data_5DYQ # _model_server_result.job_id d2sD_d_BHCA6gV1sz4PYew _model_server_result.datetime_utc '2025-03-21 17:15:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5DYQ # _exptl.entry_id 5DYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DYQ _cell.length_a 67.351 _cell.length_b 68.27 _cell.length_c 139.31 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,G,K 1 1 A,H 1 2 B,C,E,F,I,J 2 1 A,H 3 1 D,G,K 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 67.351 -34.135 69.655 3 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 67.351 34.135 69.655 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 91 A LEU 72 1_555 A N MSE 92 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 92 A MSE 73 1_555 A N THR 93 A THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C ARG 144 A ARG 125 1_555 A N MSE 145 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C MSE 145 A MSE 126 1_555 A N THR 146 A THR 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C LEU 157 A LEU 138 1_555 A N MSE 158 A MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 158 A MSE 139 1_555 A N GLY 159 A GLY 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale7 B C LEU 91 B LEU 72 1_555 B N MSE 92 B MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale8 B C MSE 92 B MSE 73 1_555 B N THR 93 B THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale9 B C ARG 144 B ARG 125 1_555 B N MSE 145 B MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale10 B C MSE 145 B MSE 126 1_555 B N THR 146 B THR 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 B C LEU 157 B LEU 138 1_555 B N MSE 158 B MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale12 B C MSE 158 B MSE 139 1_555 B N GLY 159 B GLY 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale13 C C LEU 91 C LEU 72 1_555 C N MSE 92 C MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale14 C C MSE 92 C MSE 73 1_555 C N THR 93 C THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 C C ARG 144 C ARG 125 1_555 C N MSE 145 C MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale16 C C MSE 145 C MSE 126 1_555 C N THR 146 C THR 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 C C LEU 157 C LEU 138 1_555 C N MSE 158 C MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale18 C C MSE 158 C MSE 139 1_555 C N GLY 159 C GLY 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 D C LEU 91 D LEU 72 1_555 D N MSE 92 D MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.284 ? covale ? covale20 D C MSE 92 D MSE 73 1_555 D N THR 93 D THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale21 D C ARG 144 D ARG 125 1_555 D N MSE 145 D MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale22 D C MSE 145 D MSE 126 1_555 D N THR 146 D THR 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale23 D C LEU 157 D LEU 138 1_555 D N MSE 158 D MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 D C MSE 158 D MSE 139 1_555 D N GLY 159 D GLY 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 5DYQ _atom_sites.fract_transf_matrix[1][1] 0.014848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EPE B 1 201 902 EPE EPE . F 2 EPE C 1 201 903 EPE EPE . G 2 EPE D 1 901 901 EPE EPE . H 3 HOH A 1 201 47 HOH HOH . H 3 HOH A 2 202 73 HOH HOH . H 3 HOH A 3 203 24 HOH HOH . H 3 HOH A 4 204 17 HOH HOH . H 3 HOH A 5 205 68 HOH HOH . H 3 HOH A 6 206 81 HOH HOH . H 3 HOH A 7 207 97 HOH HOH . H 3 HOH A 8 208 36 HOH HOH . H 3 HOH A 9 209 44 HOH HOH . H 3 HOH A 10 210 30 HOH HOH . H 3 HOH A 11 211 25 HOH HOH . H 3 HOH A 12 212 10 HOH HOH . H 3 HOH A 13 213 93 HOH HOH . H 3 HOH A 14 214 45 HOH HOH . H 3 HOH A 15 215 11 HOH HOH . I 3 HOH B 1 301 87 HOH HOH . I 3 HOH B 2 302 49 HOH HOH . I 3 HOH B 3 303 23 HOH HOH . I 3 HOH B 4 304 83 HOH HOH . I 3 HOH B 5 305 80 HOH HOH . I 3 HOH B 6 306 84 HOH HOH . I 3 HOH B 7 307 46 HOH HOH . I 3 HOH B 8 308 12 HOH HOH . I 3 HOH B 9 309 70 HOH HOH . I 3 HOH B 10 310 48 HOH HOH . I 3 HOH B 11 311 34 HOH HOH . I 3 HOH B 12 312 74 HOH HOH . I 3 HOH B 13 313 91 HOH HOH . I 3 HOH B 14 314 9 HOH HOH . I 3 HOH B 15 315 54 HOH HOH . I 3 HOH B 16 316 40 HOH HOH . I 3 HOH B 17 317 75 HOH HOH . I 3 HOH B 18 318 43 HOH HOH . I 3 HOH B 19 319 1 HOH HOH . I 3 HOH B 20 320 41 HOH HOH . J 3 HOH C 1 301 50 HOH HOH . J 3 HOH C 2 302 15 HOH HOH . J 3 HOH C 3 303 18 HOH HOH . J 3 HOH C 4 304 19 HOH HOH . J 3 HOH C 5 305 2 HOH HOH . J 3 HOH C 6 306 8 HOH HOH . J 3 HOH C 7 307 35 HOH HOH . J 3 HOH C 8 308 64 HOH HOH . J 3 HOH C 9 309 37 HOH HOH . J 3 HOH C 10 310 32 HOH HOH . J 3 HOH C 11 311 72 HOH HOH . J 3 HOH C 12 312 28 HOH HOH . J 3 HOH C 13 313 62 HOH HOH . J 3 HOH C 14 314 96 HOH HOH . J 3 HOH C 15 315 88 HOH HOH . J 3 HOH C 16 316 13 HOH HOH . J 3 HOH C 17 317 42 HOH HOH . J 3 HOH C 18 318 52 HOH HOH . J 3 HOH C 19 319 55 HOH HOH . J 3 HOH C 20 320 26 HOH HOH . J 3 HOH C 21 321 5 HOH HOH . J 3 HOH C 22 322 33 HOH HOH . J 3 HOH C 23 323 20 HOH HOH . J 3 HOH C 24 324 16 HOH HOH . J 3 HOH C 25 325 82 HOH HOH . J 3 HOH C 26 326 56 HOH HOH . J 3 HOH C 27 327 78 HOH HOH . J 3 HOH C 28 328 53 HOH HOH . J 3 HOH C 29 329 67 HOH HOH . J 3 HOH C 30 330 27 HOH HOH . K 3 HOH D 1 1001 85 HOH HOH . K 3 HOH D 2 1002 29 HOH HOH . K 3 HOH D 3 1003 58 HOH HOH . K 3 HOH D 4 1004 6 HOH HOH . K 3 HOH D 5 1005 65 HOH HOH . K 3 HOH D 6 1006 4 HOH HOH . K 3 HOH D 7 1007 86 HOH HOH . K 3 HOH D 8 1008 99 HOH HOH . K 3 HOH D 9 1009 77 HOH HOH . K 3 HOH D 10 1010 57 HOH HOH . K 3 HOH D 11 1011 21 HOH HOH . K 3 HOH D 12 1012 94 HOH HOH . K 3 HOH D 13 1013 38 HOH HOH . K 3 HOH D 14 1014 66 HOH HOH . K 3 HOH D 15 1015 39 HOH HOH . K 3 HOH D 16 1016 90 HOH HOH . K 3 HOH D 17 1017 76 HOH HOH . K 3 HOH D 18 1018 3 HOH HOH . K 3 HOH D 19 1019 69 HOH HOH . K 3 HOH D 20 1020 22 HOH HOH . K 3 HOH D 21 1021 92 HOH HOH . K 3 HOH D 22 1022 59 HOH HOH . K 3 HOH D 23 1023 63 HOH HOH . K 3 HOH D 24 1024 98 HOH HOH . K 3 HOH D 25 1025 51 HOH HOH . K 3 HOH D 26 1026 60 HOH HOH . K 3 HOH D 27 1027 61 HOH HOH . K 3 HOH D 28 1028 14 HOH HOH . K 3 HOH D 29 1029 95 HOH HOH . K 3 HOH D 30 1030 31 HOH HOH . K 3 HOH D 31 1031 71 HOH HOH . K 3 HOH D 32 1032 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 2 52.423 47.693 61.01 0.5 26.85 ? N1 EPE 201 C 1 HETATM 2 C C2 EPE . . . F 2 51.981 47.543 62.402 0.5 24.85 ? C2 EPE 201 C 1 HETATM 3 C C3 EPE . . . F 2 50.46 47.453 62.445 0.5 25.76 ? C3 EPE 201 C 1 HETATM 4 N N4 EPE . . . F 2 50.016 46.292 61.662 0.5 26.43 ? N4 EPE 201 C 1 HETATM 5 C C5 EPE . . . F 2 50.459 46.441 60.27 0.5 22.98 ? C5 EPE 201 C 1 HETATM 6 C C6 EPE . . . F 2 51.98 46.531 60.227 0.5 23.7 ? C6 EPE 201 C 1 HETATM 7 C C7 EPE . . . F 2 48.55 46.207 61.702 0.5 25.38 ? C7 EPE 201 C 1 HETATM 8 C C8 EPE . . . F 2 47.952 47.574 61.393 0.5 21.26 ? C8 EPE 201 C 1 HETATM 9 O O8 EPE . . . F 2 47.725 48.283 62.616 0.5 22.01 ? O8 EPE 201 C 1 HETATM 10 C C9 EPE . . . F 2 53.889 47.781 60.968 0.5 19.36 ? C9 EPE 201 C 1 HETATM 11 C C10 EPE . . . F 2 54.464 47.309 62.298 0.5 20.39 ? C10 EPE 201 C 1 HETATM 12 S S EPE . . . F 2 54.952 45.726 62.162 0.5 25.76 ? S EPE 201 C 1 HETATM 13 O O1S EPE . . . F 2 56.559 45.675 61.863 0.5 21.91 ? O1S EPE 201 C 1 HETATM 14 O O2S EPE . . . F 2 54.244 45.099 61.081 0.5 20.65 ? O2S EPE 201 C 1 HETATM 15 O O3S EPE . . . F 2 54.67 45.031 63.386 0.5 24.59 ? O3S EPE 201 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #