data_5DZ1 # _model_server_result.job_id K2ESziLb7-nPXvEeyzUhLg _model_server_result.datetime_utc '2024-11-29 04:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5DZ1 # _exptl.entry_id 5DZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.414 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-[(4-ethylcyclohexylidene)methanediyl]diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.56 _cell.angle_gamma 90 _cell.entry_id 5DZ1 _cell.length_a 54.316 _cell.length_b 80.973 _cell.length_c 58.223 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H24 O2' _chem_comp.formula_weight 308.414 _chem_comp.id 5JY _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-[(4-ethylcyclohexylidene)methanediyl]diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 5JY sing 1 n n C02 C03 5JY doub 2 n y C02 C23 5JY sing 3 n y C03 C04 5JY sing 4 n y C23 C22 5JY doub 5 n y C04 C05 5JY doub 6 n y C22 C05 5JY sing 7 n y C05 C06 5JY sing 8 n n C06 C07 5JY sing 9 n n C06 C14 5JY doub 10 n n C13 C07 5JY doub 11 n y C13 C12 5JY sing 12 n y C07 C08 5JY sing 13 n y C12 C10 5JY doub 14 n y C08 C09 5JY doub 15 n y C10 C09 5JY sing 16 n y C10 O11 5JY sing 17 n n C21 C14 5JY sing 18 n n C21 C20 5JY sing 19 n n C14 C15 5JY sing 20 n n C20 C17 5JY sing 21 n n C15 C16 5JY sing 22 n n C17 C16 5JY sing 23 n n C17 C18 5JY sing 24 n n C18 C19 5JY sing 25 n n O01 H1 5JY sing 26 n n C03 H2 5JY sing 27 n n C04 H3 5JY sing 28 n n C08 H5 5JY sing 29 n n C09 H6 5JY sing 30 n n O11 H7 5JY sing 31 n n C12 H8 5JY sing 32 n n C13 H9 5JY sing 33 n n C15 H11 5JY sing 34 n n C15 H12 5JY sing 35 n n C16 H13 5JY sing 36 n n C16 H14 5JY sing 37 n n C17 H15 5JY sing 38 n n C18 H16 5JY sing 39 n n C18 H17 5JY sing 40 n n C19 H18 5JY sing 41 n n C19 H19 5JY sing 42 n n C19 H20 5JY sing 43 n n C20 H21 5JY sing 44 n n C20 H22 5JY sing 45 n n C21 H23 5JY sing 46 n n C21 H24 5JY sing 47 n n C22 H25 5JY sing 48 n n C23 H26 5JY sing 49 n n # _atom_sites.entry_id 5DZ1 _atom_sites.fract_transf_matrix[1][1] 0.018411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006905 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5JY A 1 900 900 5JY UNK . F 3 5JY B 1 901 901 5JY UNK . G 4 HOH A 1 1001 12 HOH HOH . G 4 HOH A 2 1002 111 HOH HOH . G 4 HOH A 3 1003 119 HOH HOH . G 4 HOH A 4 1004 3 HOH HOH . G 4 HOH A 5 1005 109 HOH HOH . G 4 HOH A 6 1006 31 HOH HOH . G 4 HOH A 7 1007 91 HOH HOH . G 4 HOH A 8 1008 100 HOH HOH . G 4 HOH A 9 1009 123 HOH HOH . G 4 HOH A 10 1010 21 HOH HOH . G 4 HOH A 11 1011 118 HOH HOH . G 4 HOH A 12 1012 36 HOH HOH . G 4 HOH A 13 1013 90 HOH HOH . G 4 HOH A 14 1014 139 HOH HOH . G 4 HOH A 15 1015 64 HOH HOH . G 4 HOH A 16 1016 7 HOH HOH . G 4 HOH A 17 1017 103 HOH HOH . G 4 HOH A 18 1018 34 HOH HOH . G 4 HOH A 19 1019 75 HOH HOH . G 4 HOH A 20 1020 62 HOH HOH . G 4 HOH A 21 1021 69 HOH HOH . G 4 HOH A 22 1022 60 HOH HOH . G 4 HOH A 23 1023 41 HOH HOH . G 4 HOH A 24 1024 18 HOH HOH . G 4 HOH A 25 1025 13 HOH HOH . G 4 HOH A 26 1026 71 HOH HOH . G 4 HOH A 27 1027 25 HOH HOH . G 4 HOH A 28 1028 23 HOH HOH . G 4 HOH A 29 1029 20 HOH HOH . G 4 HOH A 30 1030 57 HOH HOH . G 4 HOH A 31 1031 22 HOH HOH . G 4 HOH A 32 1032 56 HOH HOH . G 4 HOH A 33 1033 15 HOH HOH . G 4 HOH A 34 1034 68 HOH HOH . G 4 HOH A 35 1035 51 HOH HOH . G 4 HOH A 36 1036 70 HOH HOH . G 4 HOH A 37 1037 26 HOH HOH . G 4 HOH A 38 1038 10 HOH HOH . G 4 HOH A 39 1039 33 HOH HOH . G 4 HOH A 40 1040 37 HOH HOH . G 4 HOH A 41 1041 72 HOH HOH . G 4 HOH A 42 1042 117 HOH HOH . G 4 HOH A 43 1043 77 HOH HOH . G 4 HOH A 44 1044 92 HOH HOH . G 4 HOH A 45 1045 16 HOH HOH . G 4 HOH A 46 1046 40 HOH HOH . G 4 HOH A 47 1047 94 HOH HOH . G 4 HOH A 48 1048 132 HOH HOH . G 4 HOH A 49 1049 53 HOH HOH . G 4 HOH A 50 1050 44 HOH HOH . G 4 HOH A 51 1051 17 HOH HOH . G 4 HOH A 52 1052 47 HOH HOH . G 4 HOH A 53 1053 121 HOH HOH . G 4 HOH A 54 1054 137 HOH HOH . G 4 HOH A 55 1055 83 HOH HOH . G 4 HOH A 56 1056 39 HOH HOH . G 4 HOH A 57 1057 63 HOH HOH . G 4 HOH A 58 1058 6 HOH HOH . G 4 HOH A 59 1059 87 HOH HOH . G 4 HOH A 60 1060 97 HOH HOH . G 4 HOH A 61 1061 67 HOH HOH . G 4 HOH A 62 1062 65 HOH HOH . G 4 HOH A 63 1063 58 HOH HOH . G 4 HOH A 64 1064 134 HOH HOH . G 4 HOH A 65 1065 50 HOH HOH . G 4 HOH A 66 1066 107 HOH HOH . G 4 HOH A 67 1067 14 HOH HOH . G 4 HOH A 68 1068 129 HOH HOH . G 4 HOH A 69 1069 130 HOH HOH . G 4 HOH A 70 1070 128 HOH HOH . G 4 HOH A 71 1071 113 HOH HOH . G 4 HOH A 72 1072 112 HOH HOH . G 4 HOH A 73 1073 30 HOH HOH . G 4 HOH A 74 1074 82 HOH HOH . H 4 HOH B 1 1001 27 HOH HOH . H 4 HOH B 2 1002 80 HOH HOH . H 4 HOH B 3 1003 48 HOH HOH . H 4 HOH B 4 1004 32 HOH HOH . H 4 HOH B 5 1005 86 HOH HOH . H 4 HOH B 6 1006 104 HOH HOH . H 4 HOH B 7 1007 138 HOH HOH . H 4 HOH B 8 1008 79 HOH HOH . H 4 HOH B 9 1009 102 HOH HOH . H 4 HOH B 10 1010 9 HOH HOH . H 4 HOH B 11 1011 52 HOH HOH . H 4 HOH B 12 1012 35 HOH HOH . H 4 HOH B 13 1013 29 HOH HOH . H 4 HOH B 14 1014 11 HOH HOH . H 4 HOH B 15 1015 127 HOH HOH . H 4 HOH B 16 1016 74 HOH HOH . H 4 HOH B 17 1017 76 HOH HOH . H 4 HOH B 18 1018 54 HOH HOH . H 4 HOH B 19 1019 110 HOH HOH . H 4 HOH B 20 1020 89 HOH HOH . H 4 HOH B 21 1021 4 HOH HOH . H 4 HOH B 22 1022 45 HOH HOH . H 4 HOH B 23 1023 59 HOH HOH . H 4 HOH B 24 1024 78 HOH HOH . H 4 HOH B 25 1025 55 HOH HOH . H 4 HOH B 26 1026 73 HOH HOH . H 4 HOH B 27 1027 42 HOH HOH . H 4 HOH B 28 1028 28 HOH HOH . H 4 HOH B 29 1029 88 HOH HOH . H 4 HOH B 30 1030 49 HOH HOH . H 4 HOH B 31 1031 19 HOH HOH . H 4 HOH B 32 1032 124 HOH HOH . H 4 HOH B 33 1033 2 HOH HOH . H 4 HOH B 34 1034 126 HOH HOH . H 4 HOH B 35 1035 1 HOH HOH . H 4 HOH B 36 1036 5 HOH HOH . H 4 HOH B 37 1037 105 HOH HOH . H 4 HOH B 38 1038 43 HOH HOH . H 4 HOH B 39 1039 93 HOH HOH . H 4 HOH B 40 1040 101 HOH HOH . H 4 HOH B 41 1041 38 HOH HOH . H 4 HOH B 42 1042 116 HOH HOH . H 4 HOH B 43 1043 66 HOH HOH . H 4 HOH B 44 1044 61 HOH HOH . H 4 HOH B 45 1045 108 HOH HOH . H 4 HOH B 46 1046 133 HOH HOH . H 4 HOH B 47 1047 114 HOH HOH . H 4 HOH B 48 1048 141 HOH HOH . H 4 HOH B 49 1049 120 HOH HOH . H 4 HOH B 50 1050 106 HOH HOH . H 4 HOH B 51 1051 99 HOH HOH . H 4 HOH B 52 1052 135 HOH HOH . H 4 HOH B 53 1053 115 HOH HOH . H 4 HOH B 54 1054 140 HOH HOH . H 4 HOH B 55 1055 46 HOH HOH . H 4 HOH B 56 1056 122 HOH HOH . H 4 HOH B 57 1057 131 HOH HOH . H 4 HOH B 58 1058 85 HOH HOH . H 4 HOH B 59 1059 8 HOH HOH . H 4 HOH B 60 1060 98 HOH HOH . H 4 HOH B 61 1061 95 HOH HOH . H 4 HOH B 62 1062 24 HOH HOH . I 4 HOH C 1 701 136 HOH HOH . I 4 HOH C 2 702 84 HOH HOH . I 4 HOH C 3 703 125 HOH HOH . J 4 HOH D 1 701 81 HOH HOH . J 4 HOH D 2 702 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5JY . . . E 3 16.721 -0.355 0.164 1 30.56 ? O01 5JY 900 A 1 HETATM 2 C C02 5JY . . . E 3 17.335 -0.717 1.375 1 30.32 ? C02 5JY 900 A 1 HETATM 3 C C03 5JY . . . E 3 18.649 -1.162 1.384 1 27.88 ? C03 5JY 900 A 1 HETATM 4 C C04 5JY . . . E 3 19.249 -1.52 2.585 1 26.98 ? C04 5JY 900 A 1 HETATM 5 C C05 5JY . . . E 3 18.539 -1.443 3.778 1 27.96 ? C05 5JY 900 A 1 HETATM 6 C C06 5JY . . . E 3 19.245 -1.831 5.072 1 29.67 ? C06 5JY 900 A 1 HETATM 7 C C07 5JY . . . E 3 20.703 -1.417 5.167 1 33.19 ? C07 5JY 900 A 1 HETATM 8 C C08 5JY . . . E 3 21.023 -0.068 5.254 1 31.71 ? C08 5JY 900 A 1 HETATM 9 C C09 5JY . . . E 3 22.346 0.337 5.327 1 33.97 ? C09 5JY 900 A 1 HETATM 10 C C10 5JY . . . E 3 23.359 -0.61 5.307 1 39.51 ? C10 5JY 900 A 1 HETATM 11 O O11 5JY . . . E 3 24.706 -0.201 5.381 1 41.31 ? O11 5JY 900 A 1 HETATM 12 C C12 5JY . . . E 3 23.048 -1.96 5.213 1 37.06 ? C12 5JY 900 A 1 HETATM 13 C C13 5JY . . . E 3 21.721 -2.361 5.137 1 37.01 ? C13 5JY 900 A 1 HETATM 14 C C14 5JY . . . E 3 18.672 -2.603 6.038 1 32.46 ? C14 5JY 900 A 1 HETATM 15 C C15 5JY . . . E 3 19.26 -2.718 7.425 1 31.97 ? C15 5JY 900 A 1 HETATM 16 C C16 5JY . . . E 3 19.507 -4.168 7.798 1 31.72 ? C16 5JY 900 A 1 HETATM 17 C C17 5JY . . . E 3 18.256 -5.017 7.622 1 36.57 ? C17 5JY 900 A 1 HETATM 18 C C18 5JY . . . E 3 18.58 -6.464 7.919 1 45.03 ? C18 5JY 900 A 1 HETATM 19 C C19 5JY . . . E 3 17.377 -7.226 8.427 1 50.47 ? C19 5JY 900 A 1 HETATM 20 C C20 5JY . . . E 3 17.702 -4.914 6.211 1 35.62 ? C20 5JY 900 A 1 HETATM 21 C C21 5JY . . . E 3 17.459 -3.478 5.811 1 33.93 ? C21 5JY 900 A 1 HETATM 22 C C22 5JY . . . E 3 17.227 -0.982 3.756 1 28.76 ? C22 5JY 900 A 1 HETATM 23 C C23 5JY . . . E 3 16.621 -0.631 2.56 1 26.71 ? C23 5JY 900 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #