 4 HOH A 83 1283 20 HOH HOH . D 4 HOH A 84 1284 159 HOH HOH . D 4 HOH A 85 1285 69 HOH HOH . D 4 HOH A 86 1286 37 HOH HOH . D 4 HOH A 87 1287 65 HOH HOH . D 4 HOH A 88 1288 113 HOH HOH . D 4 HOH A 89 1289 111 HOH HOH . D 4 HOH A 90 1290 198 HOH HOH . D 4 HOH A 91 1291 2 HOH HOH . D 4 HOH A 92 1292 62 HOH HOH . D 4 HOH A 93 1293 107 HOH HOH . D 4 HOH A 94 1294 64 HOH HOH . D 4 HOH A 95 1295 150 HOH HOH . D 4 HOH A 96 1296 82 HOH HOH . D 4 HOH A 97 1297 172 HOH HOH . D 4 HOH A 98 1298 140 HOH HOH . D 4 HOH A 99 1299 101 HOH HOH . D 4 HOH A 100 1300 132 HOH HOH . D 4 HOH A 101 1301 162 HOH HOH . D 4 HOH A 102 1302 183 HOH HOH . D 4 HOH A 103 1303 52 HOH HOH . D 4 HOH A 104 1304 81 HOH HOH . D 4 HOH A 105 1305 45 HOH HOH . D 4 HOH A 106 1306 144 HOH HOH . D 4 HOH A 107 1307 141 HOH HOH . D 4 HOH A 108 1308 12 HOH HOH . D 4 HOH A 109 1309 53 HOH HOH . D 4 HOH A 110 1310 49 HOH HOH . D 4 HOH A 111 1311 23 HOH HOH . D 4 HOH A 112 1312 50 HOH HOH . D 4 HOH A 113 1313 171 HOH HOH . D 4 HOH A 114 1314 87 HOH HOH . D 4 HOH A 115 1315 24 HOH HOH . D 4 HOH A 116 1316 84 HOH HOH . D 4 HOH A 117 1317 73 HOH HOH . D 4 HOH A 118 1318 163 HOH HOH . D 4 HOH A 119 1319 6 HOH HOH . D 4 HOH A 120 1320 201 HOH HOH . D 4 HOH A 121 1321 173 HOH HOH . D 4 HOH A 122 1322 185 HOH HOH . D 4 HOH A 123 1323 176 HOH HOH . D 4 HOH A 124 1324 78 HOH HOH . D 4 HOH A 125 1325 38 HOH HOH . D 4 HOH A 126 1326 167 HOH HOH . D 4 HOH A 127 1327 120 HOH HOH . D 4 HOH A 128 1328 178 HOH HOH . D 4 HOH A 129 1329 67 HOH HOH . D 4 HOH A 130 1330 155 HOH HOH . D 4 HOH A 131 1331 148 HOH HOH . D 4 HOH A 132 1332 88 HOH HOH . D 4 HOH A 133 1333 75 HOH HOH . D 4 HOH A 134 1334 153 HOH HOH . D 4 HOH A 135 1335 5 HOH HOH . D 4 HOH A 136 1336 57 HOH HOH . D 4 HOH A 137 1337 168 HOH HOH . D 4 HOH A 138 1338 92 HOH HOH . D 4 HOH A 139 1339 80 HOH HOH . D 4 HOH A 140 1340 40 HOH HOH . D 4 HOH A 141 1341 95 HOH HOH . D 4 HOH A 142 1342 28 HOH HOH . D 4 HOH A 143 1343 179 HOH HOH . D 4 HOH A 144 1344 17 HOH HOH . D 4 HOH A 145 1345 138 HOH HOH . D 4 HOH A 146 1346 32 HOH HOH . D 4 HOH A 147 1347 8 HOH HOH . D 4 HOH A 148 1348 121 HOH HOH . D 4 HOH A 149 1349 54 HOH HOH . D 4 HOH A 150 1350 68 HOH HOH . D 4 HOH A 151 1351 74 HOH HOH . D 4 HOH A 152 1352 145 HOH HOH . D 4 HOH A 153 1353 106 HOH HOH . D 4 HOH A 154 1354 187 HOH HOH . D 4 HOH A 155 1355 70 HOH HOH . D 4 HOH A 156 1356 156 HOH HOH . D 4 HOH A 157 1357 9 HOH HOH . D 4 HOH A 158 1358 184 HOH HOH . D 4 HOH A 159 1359 60 HOH HOH . D 4 HOH A 160 1360 41 HOH HOH . D 4 HOH A 161 1361 90 HOH HOH . D 4 HOH A 162 1362 102 HOH HOH . D 4 HOH A 163 1363 72 HOH HOH . D 4 HOH A 164 1364 85 HOH HOH . D 4 HOH A 165 1365 39 HOH HOH . D 4 HOH A 166 1366 76 HOH HOH . D 4 HOH A 167 1367 46 HOH HOH . D 4 HOH A 168 1368 181 HOH HOH . D 4 HOH A 169 1369 196 HOH HOH . D 4 HOH A 170 1370 112 HOH HOH . D 4 HOH A 171 1371 192 HOH HOH . D 4 HOH A 172 1372 86 HOH HOH . D 4 HOH A 173 1373 93 HOH HOH . D 4 HOH A 174 1374 83 HOH HOH . D 4 HOH A 175 1375 36 HOH HOH . D 4 HOH A 176 1376 151 HOH HOH . D 4 HOH A 177 1377 56 HOH HOH . D 4 HOH A 178 1378 186 HOH HOH . D 4 HOH A 179 1379 77 HOH HOH . D 4 HOH A 180 1380 25 HOH HOH . D 4 HOH A 181 1381 195 HOH HOH . D 4 HOH A 182 1382 115 HOH HOH . D 4 HOH A 183 1383 108 HOH HOH . D 4 HOH A 184 1384 175 HOH HOH . D 4 HOH A 185 1385 188 HOH HOH . D 4 HOH A 186 1386 174 HOH HOH . D 4 HOH A 187 1387 42 HOH HOH . D 4 HOH A 188 1388 116 HOH HOH . D 4 HOH A 189 1389 117 HOH HOH . D 4 HOH A 190 1390 94 HOH HOH . D 4 HOH A 191 1391 194 HOH HOH . D 4 HOH A 192 1392 123 HOH HOH . D 4 HOH A 193 1393 35 HOH HOH . D 4 HOH A 194 1394 190 HOH HOH . D 4 HOH A 195 1395 19 HOH HOH . D 4 HOH A 196 1396 191 HOH HOH . D 4 HOH A 197 1397 197 HOH HOH . D 4 HOH A 198 1398 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5H5 . . . B 2 -21.025 16.086 31.773 1 60.15 ? C2 5H5 1101 A 1 HETATM 2 C C4 5H5 . . . B 2 -19.952 15.974 32.834 1 60.14 ? C4 5H5 1101 A 1 HETATM 3 C C6 5H5 . . . B 2 -20.295 16.885 34.017 1 59.63 ? C6 5H5 1101 A 1 HETATM 4 C C8 5H5 . . . B 2 -17.996 15.581 31.358 1 56.86 ? C8 5H5 1101 A 1 HETATM 5 C C12 5H5 . . . B 2 -14.353 15.906 28.342 1 55.11 ? C12 5H5 1101 A 1 HETATM 6 C C15 5H5 . . . B 2 -14.405 12.463 26.925 1 53.77 ? C15 5H5 1101 A 1 HETATM 7 C C16 5H5 . . . B 2 -15.475 11.631 27.029 1 55.85 ? C16 5H5 1101 A 1 HETATM 8 C C18 5H5 . . . B 2 -15.818 13.29 28.411 1 55.49 ? C18 5H5 1101 A 1 HETATM 9 C C19 5H5 . . . B 2 -16.514 14.13 29.436 1 54.9 ? C19 5H5 1101 A 1 HETATM 10 C C21 5H5 . . . B 2 -18.514 14.42 30.771 1 56.41 ? C21 5H5 1101 A 1 HETATM 11 C C24 5H5 . . . B 2 -15.266 8.804 24.836 1 55.22 ? C24 5H5 1101 A 1 HETATM 12 C C27 5H5 . . . B 2 -17.79 9.37 27.335 1 59.97 ? C27 5H5 1101 A 1 HETATM 13 N N1 5H5 . . . B 2 -20.883 16.949 30.748 1 60.88 ? N1 5H5 1101 A 1 HETATM 14 O O3 5H5 . . . B 2 -22.003 15.368 31.824 1 61.2 ? O3 5H5 1101 A 1 HETATM 15 O O7 5H5 . . . B 2 -18.662 16.332 32.298 1 57.3 ? O7 5H5 1101 A 1 HETATM 16 C C9 5H5 . . . B 2 -16.725 16.01 30.971 1 57.36 ? C9 5H5 1101 A 1 HETATM 17 C C10 5H5 . . . B 2 -15.977 15.315 30.029 1 55.53 ? C10 5H5 1101 A 1 HETATM 18 O O11 5H5 . . . B 2 -14.757 15.789 29.701 1 53.59 ? O11 5H5 1101 A 1 HETATM 19 C C13 5H5 . . . B 2 -13.664 14.612 27.953 1 53.2 ? C13 5H5 1101 A 1 HETATM 20 N N14 5H5 . . . B 2 -14.6 13.506 27.772 1 53.75 ? N14 5H5 1101 A 1 HETATM 21 N N17 5H5 . . . B 2 -16.295 12.175 27.936 1 55.57 ? N17 5H5 1101 A 1 HETATM 22 C C20 5H5 . . . B 2 -17.788 13.717 29.835 1 55.7 ? C20 5H5 1101 A 1 HETATM 23 C C22 5H5 . . . B 2 -15.669 10.37 26.28 1 54.4 ? C22 5H5 1101 A 1 HETATM 24 N N23 5H5 . . . B 2 -14.86 9.966 25.325 1 54.81 ? N23 5H5 1101 A 1 HETATM 25 N N25 5H5 . . . B 2 -16.344 8.433 25.468 1 55.98 ? N25 5H5 1101 A 1 HETATM 26 N N26 5H5 . . . B 2 -16.637 9.422 26.421 1 57.93 ? N26 5H5 1101 A 1 HETATM 27 C C28 5H5 . . . B 2 -17.719 8.105 28.192 1 59.63 ? C28 5H5 1101 A 1 HETATM 28 C C29 5H5 . . . B 2 -19.07 9.328 26.5 1 59.7 ? C29 5H5 1101 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #