data_5DZ7
#
_model_server_result.job_id            rDlfEbCFo3cBd3QIflTLXw 
_model_server_result.datetime_utc      '2024-11-05 00:15:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dz7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5DZ7 
#
_exptl.entry_id    5DZ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DZ7 
_cell.length_a            42.653 
_cell.length_b            54.546 
_cell.length_c            116.708 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DZ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5DZ7 
_atom_sites.fract_transf_matrix[1][1]    0.023445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018333 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 301 301 GOL GOL . 
C 2 GOL A 1 302 302 GOL GOL . 
D 2 GOL A 1 303 303 GOL GOL . 
E 3 CL A 1 304 304 CL CL . 
F 4 HOH A 1 401 447 HOH HOH . 
F 4 HOH A 2 402 433 HOH HOH . 
F 4 HOH A 3 403 413 HOH HOH . 
F 4 HOH A 4 404 404 HOH HOH . 
F 4 HOH A 5 405 442 HOH HOH . 
F 4 HOH A 6 406 472 HOH HOH . 
F 4 HOH A 7 407 425 HOH HOH . 
F 4 HOH A 8 408 451 HOH HOH . 
F 4 HOH A 9 409 445 HOH HOH . 
F 4 HOH A 10 410 431 HOH HOH . 
F 4 HOH A 11 411 438 HOH HOH . 
F 4 HOH A 12 412 444 HOH HOH . 
F 4 HOH A 13 413 459 HOH HOH . 
F 4 HOH A 14 414 410 HOH HOH . 
F 4 HOH A 15 415 403 HOH HOH . 
F 4 HOH A 16 416 475 HOH HOH . 
F 4 HOH A 17 417 456 HOH HOH . 
F 4 HOH A 18 418 449 HOH HOH . 
F 4 HOH A 19 419 441 HOH HOH . 
F 4 HOH A 20 420 450 HOH HOH . 
F 4 HOH A 21 421 455 HOH HOH . 
F 4 HOH A 22 422 411 HOH HOH . 
F 4 HOH A 23 423 406 HOH HOH . 
F 4 HOH A 24 424 446 HOH HOH . 
F 4 HOH A 25 425 432 HOH HOH . 
F 4 HOH A 26 426 462 HOH HOH . 
F 4 HOH A 27 427 423 HOH HOH . 
F 4 HOH A 28 428 452 HOH HOH . 
F 4 HOH A 29 429 437 HOH HOH . 
F 4 HOH A 30 430 463 HOH HOH . 
F 4 HOH A 31 431 418 HOH HOH . 
F 4 HOH A 32 432 420 HOH HOH . 
F 4 HOH A 33 433 453 HOH HOH . 
F 4 HOH A 34 434 460 HOH HOH . 
F 4 HOH A 35 435 458 HOH HOH . 
F 4 HOH A 36 436 457 HOH HOH . 
F 4 HOH A 37 437 448 HOH HOH . 
F 4 HOH A 38 438 424 HOH HOH . 
F 4 HOH A 39 439 443 HOH HOH . 
F 4 HOH A 40 440 414 HOH HOH . 
F 4 HOH A 41 441 428 HOH HOH . 
F 4 HOH A 42 442 434 HOH HOH . 
F 4 HOH A 43 443 416 HOH HOH . 
F 4 HOH A 44 444 439 HOH HOH . 
F 4 HOH A 45 445 465 HOH HOH . 
F 4 HOH A 46 446 405 HOH HOH . 
F 4 HOH A 47 447 473 HOH HOH . 
F 4 HOH A 48 448 415 HOH HOH . 
F 4 HOH A 49 449 461 HOH HOH . 
F 4 HOH A 50 450 419 HOH HOH . 
F 4 HOH A 51 451 429 HOH HOH . 
F 4 HOH A 52 452 474 HOH HOH . 
F 4 HOH A 53 453 421 HOH HOH . 
F 4 HOH A 54 454 430 HOH HOH . 
F 4 HOH A 55 455 422 HOH HOH . 
F 4 HOH A 56 456 407 HOH HOH . 
F 4 HOH A 57 457 426 HOH HOH . 
F 4 HOH A 58 458 427 HOH HOH . 
F 4 HOH A 59 459 408 HOH HOH . 
F 4 HOH A 60 460 471 HOH HOH . 
F 4 HOH A 61 461 412 HOH HOH . 
F 4 HOH A 62 462 417 HOH HOH . 
F 4 HOH A 63 463 469 HOH HOH . 
F 4 HOH A 64 464 409 HOH HOH . 
F 4 HOH A 65 465 401 HOH HOH . 
F 4 HOH A 66 466 470 HOH HOH . 
F 4 HOH A 67 467 467 HOH HOH . 
F 4 HOH A 68 468 454 HOH HOH . 
F 4 HOH A 69 469 466 HOH HOH . 
F 4 HOH A 70 470 402 HOH HOH . 
F 4 HOH A 71 471 440 HOH HOH . 
F 4 HOH A 72 472 468 HOH HOH . 
F 4 HOH A 73 473 436 HOH HOH . 
F 4 HOH A 74 474 435 HOH HOH . 
F 4 HOH A 75 475 464 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -7.755 -10.718 2.105 1 47.42 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . B 2 -8.49 -11.773 2.73 1 52.69 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . B 2 -6.345 -11.175 1.737 1 50.88 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . B 2 -5.856 -10.325 0.673 1 49.81 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . B 2 -5.472 -11.138 3.008 1 52.16 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . B 2 -4.071 -10.878 2.782 1 42.87 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#