data_5DZ6 # _model_server_result.job_id 5xUZY9Go1Edolpec_odi_Q _model_server_result.datetime_utc '2024-10-28 02:42:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5DZ6 # _exptl.entry_id 5DZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DZ6 _cell.length_a 53.19 _cell.length_b 70.43 _cell.length_c 76.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5DZ6 _atom_sites.fract_transf_matrix[1][1] 0.018801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 BR A 1 302 1 BR BR . D 3 BR A 1 303 2 BR BR . E 4 CL A 1 304 3 CL CL . F 4 CL A 1 305 4 CL CL . G 5 EDO A 1 306 1 EDO EDO . H 6 PEG A 1 307 1 PEG PEG . I 7 HOH A 1 401 291 HOH HOH . I 7 HOH A 2 402 248 HOH HOH . I 7 HOH A 3 403 199 HOH HOH . I 7 HOH A 4 404 251 HOH HOH . I 7 HOH A 5 405 276 HOH HOH . I 7 HOH A 6 406 191 HOH HOH . I 7 HOH A 7 407 148 HOH HOH . I 7 HOH A 8 408 216 HOH HOH . I 7 HOH A 9 409 246 HOH HOH . I 7 HOH A 10 410 273 HOH HOH . I 7 HOH A 11 411 157 HOH HOH . I 7 HOH A 12 412 297 HOH HOH . I 7 HOH A 13 413 57 HOH HOH . I 7 HOH A 14 414 290 HOH HOH . I 7 HOH A 15 415 136 HOH HOH . I 7 HOH A 16 416 129 HOH HOH . I 7 HOH A 17 417 254 HOH HOH . I 7 HOH A 18 418 116 HOH HOH . I 7 HOH A 19 419 134 HOH HOH . I 7 HOH A 20 420 72 HOH HOH . I 7 HOH A 21 421 207 HOH HOH . I 7 HOH A 22 422 185 HOH HOH . I 7 HOH A 23 423 284 HOH HOH . I 7 HOH A 24 424 31 HOH HOH . I 7 HOH A 25 425 272 HOH HOH . I 7 HOH A 26 426 88 HOH HOH . I 7 HOH A 27 427 230 HOH HOH . I 7 HOH A 28 428 253 HOH HOH . I 7 HOH A 29 429 214 HOH HOH . I 7 HOH A 30 430 296 HOH HOH . I 7 HOH A 31 431 85 HOH HOH . I 7 HOH A 32 432 256 HOH HOH . I 7 HOH A 33 433 190 HOH HOH . I 7 HOH A 34 434 262 HOH HOH . I 7 HOH A 35 435 187 HOH HOH . I 7 HOH A 36 436 18 HOH HOH . I 7 HOH A 37 437 5 HOH HOH . I 7 HOH A 38 438 168 HOH HOH . I 7 HOH A 39 439 95 HOH HOH . I 7 HOH A 40 440 118 HOH HOH . I 7 HOH A 41 441 270 HOH HOH . I 7 HOH A 42 442 156 HOH HOH . I 7 HOH A 43 443 27 HOH HOH . I 7 HOH A 44 444 50 HOH HOH . I 7 HOH A 45 445 188 HOH HOH . I 7 HOH A 46 446 51 HOH HOH . I 7 HOH A 47 447 8 HOH HOH . I 7 HOH A 48 448 60 HOH HOH . I 7 HOH A 49 449 300 HOH HOH . I 7 HOH A 50 450 244 HOH HOH . I 7 HOH A 51 451 192 HOH HOH . I 7 HOH A 52 452 82 HOH HOH . I 7 HOH A 53 453 158 HOH HOH . I 7 HOH A 54 454 128 HOH HOH . I 7 HOH A 55 455 155 HOH HOH . I 7 HOH A 56 456 261 HOH HOH . I 7 HOH A 57 457 221 HOH HOH . I 7 HOH A 58 458 40 HOH HOH . I 7 HOH A 59 459 17 HOH HOH . I 7 HOH A 60 460 197 HOH HOH . I 7 HOH A 61 461 241 HOH HOH . I 7 HOH A 62 462 228 HOH HOH . I 7 HOH A 63 463 25 HOH HOH . I 7 HOH A 64 464 162 HOH HOH . I 7 HOH A 65 465 163 HOH HOH . I 7 HOH A 66 466 299 HOH HOH . I 7 HOH A 67 467 49 HOH HOH . I 7 HOH A 68 468 79 HOH HOH . I 7 HOH A 69 469 219 HOH HOH . I 7 HOH A 70 470 167 HOH HOH . I 7 HOH A 71 471 213 HOH HOH . I 7 HOH A 72 472 154 HOH HOH . I 7 HOH A 73 473 2 HOH HOH . I 7 HOH A 74 474 21 HOH HOH . I 7 HOH A 75 475 236 HOH HOH . I 7 HOH A 76 476 231 HOH HOH . I 7 HOH A 77 477 91 HOH HOH . I 7 HOH A 78 478 237 HOH HOH . I 7 HOH A 79 479 52 HOH HOH . I 7 HOH A 80 480 32 HOH HOH . I 7 HOH A 81 481 23 HOH HOH . I 7 HOH A 82 482 83 HOH HOH . I 7 HOH A 83 483 35 HOH HOH . I 7 HOH A 84 484 53 HOH HOH . I 7 HOH A 85 485 217 HOH HOH . I 7 HOH A 86 486 166 HOH HOH . I 7 HOH A 87 487 33 HOH HOH . I 7 HOH A 88 488 15 HOH HOH . I 7 HOH A 89 489 202 HOH HOH . I 7 HOH A 90 490 151 HOH HOH . I 7 HOH A 91 491 210 HOH HOH . I 7 HOH A 92 492 45 HOH HOH . I 7 HOH A 93 493 125 HOH HOH . I 7 HOH A 94 494 165 HOH HOH . I 7 HOH A 95 495 10 HOH HOH . I 7 HOH A 96 496 90 HOH HOH . I 7 HOH A 97 497 93 HOH HOH . I 7 HOH A 98 498 109 HOH HOH . I 7 HOH A 99 499 39 HOH HOH . I 7 HOH A 100 500 229 HOH HOH . I 7 HOH A 101 501 26 HOH HOH . I 7 HOH A 102 502 38 HOH HOH . I 7 HOH A 103 503 131 HOH HOH . I 7 HOH A 104 504 218 HOH HOH . I 7 HOH A 105 505 73 HOH HOH . I 7 HOH A 106 506 70 HOH HOH . I 7 HOH A 107 507 250 HOH HOH . I 7 HOH A 108 508 96 HOH HOH . I 7 HOH A 109 509 46 HOH HOH . I 7 HOH A 110 510 285 HOH HOH . I 7 HOH A 111 511 149 HOH HOH . I 7 HOH A 112 512 11 HOH HOH . I 7 HOH A 113 513 160 HOH HOH . I 7 HOH A 114 514 81 HOH HOH . I 7 HOH A 115 515 19 HOH HOH . I 7 HOH A 116 516 205 HOH HOH . I 7 HOH A 117 517 98 HOH HOH . I 7 HOH A 118 518 7 HOH HOH . I 7 HOH A 119 519 220 HOH HOH . I 7 HOH A 120 520 58 HOH HOH . I 7 HOH A 121 521 274 HOH HOH . I 7 HOH A 122 522 41 HOH HOH . I 7 HOH A 123 523 28 HOH HOH . I 7 HOH A 124 524 159 HOH HOH . I 7 HOH A 125 525 145 HOH HOH . I 7 HOH A 126 526 140 HOH HOH . I 7 HOH A 127 527 139 HOH HOH . I 7 HOH A 128 528 9 HOH HOH . I 7 HOH A 129 529 63 HOH HOH . I 7 HOH A 130 530 238 HOH HOH . I 7 HOH A 131 531 42 HOH HOH . I 7 HOH A 132 532 64 HOH HOH . I 7 HOH A 133 533 170 HOH HOH . I 7 HOH A 134 534 68 HOH HOH . I 7 HOH A 135 535 120 HOH HOH . I 7 HOH A 136 536 243 HOH HOH . I 7 HOH A 137 537 174 HOH HOH . I 7 HOH A 138 538 4 HOH HOH . I 7 HOH A 139 539 61 HOH HOH . I 7 HOH A 140 540 179 HOH HOH . I 7 HOH A 141 541 20 HOH HOH . I 7 HOH A 142 542 234 HOH HOH . I 7 HOH A 143 543 182 HOH HOH . I 7 HOH A 144 544 54 HOH HOH . I 7 HOH A 145 545 24 HOH HOH . I 7 HOH A 146 546 239 HOH HOH . I 7 HOH A 147 547 180 HOH HOH . I 7 HOH A 148 548 92 HOH HOH . I 7 HOH A 149 549 56 HOH HOH . I 7 HOH A 150 550 255 HOH HOH . I 7 HOH A 151 551 137 HOH HOH . I 7 HOH A 152 552 269 HOH HOH . I 7 HOH A 153 553 114 HOH HOH . I 7 HOH A 154 554 13 HOH HOH . I 7 HOH A 155 555 161 HOH HOH . I 7 HOH A 156 556 36 HOH HOH . I 7 HOH A 157 557 29 HOH HOH . I 7 HOH A 158 558 69 HOH HOH . I 7 HOH A 159 559 87 HOH HOH . I 7 HOH A 160 560 124 HOH HOH . I 7 HOH A 161 561 3 HOH HOH . I 7 HOH A 162 562 76 HOH HOH . I 7 HOH A 163 563 16 HOH HOH . I 7 HOH A 164 564 80 HOH HOH . I 7 HOH A 165 565 43 HOH HOH . I 7 HOH A 166 566 47 HOH HOH . I 7 HOH A 167 567 146 HOH HOH . I 7 HOH A 168 568 150 HOH HOH . I 7 HOH A 169 569 37 HOH HOH . I 7 HOH A 170 570 107 HOH HOH . I 7 HOH A 171 571 224 HOH HOH . I 7 HOH A 172 572 183 HOH HOH . I 7 HOH A 173 573 48 HOH HOH . I 7 HOH A 174 574 208 HOH HOH . I 7 HOH A 175 575 59 HOH HOH . I 7 HOH A 176 576 141 HOH HOH . I 7 HOH A 177 577 30 HOH HOH . I 7 HOH A 178 578 144 HOH HOH . I 7 HOH A 179 579 75 HOH HOH . I 7 HOH A 180 580 22 HOH HOH . I 7 HOH A 181 581 34 HOH HOH . I 7 HOH A 182 582 198 HOH HOH . I 7 HOH A 183 583 78 HOH HOH . I 7 HOH A 184 584 292 HOH HOH . I 7 HOH A 185 585 304 HOH HOH . I 7 HOH A 186 586 12 HOH HOH . I 7 HOH A 187 587 211 HOH HOH . I 7 HOH A 188 588 89 HOH HOH . I 7 HOH A 189 589 55 HOH HOH . I 7 HOH A 190 590 135 HOH HOH . I 7 HOH A 191 591 127 HOH HOH . I 7 HOH A 192 592 196 HOH HOH . I 7 HOH A 193 593 99 HOH HOH . I 7 HOH A 194 594 71 HOH HOH . I 7 HOH A 195 595 257 HOH HOH . I 7 HOH A 196 596 6 HOH HOH . I 7 HOH A 197 597 281 HOH HOH . I 7 HOH A 198 598 280 HOH HOH . I 7 HOH A 199 599 94 HOH HOH . I 7 HOH A 200 600 175 HOH HOH . I 7 HOH A 201 601 84 HOH HOH . I 7 HOH A 202 602 62 HOH HOH . I 7 HOH A 203 603 142 HOH HOH . I 7 HOH A 204 604 195 HOH HOH . I 7 HOH A 205 605 177 HOH HOH . I 7 HOH A 206 606 100 HOH HOH . I 7 HOH A 207 607 209 HOH HOH . I 7 HOH A 208 608 232 HOH HOH . I 7 HOH A 209 609 189 HOH HOH . I 7 HOH A 210 610 184 HOH HOH . I 7 HOH A 211 611 86 HOH HOH . I 7 HOH A 212 612 225 HOH HOH . I 7 HOH A 213 613 164 HOH HOH . I 7 HOH A 214 614 268 HOH HOH . I 7 HOH A 215 615 130 HOH HOH . I 7 HOH A 216 616 44 HOH HOH . I 7 HOH A 217 617 206 HOH HOH . I 7 HOH A 218 618 293 HOH HOH . I 7 HOH A 219 619 152 HOH HOH . I 7 HOH A 220 620 67 HOH HOH . I 7 HOH A 221 621 77 HOH HOH . I 7 HOH A 222 622 172 HOH HOH . I 7 HOH A 223 623 110 HOH HOH . I 7 HOH A 224 624 252 HOH HOH . I 7 HOH A 225 625 275 HOH HOH . I 7 HOH A 226 626 143 HOH HOH . I 7 HOH A 227 627 282 HOH HOH . I 7 HOH A 228 628 222 HOH HOH . I 7 HOH A 229 629 74 HOH HOH . I 7 HOH A 230 630 287 HOH HOH . I 7 HOH A 231 631 201 HOH HOH . I 7 HOH A 232 632 115 HOH HOH . I 7 HOH A 233 633 227 HOH HOH . I 7 HOH A 234 634 295 HOH HOH . I 7 HOH A 235 635 283 HOH HOH . I 7 HOH A 236 636 203 HOH HOH . I 7 HOH A 237 637 289 HOH HOH . I 7 HOH A 238 638 1 HOH HOH . I 7 HOH A 239 639 119 HOH HOH . I 7 HOH A 240 640 14 HOH HOH . I 7 HOH A 241 641 66 HOH HOH . I 7 HOH A 242 642 215 HOH HOH . I 7 HOH A 243 643 279 HOH HOH . I 7 HOH A 244 644 212 HOH HOH . I 7 HOH A 245 645 286 HOH HOH . I 7 HOH A 246 646 200 HOH HOH . I 7 HOH A 247 647 258 HOH HOH . I 7 HOH A 248 648 132 HOH HOH . I 7 HOH A 249 649 65 HOH HOH . I 7 HOH A 250 650 105 HOH HOH . I 7 HOH A 251 651 103 HOH HOH . I 7 HOH A 252 652 263 HOH HOH . I 7 HOH A 253 653 173 HOH HOH . I 7 HOH A 254 654 176 HOH HOH . I 7 HOH A 255 655 294 HOH HOH . I 7 HOH A 256 656 260 HOH HOH . I 7 HOH A 257 657 249 HOH HOH . I 7 HOH A 258 658 240 HOH HOH . I 7 HOH A 259 659 121 HOH HOH . I 7 HOH A 260 660 104 HOH HOH . I 7 HOH A 261 661 194 HOH HOH . I 7 HOH A 262 662 108 HOH HOH . I 7 HOH A 263 663 186 HOH HOH . I 7 HOH A 264 664 267 HOH HOH . I 7 HOH A 265 665 266 HOH HOH . I 7 HOH A 266 666 126 HOH HOH . I 7 HOH A 267 667 288 HOH HOH . I 7 HOH A 268 668 193 HOH HOH . I 7 HOH A 269 669 242 HOH HOH . I 7 HOH A 270 670 301 HOH HOH . I 7 HOH A 271 671 271 HOH HOH . I 7 HOH A 272 672 264 HOH HOH . I 7 HOH A 273 673 226 HOH HOH . I 7 HOH A 274 674 171 HOH HOH . I 7 HOH A 275 675 181 HOH HOH . I 7 HOH A 276 676 278 HOH HOH . I 7 HOH A 277 677 113 HOH HOH . I 7 HOH A 278 678 204 HOH HOH . I 7 HOH A 279 679 223 HOH HOH . I 7 HOH A 280 680 233 HOH HOH . I 7 HOH A 281 681 303 HOH HOH . I 7 HOH A 282 682 122 HOH HOH . I 7 HOH A 283 683 302 HOH HOH . I 7 HOH A 284 684 101 HOH HOH . I 7 HOH A 285 685 106 HOH HOH . I 7 HOH A 286 686 111 HOH HOH . I 7 HOH A 287 687 112 HOH HOH . I 7 HOH A 288 688 245 HOH HOH . I 7 HOH A 289 689 138 HOH HOH . I 7 HOH A 290 690 123 HOH HOH . I 7 HOH A 291 691 97 HOH HOH . I 7 HOH A 292 692 169 HOH HOH . I 7 HOH A 293 693 117 HOH HOH . I 7 HOH A 294 694 147 HOH HOH . I 7 HOH A 295 695 102 HOH HOH . I 7 HOH A 296 696 178 HOH HOH . I 7 HOH A 297 697 133 HOH HOH . I 7 HOH A 298 698 259 HOH HOH . I 7 HOH A 299 699 247 HOH HOH . I 7 HOH A 300 700 153 HOH HOH . I 7 HOH A 301 701 298 HOH HOH . I 7 HOH A 302 702 235 HOH HOH . I 7 HOH A 303 703 277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 43.719 20.244 -7.433 1 25.01 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 5 44.273 21.086 -6.361 1 29.21 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 5 42.715 21.085 -8.225 1 23.24 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 5 41.595 20.442 -8.889 1 20.49 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #