data_5DYA # _model_server_result.job_id gkGByKI7RqY9dGevOaa5Tw _model_server_result.datetime_utc '2024-11-18 06:49:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5DYA # _exptl.entry_id 5DYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DYA _cell.length_a 61.163 _cell.length_b 61.163 _cell.length_c 62.153 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 266 n n N O2 NO3 sing 267 n n N O3 NO3 sing 268 n n # _atom_sites.entry_id 5DYA _atom_sites.fract_transf_matrix[1][1] 0.01635 _atom_sites.fract_transf_matrix[1][2] 0.00944 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 801 1 NO3 NO3 . C 3 5GV A 1 802 2 5GV DRG . D 4 HOH A 1 901 57 HOH HOH . D 4 HOH A 2 902 16 HOH HOH . D 4 HOH A 3 903 6 HOH HOH . D 4 HOH A 4 904 67 HOH HOH . D 4 HOH A 5 905 143 HOH HOH . D 4 HOH A 6 906 45 HOH HOH . D 4 HOH A 7 907 95 HOH HOH . D 4 HOH A 8 908 27 HOH HOH . D 4 HOH A 9 909 71 HOH HOH . D 4 HOH A 10 910 25 HOH HOH . D 4 HOH A 11 911 44 HOH HOH . D 4 HOH A 12 912 92 HOH HOH . D 4 HOH A 13 913 65 HOH HOH . D 4 HOH A 14 914 108 HOH HOH . D 4 HOH A 15 915 75 HOH HOH . D 4 HOH A 16 916 5 HOH HOH . D 4 HOH A 17 917 79 HOH HOH . D 4 HOH A 18 918 3 HOH HOH . D 4 HOH A 19 919 127 HOH HOH . D 4 HOH A 20 920 33 HOH HOH . D 4 HOH A 21 921 23 HOH HOH . D 4 HOH A 22 922 83 HOH HOH . D 4 HOH A 23 923 49 HOH HOH . D 4 HOH A 24 924 97 HOH HOH . D 4 HOH A 25 925 15 HOH HOH . D 4 HOH A 26 926 145 HOH HOH . D 4 HOH A 27 927 10 HOH HOH . D 4 HOH A 28 928 100 HOH HOH . D 4 HOH A 29 929 34 HOH HOH . D 4 HOH A 30 930 110 HOH HOH . D 4 HOH A 31 931 9 HOH HOH . D 4 HOH A 32 932 149 HOH HOH . D 4 HOH A 33 933 86 HOH HOH . D 4 HOH A 34 934 59 HOH HOH . D 4 HOH A 35 935 8 HOH HOH . D 4 HOH A 36 936 50 HOH HOH . D 4 HOH A 37 937 107 HOH HOH . D 4 HOH A 38 938 21 HOH HOH . D 4 HOH A 39 939 36 HOH HOH . D 4 HOH A 40 940 24 HOH HOH . D 4 HOH A 41 941 11 HOH HOH . D 4 HOH A 42 942 19 HOH HOH . D 4 HOH A 43 943 20 HOH HOH . D 4 HOH A 44 944 28 HOH HOH . D 4 HOH A 45 945 2 HOH HOH . D 4 HOH A 46 946 29 HOH HOH . D 4 HOH A 47 947 43 HOH HOH . D 4 HOH A 48 948 60 HOH HOH . D 4 HOH A 49 949 40 HOH HOH . D 4 HOH A 50 950 140 HOH HOH . D 4 HOH A 51 951 31 HOH HOH . D 4 HOH A 52 952 18 HOH HOH . D 4 HOH A 53 953 51 HOH HOH . D 4 HOH A 54 954 80 HOH HOH . D 4 HOH A 55 955 141 HOH HOH . D 4 HOH A 56 956 12 HOH HOH . D 4 HOH A 57 957 22 HOH HOH . D 4 HOH A 58 958 41 HOH HOH . D 4 HOH A 59 959 69 HOH HOH . D 4 HOH A 60 960 131 HOH HOH . D 4 HOH A 61 961 7 HOH HOH . D 4 HOH A 62 962 52 HOH HOH . D 4 HOH A 63 963 61 HOH HOH . D 4 HOH A 64 964 1 HOH HOH . D 4 HOH A 65 965 32 HOH HOH . D 4 HOH A 66 966 144 HOH HOH . D 4 HOH A 67 967 66 HOH HOH . D 4 HOH A 68 968 62 HOH HOH . D 4 HOH A 69 969 74 HOH HOH . D 4 HOH A 70 970 38 HOH HOH . D 4 HOH A 71 971 77 HOH HOH . D 4 HOH A 72 972 42 HOH HOH . D 4 HOH A 73 973 4 HOH HOH . D 4 HOH A 74 974 136 HOH HOH . D 4 HOH A 75 975 132 HOH HOH . D 4 HOH A 76 976 48 HOH HOH . D 4 HOH A 77 977 47 HOH HOH . D 4 HOH A 78 978 17 HOH HOH . D 4 HOH A 79 979 39 HOH HOH . D 4 HOH A 80 980 90 HOH HOH . D 4 HOH A 81 981 14 HOH HOH . D 4 HOH A 82 982 81 HOH HOH . D 4 HOH A 83 983 109 HOH HOH . D 4 HOH A 84 984 142 HOH HOH . D 4 HOH A 85 985 82 HOH HOH . D 4 HOH A 86 986 111 HOH HOH . D 4 HOH A 87 987 76 HOH HOH . D 4 HOH A 88 988 72 HOH HOH . D 4 HOH A 89 989 70 HOH HOH . D 4 HOH A 90 990 78 HOH HOH . D 4 HOH A 91 991 126 HOH HOH . D 4 HOH A 92 992 46 HOH HOH . D 4 HOH A 93 993 30 HOH HOH . D 4 HOH A 94 994 88 HOH HOH . D 4 HOH A 95 995 94 HOH HOH . D 4 HOH A 96 996 63 HOH HOH . D 4 HOH A 97 997 37 HOH HOH . D 4 HOH A 98 998 96 HOH HOH . D 4 HOH A 99 999 54 HOH HOH . D 4 HOH A 100 1000 68 HOH HOH . D 4 HOH A 101 1001 87 HOH HOH . D 4 HOH A 102 1002 53 HOH HOH . D 4 HOH A 103 1003 146 HOH HOH . D 4 HOH A 104 1004 104 HOH HOH . D 4 HOH A 105 1005 85 HOH HOH . D 4 HOH A 106 1006 58 HOH HOH . D 4 HOH A 107 1007 125 HOH HOH . D 4 HOH A 108 1008 98 HOH HOH . D 4 HOH A 109 1009 26 HOH HOH . D 4 HOH A 110 1010 89 HOH HOH . D 4 HOH A 111 1011 56 HOH HOH . D 4 HOH A 112 1012 35 HOH HOH . D 4 HOH A 113 1013 84 HOH HOH . D 4 HOH A 114 1014 55 HOH HOH . D 4 HOH A 115 1015 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . B 2 17.125 3.146 -22.501 1 40.82 ? N NO3 801 A 1 HETATM 2 O O1 NO3 . . . B 2 17.62 2.331 -21.509 1 32.18 ? O1 NO3 801 A 1 HETATM 3 O O2 NO3 . . . B 2 15.651 3.258 -22.675 1 33.07 ? O2 NO3 801 A 1 HETATM 4 O O3 NO3 . . . B 2 18.104 3.92 -23.447 1 35.82 ? O3 NO3 801 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 58 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #