data_5DXU # _model_server_result.job_id szQRM5lVneh-kYQsigkW2w _model_server_result.datetime_utc '2025-01-22 20:52:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5DXU # _exptl.entry_id 5DXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.416 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DXU _cell.length_a 91.049 _cell.length_b 108.749 _cell.length_c 142.427 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N6 O3' _chem_comp.formula_weight 382.416 _chem_comp.id 5H5 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GDC-0326 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N23 5H5 sing 1 n y C24 N25 5H5 doub 2 n y N23 C22 5H5 doub 3 n y N25 N26 5H5 sing 4 n y C22 N26 5H5 sing 5 n y C22 C16 5H5 sing 6 n n N26 C27 5H5 sing 7 n n C29 C27 5H5 sing 8 n n C15 C16 5H5 doub 9 n y C15 N14 5H5 sing 10 n y C16 N17 5H5 sing 11 n y C27 C28 5H5 sing 12 n n N14 C13 5H5 sing 13 n n N14 C18 5H5 sing 14 n y N17 C18 5H5 doub 15 n y C13 C12 5H5 sing 16 n n C12 O11 5H5 sing 17 n n C18 C19 5H5 sing 18 n n C19 C20 5H5 doub 19 n y C19 C10 5H5 sing 20 n y O11 C10 5H5 sing 21 n n C20 C21 5H5 sing 22 n y C10 C9 5H5 doub 23 n y N1 C2 5H5 sing 24 n n C21 C8 5H5 doub 25 n y C9 C8 5H5 sing 26 n y C8 O7 5H5 sing 27 n n C2 O3 5H5 doub 28 n n C2 C4 5H5 sing 29 n n O7 C4 5H5 sing 30 n n C4 C6 5H5 sing 31 n n C4 H1 5H5 sing 32 n n C6 H2 5H5 sing 33 n n C6 H3 5H5 sing 34 n n C6 H4 5H5 sing 35 n n C12 H5 5H5 sing 36 n n C12 H6 5H5 sing 37 n n C15 H7 5H5 sing 38 n n C21 H8 5H5 sing 39 n n C24 H9 5H5 sing 40 n n C27 H10 5H5 sing 41 n n N1 H11 5H5 sing 42 n n N1 H12 5H5 sing 43 n n C9 H13 5H5 sing 44 n n C13 H14 5H5 sing 45 n n C13 H15 5H5 sing 46 n n C20 H16 5H5 sing 47 n n C28 H17 5H5 sing 48 n n C28 H18 5H5 sing 49 n n C28 H19 5H5 sing 50 n n C29 H20 5H5 sing 51 n n C29 H21 5H5 sing 52 n n C29 H22 5H5 sing 53 n n # _atom_sites.entry_id 5DXU _atom_sites.fract_transf_matrix[1][1] 0.010983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5H5 A 1 1101 1 5H5 INX . D 4 HOH A 1 1201 1 HOH HOH . D 4 HOH A 2 1202 2 HOH HOH . D 4 HOH A 3 1203 4 HOH HOH . D 4 HOH A 4 1204 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5H5 . . . C 3 41.087 15.463 35.697 1 80.19 ? C2 5H5 1101 A 1 HETATM 2 C C4 5H5 . . . C 3 40.867 16.628 34.766 1 80.9 ? C4 5H5 1101 A 1 HETATM 3 C C6 5H5 . . . C 3 41.615 17.839 35.332 1 84.33 ? C6 5H5 1101 A 1 HETATM 4 C C8 5H5 . . . C 3 38.455 16.243 34.197 1 75.71 ? C8 5H5 1101 A 1 HETATM 5 C C12 5H5 . . . C 3 33.75 16.555 33.904 1 76.46 ? C12 5H5 1101 A 1 HETATM 6 C C15 5H5 . . . C 3 33.007 13.405 32.091 1 74.23 ? C15 5H5 1101 A 1 HETATM 7 C C16 5H5 . . . C 3 33.884 12.379 31.986 1 75.47 ? C16 5H5 1101 A 1 HETATM 8 C C18 5H5 . . . C 3 35.008 14.086 32.746 1 75.24 ? C18 5H5 1101 A 1 HETATM 9 C C19 5H5 . . . C 3 36.175 14.867 33.252 1 75.27 ? C19 5H5 1101 A 1 HETATM 10 C C21 5H5 . . . C 3 38.517 14.873 33.915 1 75.43 ? C21 5H5 1101 A 1 HETATM 11 C C24 5H5 . . . C 3 32.442 9.265 30.949 1 76.31 ? C24 5H5 1101 A 1 HETATM 12 C C27 5H5 . . . C 3 35.929 10.171 30.973 1 78.75 ? C27 5H5 1101 A 1 HETATM 13 N N1 5H5 . . . C 3 40.501 15.476 36.905 1 80.51 ? N1 5H5 1101 A 1 HETATM 14 O O3 5H5 . . . C 3 41.769 14.515 35.352 1 74.06 ? O3 5H5 1101 A 1 HETATM 15 O O7 5H5 . . . C 3 39.485 17.009 34.671 1 76.69 ? O7 5H5 1101 A 1 HETATM 16 C C9 5H5 . . . C 3 37.248 16.909 34.006 1 75.05 ? C9 5H5 1101 A 1 HETATM 17 C C10 5H5 . . . C 3 36.12 16.256 33.544 1 73.4 ? C10 5H5 1101 A 1 HETATM 18 O O11 5H5 . . . C 3 34.995 16.97 33.373 1 75.94 ? O11 5H5 1101 A 1 HETATM 19 C C13 5H5 . . . C 3 33.059 15.776 32.805 1 75.16 ? C13 5H5 1101 A 1 HETATM 20 N N14 5H5 . . . C 3 33.683 14.479 32.567 1 73.99 ? N14 5H5 1101 A 1 HETATM 21 N N17 5H5 . . . C 3 35.072 12.837 32.399 1 76.14 ? N17 5H5 1101 A 1 HETATM 22 C C20 5H5 . . . C 3 37.396 14.203 33.45 1 75.43 ? C20 5H5 1101 A 1 HETATM 23 C C22 5H5 . . . C 3 33.582 11.018 31.508 1 75 ? C22 5H5 1101 A 1 HETATM 24 N N23 5H5 . . . C 3 32.372 10.505 31.419 1 76.28 ? N23 5H5 1101 A 1 HETATM 25 N N25 5H5 . . . C 3 33.691 8.965 30.726 1 76.46 ? N25 5H5 1101 A 1 HETATM 26 N N26 5H5 . . . C 3 34.464 10.084 31.075 1 76.14 ? N26 5H5 1101 A 1 HETATM 27 C C28 5H5 . . . C 3 36.555 9.323 32.08 1 78.73 ? C28 5H5 1101 A 1 HETATM 28 C C29 5H5 . . . C 3 36.39 9.671 29.603 1 79.58 ? C29 5H5 1101 A 1 # _model_server_stats.io_time_ms 128 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #