data_5DY8
#
_model_server_result.job_id            U2pU8giYuhLGXftJYBUzVQ 
_model_server_result.datetime_utc      '2024-10-12 16:34:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dy8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    5DY8 
#
_exptl.entry_id    5DY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.414 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4,4'-{[(3S)-3-ethylcyclohexylidene]methanediyl}diphenol" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.28 
_cell.angle_gamma         90 
_cell.entry_id            5DY8 
_cell.length_a            54.379 
_cell.length_b            81.276 
_cell.length_c            58.23 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H24 O2' 
_chem_comp.formula_weight    308.414 
_chem_comp.id                5K4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4,4'-{[(3S)-3-ethylcyclohexylidene]methanediyl}diphenol" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 5K4 sing 1 n n 
C23 C02 5K4 doub 2 n y 
C23 C22 5K4 sing 3 n y 
C02 C03 5K4 sing 4 n y 
C22 C05 5K4 doub 5 n y 
C03 C04 5K4 doub 6 n y 
C05 C04 5K4 sing 7 n y 
C05 C06 5K4 sing 8 n n 
C06 C07 5K4 sing 9 n n 
C06 C14 5K4 doub 10 n n 
C13 C07 5K4 doub 11 n y 
C13 C12 5K4 sing 12 n y 
C07 C08 5K4 sing 13 n y 
C12 C10 5K4 doub 14 n y 
C08 C09 5K4 doub 15 n y 
C10 C09 5K4 sing 16 n y 
C10 O11 5K4 sing 17 n n 
C21 C14 5K4 sing 18 n n 
C21 C18 5K4 sing 19 n n 
C14 C15 5K4 sing 20 n n 
C19 C18 5K4 sing 21 n n 
C19 C20 5K4 sing 22 n n 
C18 C17 5K4 sing 23 n n 
C15 C16 5K4 sing 24 n n 
C17 C16 5K4 sing 25 n n 
O01 H1 5K4 sing 26 n n 
C03 H2 5K4 sing 27 n n 
C04 H3 5K4 sing 28 n n 
C08 H5 5K4 sing 29 n n 
C09 H6 5K4 sing 30 n n 
O11 H7 5K4 sing 31 n n 
C12 H8 5K4 sing 32 n n 
C13 H9 5K4 sing 33 n n 
C15 H11 5K4 sing 34 n n 
C15 H12 5K4 sing 35 n n 
C16 H13 5K4 sing 36 n n 
C16 H14 5K4 sing 37 n n 
C17 H15 5K4 sing 38 n n 
C17 H16 5K4 sing 39 n n 
C18 H17 5K4 sing 40 n n 
C19 H18 5K4 sing 41 n n 
C19 H19 5K4 sing 42 n n 
C20 H20 5K4 sing 43 n n 
C20 H21 5K4 sing 44 n n 
C20 H22 5K4 sing 45 n n 
C21 H23 5K4 sing 46 n n 
C21 H24 5K4 sing 47 n n 
C22 H25 5K4 sing 48 n n 
C23 H26 5K4 sing 49 n n 
#
_atom_sites.entry_id                     5DY8 
_atom_sites.fract_transf_matrix[1][1]    0.018389 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006795 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018308 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 5K4 A 1 900 900 5K4 UNK . 
F 3 5K4 B 1 901 901 5K4 UNK . 
G 4 HOH A 1 1001 61 HOH HOH . 
G 4 HOH A 2 1002 97 HOH HOH . 
G 4 HOH A 3 1003 128 HOH HOH . 
G 4 HOH A 4 1004 140 HOH HOH . 
G 4 HOH A 5 1005 35 HOH HOH . 
G 4 HOH A 6 1006 38 HOH HOH . 
G 4 HOH A 7 1007 130 HOH HOH . 
G 4 HOH A 8 1008 73 HOH HOH . 
G 4 HOH A 9 1009 125 HOH HOH . 
G 4 HOH A 10 1010 21 HOH HOH . 
G 4 HOH A 11 1011 24 HOH HOH . 
G 4 HOH A 12 1012 29 HOH HOH . 
G 4 HOH A 13 1013 36 HOH HOH . 
G 4 HOH A 14 1014 32 HOH HOH . 
G 4 HOH A 15 1015 55 HOH HOH . 
G 4 HOH A 16 1016 31 HOH HOH . 
G 4 HOH A 17 1017 16 HOH HOH . 
G 4 HOH A 18 1018 17 HOH HOH . 
G 4 HOH A 19 1019 170 HOH HOH . 
G 4 HOH A 20 1020 18 HOH HOH . 
G 4 HOH A 21 1021 20 HOH HOH . 
G 4 HOH A 22 1022 42 HOH HOH . 
G 4 HOH A 23 1023 67 HOH HOH . 
G 4 HOH A 24 1024 3 HOH HOH . 
G 4 HOH A 25 1025 110 HOH HOH . 
G 4 HOH A 26 1026 87 HOH HOH . 
G 4 HOH A 27 1027 183 HOH HOH . 
G 4 HOH A 28 1028 11 HOH HOH . 
G 4 HOH A 29 1029 10 HOH HOH . 
G 4 HOH A 30 1030 72 HOH HOH . 
G 4 HOH A 31 1031 175 HOH HOH . 
G 4 HOH A 32 1032 101 HOH HOH . 
G 4 HOH A 33 1033 57 HOH HOH . 
G 4 HOH A 34 1034 13 HOH HOH . 
G 4 HOH A 35 1035 129 HOH HOH . 
G 4 HOH A 36 1036 149 HOH HOH . 
G 4 HOH A 37 1037 189 HOH HOH . 
G 4 HOH A 38 1038 147 HOH HOH . 
G 4 HOH A 39 1039 115 HOH HOH . 
G 4 HOH A 40 1040 50 HOH HOH . 
G 4 HOH A 41 1041 62 HOH HOH . 
G 4 HOH A 42 1042 54 HOH HOH . 
G 4 HOH A 43 1043 136 HOH HOH . 
G 4 HOH A 44 1044 77 HOH HOH . 
G 4 HOH A 45 1045 88 HOH HOH . 
G 4 HOH A 46 1046 52 HOH HOH . 
G 4 HOH A 47 1047 195 HOH HOH . 
G 4 HOH A 48 1048 46 HOH HOH . 
G 4 HOH A 49 1049 40 HOH HOH . 
G 4 HOH A 50 1050 145 HOH HOH . 
G 4 HOH A 51 1051 84 HOH HOH . 
G 4 HOH A 52 1052 94 HOH HOH . 
G 4 HOH A 53 1053 161 HOH HOH . 
G 4 HOH A 54 1054 92 HOH HOH . 
G 4 HOH A 55 1055 4 HOH HOH . 
G 4 HOH A 56 1056 12 HOH HOH . 
G 4 HOH A 57 1057 48 HOH HOH . 
G 4 HOH A 58 1058 6 HOH HOH . 
G 4 HOH A 59 1059 134 HOH HOH . 
G 4 HOH A 60 1060 53 HOH HOH . 
G 4 HOH A 61 1061 51 HOH HOH . 
G 4 HOH A 62 1062 172 HOH HOH . 
G 4 HOH A 63 1063 177 HOH HOH . 
G 4 HOH A 64 1064 121 HOH HOH . 
G 4 HOH A 65 1065 181 HOH HOH . 
G 4 HOH A 66 1066 135 HOH HOH . 
G 4 HOH A 67 1067 49 HOH HOH . 
G 4 HOH A 68 1068 96 HOH HOH . 
G 4 HOH A 69 1069 169 HOH HOH . 
G 4 HOH A 70 1070 76 HOH HOH . 
G 4 HOH A 71 1071 187 HOH HOH . 
G 4 HOH A 72 1072 58 HOH HOH . 
G 4 HOH A 73 1073 138 HOH HOH . 
G 4 HOH A 74 1074 90 HOH HOH . 
G 4 HOH A 75 1075 44 HOH HOH . 
G 4 HOH A 76 1076 160 HOH HOH . 
G 4 HOH A 77 1077 64 HOH HOH . 
G 4 HOH A 78 1078 118 HOH HOH . 
G 4 HOH A 79 1079 167 HOH HOH . 
G 4 HOH A 80 1080 184 HOH HOH . 
G 4 HOH A 81 1081 95 HOH HOH . 
G 4 HOH A 82 1082 131 HOH HOH . 
G 4 HOH A 83 1083 119 HOH HOH . 
G 4 HOH A 84 1084 75 HOH HOH . 
G 4 HOH A 85 1085 182 HOH HOH . 
G 4 HOH A 86 1086 82 HOH HOH . 
G 4 HOH A 87 1087 137 HOH HOH . 
G 4 HOH A 88 1088 123 HOH HOH . 
G 4 HOH A 89 1089 99 HOH HOH . 
G 4 HOH A 90 1090 178 HOH HOH . 
G 4 HOH A 91 1091 89 HOH HOH . 
G 4 HOH A 92 1092 179 HOH HOH . 
G 4 HOH A 93 1093 68 HOH HOH . 
G 4 HOH A 94 1094 171 HOH HOH . 
G 4 HOH A 95 1095 192 HOH HOH . 
G 4 HOH A 96 1096 91 HOH HOH . 
G 4 HOH A 97 1097 116 HOH HOH . 
G 4 HOH A 98 1098 124 HOH HOH . 
G 4 HOH A 99 1099 154 HOH HOH . 
G 4 HOH A 100 1100 120 HOH HOH . 
G 4 HOH A 101 1101 117 HOH HOH . 
G 4 HOH A 102 1102 180 HOH HOH . 
G 4 HOH A 103 1103 102 HOH HOH . 
G 4 HOH A 104 1104 165 HOH HOH . 
G 4 HOH A 105 1105 37 HOH HOH . 
G 4 HOH A 106 1106 194 HOH HOH . 
H 4 HOH B 1 1001 163 HOH HOH . 
H 4 HOH B 2 1002 127 HOH HOH . 
H 4 HOH B 3 1003 33 HOH HOH . 
H 4 HOH B 4 1004 79 HOH HOH . 
H 4 HOH B 5 1005 39 HOH HOH . 
H 4 HOH B 6 1006 185 HOH HOH . 
H 4 HOH B 7 1007 27 HOH HOH . 
H 4 HOH B 8 1008 190 HOH HOH . 
H 4 HOH B 9 1009 112 HOH HOH . 
H 4 HOH B 10 1010 164 HOH HOH . 
H 4 HOH B 11 1011 19 HOH HOH . 
H 4 HOH B 12 1012 103 HOH HOH . 
H 4 HOH B 13 1013 132 HOH HOH . 
H 4 HOH B 14 1014 74 HOH HOH . 
H 4 HOH B 15 1015 139 HOH HOH . 
H 4 HOH B 16 1016 34 HOH HOH . 
H 4 HOH B 17 1017 78 HOH HOH . 
H 4 HOH B 18 1018 107 HOH HOH . 
H 4 HOH B 19 1019 26 HOH HOH . 
H 4 HOH B 20 1020 59 HOH HOH . 
H 4 HOH B 21 1021 122 HOH HOH . 
H 4 HOH B 22 1022 114 HOH HOH . 
H 4 HOH B 23 1023 30 HOH HOH . 
H 4 HOH B 24 1024 22 HOH HOH . 
H 4 HOH B 25 1025 86 HOH HOH . 
H 4 HOH B 26 1026 28 HOH HOH . 
H 4 HOH B 27 1027 186 HOH HOH . 
H 4 HOH B 28 1028 105 HOH HOH . 
H 4 HOH B 29 1029 157 HOH HOH . 
H 4 HOH B 30 1030 25 HOH HOH . 
H 4 HOH B 31 1031 98 HOH HOH . 
H 4 HOH B 32 1032 176 HOH HOH . 
H 4 HOH B 33 1033 5 HOH HOH . 
H 4 HOH B 34 1034 2 HOH HOH . 
H 4 HOH B 35 1035 41 HOH HOH . 
H 4 HOH B 36 1036 23 HOH HOH . 
H 4 HOH B 37 1037 193 HOH HOH . 
H 4 HOH B 38 1038 15 HOH HOH . 
H 4 HOH B 39 1039 63 HOH HOH . 
H 4 HOH B 40 1040 43 HOH HOH . 
H 4 HOH B 41 1041 173 HOH HOH . 
H 4 HOH B 42 1042 141 HOH HOH . 
H 4 HOH B 43 1043 108 HOH HOH . 
H 4 HOH B 44 1044 9 HOH HOH . 
H 4 HOH B 45 1045 83 HOH HOH . 
H 4 HOH B 46 1046 60 HOH HOH . 
H 4 HOH B 47 1047 71 HOH HOH . 
H 4 HOH B 48 1048 143 HOH HOH . 
H 4 HOH B 49 1049 144 HOH HOH . 
H 4 HOH B 50 1050 80 HOH HOH . 
H 4 HOH B 51 1051 7 HOH HOH . 
H 4 HOH B 52 1052 47 HOH HOH . 
H 4 HOH B 53 1053 150 HOH HOH . 
H 4 HOH B 54 1054 151 HOH HOH . 
H 4 HOH B 55 1055 81 HOH HOH . 
H 4 HOH B 56 1056 45 HOH HOH . 
H 4 HOH B 57 1057 93 HOH HOH . 
H 4 HOH B 58 1058 191 HOH HOH . 
H 4 HOH B 59 1059 113 HOH HOH . 
H 4 HOH B 60 1060 156 HOH HOH . 
H 4 HOH B 61 1061 66 HOH HOH . 
H 4 HOH B 62 1062 106 HOH HOH . 
H 4 HOH B 63 1063 100 HOH HOH . 
H 4 HOH B 64 1064 104 HOH HOH . 
H 4 HOH B 65 1065 168 HOH HOH . 
H 4 HOH B 66 1066 69 HOH HOH . 
H 4 HOH B 67 1067 70 HOH HOH . 
H 4 HOH B 68 1068 65 HOH HOH . 
H 4 HOH B 69 1069 1 HOH HOH . 
H 4 HOH B 70 1070 196 HOH HOH . 
H 4 HOH B 71 1071 155 HOH HOH . 
H 4 HOH B 72 1072 166 HOH HOH . 
H 4 HOH B 73 1073 174 HOH HOH . 
H 4 HOH B 74 1074 126 HOH HOH . 
H 4 HOH B 75 1075 146 HOH HOH . 
H 4 HOH B 76 1076 56 HOH HOH . 
H 4 HOH B 77 1077 148 HOH HOH . 
H 4 HOH B 78 1078 159 HOH HOH . 
H 4 HOH B 79 1079 158 HOH HOH . 
H 4 HOH B 80 1080 188 HOH HOH . 
H 4 HOH B 81 1081 85 HOH HOH . 
H 4 HOH B 82 1082 162 HOH HOH . 
H 4 HOH B 83 1083 153 HOH HOH . 
H 4 HOH B 84 1084 14 HOH HOH . 
H 4 HOH B 85 1085 109 HOH HOH . 
H 4 HOH B 86 1086 133 HOH HOH . 
H 4 HOH B 87 1087 142 HOH HOH . 
H 4 HOH B 88 1088 197 HOH HOH . 
H 4 HOH B 89 1089 8 HOH HOH . 
H 4 HOH B 90 1090 152 HOH HOH . 
I 4 HOH C 1 701 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 5K4 . . . F 3 6.384 22.171 34.794 1 30.69 ? O01 5K4 901 B 1 
HETATM 2 C C02 5K4 . . . F 3 7.715 21.917 34.415 1 28.79 ? C02 5K4 901 B 1 
HETATM 3 C C03 5K4 . . . F 3 8.112 22.087 33.098 1 30.04 ? C03 5K4 901 B 1 
HETATM 4 C C04 5K4 . . . F 3 9.423 21.83 32.727 1 29.29 ? C04 5K4 901 B 1 
HETATM 5 C C05 5K4 . . . F 3 10.346 21.41 33.675 1 34.18 ? C05 5K4 901 B 1 
HETATM 6 C C06 5K4 . . . F 3 11.784 21.113 33.299 1 36.23 ? C06 5K4 901 B 1 
HETATM 7 C C07 5K4 . . . F 3 12.428 19.87 33.867 1 33.88 ? C07 5K4 901 B 1 
HETATM 8 C C08 5K4 . . . F 3 11.909 18.622 33.557 1 32.79 ? C08 5K4 901 B 1 
HETATM 9 C C09 5K4 . . . F 3 12.496 17.479 34.079 1 32.91 ? C09 5K4 901 B 1 
HETATM 10 C C10 5K4 . . . F 3 13.604 17.584 34.907 1 31.03 ? C10 5K4 901 B 1 
HETATM 11 O O11 5K4 . . . F 3 14.202 16.424 35.432 1 33.02 ? O11 5K4 901 B 1 
HETATM 12 C C12 5K4 . . . F 3 14.124 18.832 35.214 1 34.45 ? C12 5K4 901 B 1 
HETATM 13 C C13 5K4 . . . F 3 13.535 19.975 34.695 1 33.4 ? C13 5K4 901 B 1 
HETATM 14 C C14 5K4 . . . F 3 12.527 21.962 32.553 1 45.25 ? C14 5K4 901 B 1 
HETATM 15 C C15 5K4 . . . F 3 12.342 23.461 32.577 1 49.76 ? C15 5K4 901 B 1 
HETATM 16 C C16 5K4 . . . F 3 12.19 23.964 31.154 1 48.62 ? C16 5K4 901 B 1 
HETATM 17 C C17 5K4 . . . F 3 13.401 23.643 30.293 1 45.99 ? C17 5K4 901 B 1 
HETATM 18 C C18 5K4 . . . F 3 14.318 22.593 30.908 1 45 ? C18 5K4 901 B 1 
HETATM 19 C C19 5K4 . . . F 3 15.224 22.017 29.823 1 45.92 ? C19 5K4 901 B 1 
HETATM 20 C C20 5K4 . . . F 3 16.03 20.837 30.319 1 43.71 ? C20 5K4 901 B 1 
HETATM 21 C C21 5K4 . . . F 3 13.554 21.458 31.57 1 45.76 ? C21 5K4 901 B 1 
HETATM 22 C C22 5K4 . . . F 3 9.944 21.233 34.991 1 31.55 ? C22 5K4 901 B 1 
HETATM 23 C C23 5K4 . . . F 3 8.631 21.487 35.361 1 31.01 ? C23 5K4 901 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#