data_5DYU # _model_server_result.job_id pY2t1RcqcjtTJXvQFSDF0A _model_server_result.datetime_utc '2024-11-19 12:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5DYU # _exptl.entry_id 5DYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 98.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-imidazol-5-ylmethanol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DYU _cell.length_a 80.792 _cell.length_b 96.147 _cell.length_c 57.768 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C4 H6 N2 O' _chem_comp.formula_weight 98.103 _chem_comp.id MZ0 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-imidazol-5-ylmethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4(5)-(hydroxymethyl)imidazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MZ0 sing 237 n y N1 C5 MZ0 sing 238 n y C2 N3 MZ0 doub 239 n y N3 C4 MZ0 sing 240 n y C4 C5 MZ0 doub 241 n y C5 C6 MZ0 sing 242 n n C6 O7 MZ0 sing 243 n n N1 HN1 MZ0 sing 244 n n C2 H2 MZ0 sing 245 n n C4 H4 MZ0 sing 246 n n C6 H6 MZ0 sing 247 n n C6 H6A MZ0 sing 248 n n O7 HO7 MZ0 sing 249 n n # _atom_sites.entry_id 5DYU _atom_sites.fract_transf_matrix[1][1] 0.012377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MZ0 A 1 2001 1 MZ0 F39 . C 2 MZ0 A 1 2002 2 MZ0 F39 . D 3 HOH A 1 2101 128 HOH HOH . D 3 HOH A 2 2102 50 HOH HOH . D 3 HOH A 3 2103 119 HOH HOH . D 3 HOH A 4 2104 3 HOH HOH . D 3 HOH A 5 2105 31 HOH HOH . D 3 HOH A 6 2106 35 HOH HOH . D 3 HOH A 7 2107 34 HOH HOH . D 3 HOH A 8 2108 121 HOH HOH . D 3 HOH A 9 2109 19 HOH HOH . D 3 HOH A 10 2110 24 HOH HOH . D 3 HOH A 11 2111 41 HOH HOH . D 3 HOH A 12 2112 4 HOH HOH . D 3 HOH A 13 2113 78 HOH HOH . D 3 HOH A 14 2114 7 HOH HOH . D 3 HOH A 15 2115 26 HOH HOH . D 3 HOH A 16 2116 2 HOH HOH . D 3 HOH A 17 2117 59 HOH HOH . D 3 HOH A 18 2118 135 HOH HOH . D 3 HOH A 19 2119 10 HOH HOH . D 3 HOH A 20 2120 96 HOH HOH . D 3 HOH A 21 2121 104 HOH HOH . D 3 HOH A 22 2122 15 HOH HOH . D 3 HOH A 23 2123 46 HOH HOH . D 3 HOH A 24 2124 52 HOH HOH . D 3 HOH A 25 2125 18 HOH HOH . D 3 HOH A 26 2126 70 HOH HOH . D 3 HOH A 27 2127 25 HOH HOH . D 3 HOH A 28 2128 122 HOH HOH . D 3 HOH A 29 2129 28 HOH HOH . D 3 HOH A 30 2130 38 HOH HOH . D 3 HOH A 31 2131 12 HOH HOH . D 3 HOH A 32 2132 17 HOH HOH . D 3 HOH A 33 2133 82 HOH HOH . D 3 HOH A 34 2134 40 HOH HOH . D 3 HOH A 35 2135 29 HOH HOH . D 3 HOH A 36 2136 47 HOH HOH . D 3 HOH A 37 2137 43 HOH HOH . D 3 HOH A 38 2138 9 HOH HOH . D 3 HOH A 39 2139 105 HOH HOH . D 3 HOH A 40 2140 16 HOH HOH . D 3 HOH A 41 2141 6 HOH HOH . D 3 HOH A 42 2142 11 HOH HOH . D 3 HOH A 43 2143 66 HOH HOH . D 3 HOH A 44 2144 36 HOH HOH . D 3 HOH A 45 2145 33 HOH HOH . D 3 HOH A 46 2146 90 HOH HOH . D 3 HOH A 47 2147 54 HOH HOH . D 3 HOH A 48 2148 56 HOH HOH . D 3 HOH A 49 2149 73 HOH HOH . D 3 HOH A 50 2150 20 HOH HOH . D 3 HOH A 51 2151 110 HOH HOH . D 3 HOH A 52 2152 72 HOH HOH . D 3 HOH A 53 2153 120 HOH HOH . D 3 HOH A 54 2154 91 HOH HOH . D 3 HOH A 55 2155 1 HOH HOH . D 3 HOH A 56 2156 23 HOH HOH . D 3 HOH A 57 2157 8 HOH HOH . D 3 HOH A 58 2158 84 HOH HOH . D 3 HOH A 59 2159 89 HOH HOH . D 3 HOH A 60 2160 94 HOH HOH . D 3 HOH A 61 2161 99 HOH HOH . D 3 HOH A 62 2162 14 HOH HOH . D 3 HOH A 63 2163 39 HOH HOH . D 3 HOH A 64 2164 32 HOH HOH . D 3 HOH A 65 2165 87 HOH HOH . D 3 HOH A 66 2166 61 HOH HOH . D 3 HOH A 67 2167 62 HOH HOH . D 3 HOH A 68 2168 63 HOH HOH . D 3 HOH A 69 2169 74 HOH HOH . D 3 HOH A 70 2170 42 HOH HOH . D 3 HOH A 71 2171 22 HOH HOH . D 3 HOH A 72 2172 13 HOH HOH . D 3 HOH A 73 2173 95 HOH HOH . D 3 HOH A 74 2174 67 HOH HOH . D 3 HOH A 75 2175 55 HOH HOH . D 3 HOH A 76 2176 48 HOH HOH . D 3 HOH A 77 2177 27 HOH HOH . D 3 HOH A 78 2178 125 HOH HOH . D 3 HOH A 79 2179 83 HOH HOH . D 3 HOH A 80 2180 30 HOH HOH . D 3 HOH A 81 2181 103 HOH HOH . D 3 HOH A 82 2182 97 HOH HOH . D 3 HOH A 83 2183 65 HOH HOH . D 3 HOH A 84 2184 44 HOH HOH . D 3 HOH A 85 2185 124 HOH HOH . D 3 HOH A 86 2186 138 HOH HOH . D 3 HOH A 87 2187 5 HOH HOH . D 3 HOH A 88 2188 64 HOH HOH . D 3 HOH A 89 2189 127 HOH HOH . D 3 HOH A 90 2190 51 HOH HOH . D 3 HOH A 91 2191 85 HOH HOH . D 3 HOH A 92 2192 107 HOH HOH . D 3 HOH A 93 2193 123 HOH HOH . D 3 HOH A 94 2194 68 HOH HOH . D 3 HOH A 95 2195 98 HOH HOH . D 3 HOH A 96 2196 69 HOH HOH . D 3 HOH A 97 2197 126 HOH HOH . D 3 HOH A 98 2198 81 HOH HOH . D 3 HOH A 99 2199 101 HOH HOH . D 3 HOH A 100 2200 86 HOH HOH . D 3 HOH A 101 2201 113 HOH HOH . D 3 HOH A 102 2202 21 HOH HOH . D 3 HOH A 103 2203 108 HOH HOH . D 3 HOH A 104 2204 116 HOH HOH . D 3 HOH A 105 2205 131 HOH HOH . D 3 HOH A 106 2206 92 HOH HOH . D 3 HOH A 107 2207 109 HOH HOH . D 3 HOH A 108 2208 79 HOH HOH . D 3 HOH A 109 2209 117 HOH HOH . D 3 HOH A 110 2210 75 HOH HOH . D 3 HOH A 111 2211 102 HOH HOH . D 3 HOH A 112 2212 77 HOH HOH . D 3 HOH A 113 2213 136 HOH HOH . D 3 HOH A 114 2214 57 HOH HOH . D 3 HOH A 115 2215 111 HOH HOH . D 3 HOH A 116 2216 49 HOH HOH . D 3 HOH A 117 2217 60 HOH HOH . D 3 HOH A 118 2218 137 HOH HOH . D 3 HOH A 119 2219 76 HOH HOH . D 3 HOH A 120 2220 115 HOH HOH . D 3 HOH A 121 2221 45 HOH HOH . D 3 HOH A 122 2222 58 HOH HOH . D 3 HOH A 123 2223 37 HOH HOH . D 3 HOH A 124 2224 133 HOH HOH . D 3 HOH A 125 2225 129 HOH HOH . D 3 HOH A 126 2226 100 HOH HOH . D 3 HOH A 127 2227 106 HOH HOH . D 3 HOH A 128 2228 112 HOH HOH . D 3 HOH A 129 2229 118 HOH HOH . D 3 HOH A 130 2230 71 HOH HOH . D 3 HOH A 131 2231 53 HOH HOH . D 3 HOH A 132 2232 93 HOH HOH . D 3 HOH A 133 2233 114 HOH HOH . D 3 HOH A 134 2234 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MZ0 . . . B 2 -24.383 -8.881 1.054 0.82 29.95 ? N1 MZ0 2001 A 1 HETATM 2 C C2 MZ0 . . . B 2 -24.628 -10.215 1.008 0.82 32.35 ? C2 MZ0 2001 A 1 HETATM 3 N N3 MZ0 . . . B 2 -25.927 -10.395 0.632 0.82 31.37 ? N3 MZ0 2001 A 1 HETATM 4 C C4 MZ0 . . . B 2 -26.464 -9.173 0.44 0.82 32.93 ? C4 MZ0 2001 A 1 HETATM 5 C C5 MZ0 . . . B 2 -25.493 -8.227 0.709 0.82 30.08 ? C5 MZ0 2001 A 1 HETATM 6 C C6 MZ0 . . . B 2 -25.651 -6.757 0.614 0.82 27.4 ? C6 MZ0 2001 A 1 HETATM 7 O O7 MZ0 . . . B 2 -25.976 -6.23 1.873 0.82 34.54 ? O7 MZ0 2001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #