data_5DZ3 # _model_server_result.job_id pqrZNrN8dfZgV92jW0qHkQ _model_server_result.datetime_utc '2024-11-30 10:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5DZ3 # _exptl.entry_id 5DZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.378 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-{[4-(fluoromethyl)cyclohexylidene]methanediyl}diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.96 _cell.angle_gamma 90 _cell.entry_id 5DZ3 _cell.length_a 53.986 _cell.length_b 80.804 _cell.length_c 58.073 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C20 H21 F O2' _chem_comp.formula_weight 312.378 _chem_comp.id 5JX _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-{[4-(fluoromethyl)cyclohexylidene]methanediyl}diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 5JX sing 1 n n C23 C02 5JX doub 2 n y C23 C22 5JX sing 3 n y C02 C03 5JX sing 4 n y C22 C05 5JX doub 5 n y C03 C04 5JX doub 6 n y C05 C04 5JX sing 7 n y C05 C06 5JX sing 8 n n C06 C07 5JX sing 9 n n C06 C14 5JX doub 10 n n C08 C07 5JX doub 11 n y C08 C09 5JX sing 12 n y C07 C13 5JX sing 13 n y C09 C10 5JX doub 14 n y C13 C12 5JX doub 15 n y C10 C12 5JX sing 16 n y C10 O11 5JX sing 17 n n C15 C14 5JX sing 18 n n C15 C16 5JX sing 19 n n C14 C21 5JX sing 20 n n C16 C17 5JX sing 21 n n C21 C20 5JX sing 22 n n C20 C17 5JX sing 23 n n C17 C18 5JX sing 24 n n F19 C18 5JX sing 25 n n O01 H1 5JX sing 26 n n C03 H2 5JX sing 27 n n C04 H3 5JX sing 28 n n C08 H5 5JX sing 29 n n C09 H6 5JX sing 30 n n O11 H7 5JX sing 31 n n C12 H8 5JX sing 32 n n C13 H9 5JX sing 33 n n C15 H11 5JX sing 34 n n C15 H12 5JX sing 35 n n C16 H13 5JX sing 36 n n C16 H14 5JX sing 37 n n C17 H15 5JX sing 38 n n C18 H16 5JX sing 39 n n C18 H17 5JX sing 40 n n C20 H18 5JX sing 41 n n C20 H19 5JX sing 42 n n C21 H20 5JX sing 43 n n C21 H21 5JX sing 44 n n C22 H22 5JX sing 45 n n C23 H23 5JX sing 46 n n # _atom_sites.entry_id 5DZ3 _atom_sites.fract_transf_matrix[1][1] 0.018523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006727 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5JX A 1 900 900 5JX UNK . F 3 5JX B 1 901 901 5JX UNK . G 4 HOH A 1 1001 126 HOH HOH . G 4 HOH A 2 1002 128 HOH HOH . G 4 HOH A 3 1003 37 HOH HOH . G 4 HOH A 4 1004 82 HOH HOH . G 4 HOH A 5 1005 36 HOH HOH . G 4 HOH A 6 1006 30 HOH HOH . G 4 HOH A 7 1007 135 HOH HOH . G 4 HOH A 8 1008 14 HOH HOH . G 4 HOH A 9 1009 26 HOH HOH . G 4 HOH A 10 1010 78 HOH HOH . G 4 HOH A 11 1011 28 HOH HOH . G 4 HOH A 12 1012 4 HOH HOH . G 4 HOH A 13 1013 61 HOH HOH . G 4 HOH A 14 1014 38 HOH HOH . G 4 HOH A 15 1015 79 HOH HOH . G 4 HOH A 16 1016 43 HOH HOH . G 4 HOH A 17 1017 23 HOH HOH . G 4 HOH A 18 1018 18 HOH HOH . G 4 HOH A 19 1019 20 HOH HOH . G 4 HOH A 20 1020 7 HOH HOH . G 4 HOH A 21 1021 72 HOH HOH . G 4 HOH A 22 1022 122 HOH HOH . G 4 HOH A 23 1023 24 HOH HOH . G 4 HOH A 24 1024 40 HOH HOH . G 4 HOH A 25 1025 132 HOH HOH . G 4 HOH A 26 1026 130 HOH HOH . G 4 HOH A 27 1027 11 HOH HOH . G 4 HOH A 28 1028 76 HOH HOH . G 4 HOH A 29 1029 44 HOH HOH . G 4 HOH A 30 1030 80 HOH HOH . G 4 HOH A 31 1031 118 HOH HOH . G 4 HOH A 32 1032 103 HOH HOH . G 4 HOH A 33 1033 15 HOH HOH . G 4 HOH A 34 1034 8 HOH HOH . G 4 HOH A 35 1035 3 HOH HOH . G 4 HOH A 36 1036 141 HOH HOH . G 4 HOH A 37 1037 121 HOH HOH . G 4 HOH A 38 1038 5 HOH HOH . G 4 HOH A 39 1039 6 HOH HOH . G 4 HOH A 40 1040 109 HOH HOH . G 4 HOH A 41 1041 29 HOH HOH . G 4 HOH A 42 1042 71 HOH HOH . G 4 HOH A 43 1043 101 HOH HOH . G 4 HOH A 44 1044 84 HOH HOH . G 4 HOH A 45 1045 95 HOH HOH . G 4 HOH A 46 1046 129 HOH HOH . G 4 HOH A 47 1047 46 HOH HOH . G 4 HOH A 48 1048 98 HOH HOH . G 4 HOH A 49 1049 51 HOH HOH . G 4 HOH A 50 1050 12 HOH HOH . G 4 HOH A 51 1051 42 HOH HOH . G 4 HOH A 52 1052 27 HOH HOH . G 4 HOH A 53 1053 66 HOH HOH . G 4 HOH A 54 1054 50 HOH HOH . G 4 HOH A 55 1055 59 HOH HOH . G 4 HOH A 56 1056 56 HOH HOH . G 4 HOH A 57 1057 99 HOH HOH . G 4 HOH A 58 1058 107 HOH HOH . G 4 HOH A 59 1059 33 HOH HOH . G 4 HOH A 60 1060 140 HOH HOH . G 4 HOH A 61 1061 45 HOH HOH . G 4 HOH A 62 1062 53 HOH HOH . G 4 HOH A 63 1063 65 HOH HOH . G 4 HOH A 64 1064 62 HOH HOH . G 4 HOH A 65 1065 145 HOH HOH . G 4 HOH A 66 1066 149 HOH HOH . G 4 HOH A 67 1067 41 HOH HOH . G 4 HOH A 68 1068 138 HOH HOH . G 4 HOH A 69 1069 133 HOH HOH . G 4 HOH A 70 1070 74 HOH HOH . G 4 HOH A 71 1071 91 HOH HOH . G 4 HOH A 72 1072 93 HOH HOH . G 4 HOH A 73 1073 139 HOH HOH . G 4 HOH A 74 1074 146 HOH HOH . G 4 HOH A 75 1075 143 HOH HOH . G 4 HOH A 76 1076 85 HOH HOH . G 4 HOH A 77 1077 22 HOH HOH . G 4 HOH A 78 1078 83 HOH HOH . G 4 HOH A 79 1079 73 HOH HOH . H 4 HOH B 1 1001 19 HOH HOH . H 4 HOH B 2 1002 60 HOH HOH . H 4 HOH B 3 1003 117 HOH HOH . H 4 HOH B 4 1004 31 HOH HOH . H 4 HOH B 5 1005 114 HOH HOH . H 4 HOH B 6 1006 63 HOH HOH . H 4 HOH B 7 1007 131 HOH HOH . H 4 HOH B 8 1008 68 HOH HOH . H 4 HOH B 9 1009 64 HOH HOH . H 4 HOH B 10 1010 49 HOH HOH . H 4 HOH B 11 1011 96 HOH HOH . H 4 HOH B 12 1012 105 HOH HOH . H 4 HOH B 13 1013 113 HOH HOH . H 4 HOH B 14 1014 13 HOH HOH . H 4 HOH B 15 1015 67 HOH HOH . H 4 HOH B 16 1016 106 HOH HOH . H 4 HOH B 17 1017 123 HOH HOH . H 4 HOH B 18 1018 120 HOH HOH . H 4 HOH B 19 1019 144 HOH HOH . H 4 HOH B 20 1020 90 HOH HOH . H 4 HOH B 21 1021 52 HOH HOH . H 4 HOH B 22 1022 55 HOH HOH . H 4 HOH B 23 1023 81 HOH HOH . H 4 HOH B 24 1024 88 HOH HOH . H 4 HOH B 25 1025 86 HOH HOH . H 4 HOH B 26 1026 102 HOH HOH . H 4 HOH B 27 1027 89 HOH HOH . H 4 HOH B 28 1028 10 HOH HOH . H 4 HOH B 29 1029 69 HOH HOH . H 4 HOH B 30 1030 9 HOH HOH . H 4 HOH B 31 1031 25 HOH HOH . H 4 HOH B 32 1032 21 HOH HOH . H 4 HOH B 33 1033 1 HOH HOH . H 4 HOH B 34 1034 39 HOH HOH . H 4 HOH B 35 1035 16 HOH HOH . H 4 HOH B 36 1036 111 HOH HOH . H 4 HOH B 37 1037 47 HOH HOH . H 4 HOH B 38 1038 150 HOH HOH . H 4 HOH B 39 1039 2 HOH HOH . H 4 HOH B 40 1040 100 HOH HOH . H 4 HOH B 41 1041 75 HOH HOH . H 4 HOH B 42 1042 35 HOH HOH . H 4 HOH B 43 1043 58 HOH HOH . H 4 HOH B 44 1044 48 HOH HOH . H 4 HOH B 45 1045 70 HOH HOH . H 4 HOH B 46 1046 104 HOH HOH . H 4 HOH B 47 1047 112 HOH HOH . H 4 HOH B 48 1048 77 HOH HOH . H 4 HOH B 49 1049 92 HOH HOH . H 4 HOH B 50 1050 119 HOH HOH . H 4 HOH B 51 1051 124 HOH HOH . H 4 HOH B 52 1052 147 HOH HOH . H 4 HOH B 53 1053 127 HOH HOH . H 4 HOH B 54 1054 137 HOH HOH . H 4 HOH B 55 1055 57 HOH HOH . H 4 HOH B 56 1056 125 HOH HOH . H 4 HOH B 57 1057 94 HOH HOH . H 4 HOH B 58 1058 54 HOH HOH . H 4 HOH B 59 1059 32 HOH HOH . H 4 HOH B 60 1060 110 HOH HOH . H 4 HOH B 61 1061 136 HOH HOH . H 4 HOH B 62 1062 97 HOH HOH . H 4 HOH B 63 1063 87 HOH HOH . H 4 HOH B 64 1064 115 HOH HOH . H 4 HOH B 65 1065 17 HOH HOH . H 4 HOH B 66 1066 116 HOH HOH . H 4 HOH B 67 1067 134 HOH HOH . I 4 HOH C 1 701 34 HOH HOH . I 4 HOH C 2 702 142 HOH HOH . J 4 HOH D 1 701 108 HOH HOH . J 4 HOH D 2 702 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5JX . . . F 3 6.514 7.288 34.444 1 32.69 ? O01 5JX 901 B 1 HETATM 2 C C02 5JX . . . F 3 7.767 7.016 33.937 1 31.54 ? C02 5JX 901 B 1 HETATM 3 C C03 5JX . . . F 3 8.043 7.11 32.587 1 31.8 ? C03 5JX 901 B 1 HETATM 4 C C04 5JX . . . F 3 9.305 6.829 32.109 1 31.79 ? C04 5JX 901 B 1 HETATM 5 C C05 5JX . . . F 3 10.311 6.477 33.009 1 31.89 ? C05 5JX 901 B 1 HETATM 6 C C06 5JX . . . F 3 11.766 6.129 32.555 1 41.29 ? C06 5JX 901 B 1 HETATM 7 C C07 5JX . . . F 3 12.469 4.897 33.213 1 30.4 ? C07 5JX 901 B 1 HETATM 8 C C08 5JX . . . F 3 11.94 3.614 33.111 1 29.42 ? C08 5JX 901 B 1 HETATM 9 C C09 5JX . . . F 3 12.573 2.545 33.717 1 30.27 ? C09 5JX 901 B 1 HETATM 10 C C10 5JX . . . F 3 13.74 2.721 34.417 1 30.55 ? C10 5JX 901 B 1 HETATM 11 O O11 5JX . . . F 3 14.347 1.643 35.003 1 31.74 ? O11 5JX 901 B 1 HETATM 12 C C12 5JX . . . F 3 14.264 3.994 34.526 1 31.75 ? C12 5JX 901 B 1 HETATM 13 C C13 5JX . . . F 3 13.641 5.085 33.93 1 31.1 ? C13 5JX 901 B 1 HETATM 14 C C14 5JX . . . F 3 12.488 6.941 31.72 1 42.2 ? C14 5JX 901 B 1 HETATM 15 C C15 5JX . . . F 3 11.994 8.266 31.239 1 43.29 ? C15 5JX 901 B 1 HETATM 16 C C16 5JX . . . F 3 13.117 9.255 31.052 1 44 ? C16 5JX 901 B 1 HETATM 17 C C17 5JX . . . F 3 14.266 8.643 30.28 1 44.85 ? C17 5JX 901 B 1 HETATM 18 C C18 5JX . . . F 3 15.305 9.664 29.948 1 47.61 ? C18 5JX 901 B 1 HETATM 19 F F19 5JX . . . F 3 16.396 9.46 30.648 1 53.24 ? F19 5JX 901 B 1 HETATM 20 C C20 5JX . . . F 3 14.759 7.393 30.963 1 43.65 ? C20 5JX 901 B 1 HETATM 21 C C21 5JX . . . F 3 13.634 6.404 30.915 1 42.63 ? C21 5JX 901 B 1 HETATM 22 C C22 5JX . . . F 3 10.019 6.375 34.329 1 31.86 ? C22 5JX 901 B 1 HETATM 23 C C23 5JX . . . F 3 8.755 6.656 34.809 1 31.12 ? C23 5JX 901 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #