data_5DYV
#
_model_server_result.job_id            PqZlC_Owcj3tqnTsokm9bA 
_model_server_result.datetime_utc      '2024-12-22 08:16:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    5DYV 
#
_exptl.entry_id    5DYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         112.87 
_cell.angle_beta          90.04 
_cell.angle_gamma         89.98 
_cell.entry_id            5DYV 
_cell.length_a            61.8 
_cell.length_b            73.59 
_cell.length_c            86.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H,I,P,Q,X 1 1 
B,F,J,N,R,V 2 1 
C,E,K,M,S,U 3 1 
D,G,L,O,T,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 70 n n 
N1 C6 EPE sing 71 n n 
N1 C9 EPE sing 72 n n 
C2 C3 EPE sing 73 n n 
C2 H21 EPE sing 74 n n 
C2 H22 EPE sing 75 n n 
C3 N4 EPE sing 76 n n 
C3 H31 EPE sing 77 n n 
C3 H32 EPE sing 78 n n 
N4 C5 EPE sing 79 n n 
N4 C7 EPE sing 80 n n 
C5 C6 EPE sing 81 n n 
C5 H51 EPE sing 82 n n 
C5 H52 EPE sing 83 n n 
C6 H61 EPE sing 84 n n 
C6 H62 EPE sing 85 n n 
C7 C8 EPE sing 86 n n 
C7 H71 EPE sing 87 n n 
C7 H72 EPE sing 88 n n 
C8 O8 EPE sing 89 n n 
C8 H81 EPE sing 90 n n 
C8 H82 EPE sing 91 n n 
O8 HO8 EPE sing 92 n n 
C9 C10 EPE sing 93 n n 
C9 H91 EPE sing 94 n n 
C9 H92 EPE sing 95 n n 
C10 S EPE sing 96 n n 
C10 H101 EPE sing 97 n n 
C10 H102 EPE sing 98 n n 
S O1S EPE doub 99 n n 
S O2S EPE doub 100 n n 
S O3S EPE sing 101 n n 
O3S HOS3 EPE sing 102 n n 
#
_atom_sites.entry_id                     5DYV 
_atom_sites.fract_transf_matrix[1][1]    0.016181 
_atom_sites.fract_transf_matrix[1][2]    -0.000006 
_atom_sites.fract_transf_matrix[1][3]    0.00001 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013589 
_atom_sites.fract_transf_matrix[2][3]    0.005732 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 EPE A 1 201 2 EPE EPE . 
J 2 EPE B 1 201 5 EPE EPE . 
K 2 EPE C 1 201 3 EPE EPE . 
L 2 EPE D 1 201 4 EPE EPE . 
M 2 EPE E 1 201 6 EPE EPE . 
N 2 EPE F 1 201 7 EPE EPE . 
O 2 EPE G 1 201 8 EPE EPE . 
P 2 EPE H 1 201 1 EPE EPE . 
Q 3 HOH A 1 301 44 HOH HOH . 
Q 3 HOH A 2 302 21 HOH HOH . 
Q 3 HOH A 3 303 49 HOH HOH . 
Q 3 HOH A 4 304 9 HOH HOH . 
Q 3 HOH A 5 305 36 HOH HOH . 
Q 3 HOH A 6 306 30 HOH HOH . 
Q 3 HOH A 7 307 4 HOH HOH . 
R 3 HOH B 1 301 15 HOH HOH . 
R 3 HOH B 2 302 13 HOH HOH . 
R 3 HOH B 3 303 52 HOH HOH . 
R 3 HOH B 4 304 25 HOH HOH . 
R 3 HOH B 5 305 39 HOH HOH . 
R 3 HOH B 6 306 18 HOH HOH . 
R 3 HOH B 7 307 51 HOH HOH . 
R 3 HOH B 8 308 24 HOH HOH . 
S 3 HOH C 1 301 31 HOH HOH . 
S 3 HOH C 2 302 23 HOH HOH . 
S 3 HOH C 3 303 26 HOH HOH . 
S 3 HOH C 4 304 29 HOH HOH . 
S 3 HOH C 5 305 48 HOH HOH . 
S 3 HOH C 6 306 27 HOH HOH . 
S 3 HOH C 7 307 7 HOH HOH . 
S 3 HOH C 8 308 6 HOH HOH . 
T 3 HOH D 1 301 47 HOH HOH . 
T 3 HOH D 2 302 12 HOH HOH . 
T 3 HOH D 3 303 45 HOH HOH . 
T 3 HOH D 4 304 35 HOH HOH . 
T 3 HOH D 5 305 19 HOH HOH . 
T 3 HOH D 6 306 33 HOH HOH . 
T 3 HOH D 7 307 57 HOH HOH . 
U 3 HOH E 1 301 41 HOH HOH . 
U 3 HOH E 2 302 53 HOH HOH . 
U 3 HOH E 3 303 28 HOH HOH . 
U 3 HOH E 4 304 17 HOH HOH . 
V 3 HOH F 1 301 11 HOH HOH . 
V 3 HOH F 2 302 46 HOH HOH . 
V 3 HOH F 3 303 34 HOH HOH . 
V 3 HOH F 4 304 22 HOH HOH . 
V 3 HOH F 5 305 37 HOH HOH . 
W 3 HOH G 1 301 5 HOH HOH . 
W 3 HOH G 2 302 32 HOH HOH . 
W 3 HOH G 3 303 54 HOH HOH . 
W 3 HOH G 4 304 38 HOH HOH . 
W 3 HOH G 5 305 20 HOH HOH . 
W 3 HOH G 6 306 42 HOH HOH . 
W 3 HOH G 7 307 50 HOH HOH . 
W 3 HOH G 8 308 8 HOH HOH . 
W 3 HOH G 9 309 58 HOH HOH . 
X 3 HOH H 1 301 10 HOH HOH . 
X 3 HOH H 2 302 16 HOH HOH . 
X 3 HOH H 3 303 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . L 2 -7.895 23.589 17.977 0.6 29.99 ? N1 EPE 201 D 1 
HETATM 2 C C2 EPE . . . L 2 -8.239 22.356 18.75 0.6 29.56 ? C2 EPE 201 D 1 
HETATM 3 C C3 EPE . . . L 2 -7.242 21.247 18.375 0.6 28.97 ? C3 EPE 201 D 1 
HETATM 4 N N4 EPE . . . L 2 -5.939 21.753 17.906 0.6 26.9 ? N4 EPE 201 D 1 
HETATM 5 C C5 EPE . . . L 2 -6.109 22.583 16.688 0.6 28.76 ? C5 EPE 201 D 1 
HETATM 6 C C6 EPE . . . L 2 -7.481 23.235 16.59 0.6 29.96 ? C6 EPE 201 D 1 
HETATM 7 C C7 EPE . . . L 2 -5.244 22.401 19.03 0.6 24.97 ? C7 EPE 201 D 1 
HETATM 8 C C8 EPE . . . L 2 -3.875 22.922 18.638 0.6 24.17 ? C8 EPE 201 D 1 
HETATM 9 O O8 EPE . . . L 2 -3.4 22.216 17.509 0.6 23.48 ? O8 EPE 201 D 1 
HETATM 10 C C9 EPE . . . L 2 -8.788 24.752 18.215 0.6 28.03 ? C9 EPE 201 D 1 
HETATM 11 C C10 EPE . . . L 2 -9.493 25.385 17.025 0.6 28.07 ? C10 EPE 201 D 1 
HETATM 12 S S EPE . . . L 2 -10.545 24.349 16.294 0.6 30.13 ? S EPE 201 D 1 
HETATM 13 O O1S EPE . . . L 2 -10.053 24.034 14.927 0.6 31.13 ? O1S EPE 201 D 1 
HETATM 14 O O2S EPE . . . L 2 -11.946 24.89 16.252 0.6 28.24 ? O2S EPE 201 D 1 
HETATM 15 O O3S EPE . . . L 2 -10.529 23.065 17.01 0.6 33.12 ? O3S EPE 201 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#