data_5DZ8 # _model_server_result.job_id JVG_4ss9PWXJuEMgsv6u6Q _model_server_result.datetime_utc '2025-03-04 08:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5DZ8 # _exptl.entry_id 5DZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.31 _cell.angle_gamma 90 _cell.entry_id 5DZ8 _cell.length_a 148.14 _cell.length_b 34.42 _cell.length_c 92.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 24 A ILE 306 1_555 A N MSE 25 A MSE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 25 A MSE 307 1_555 A N THR 26 A THR 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A C ASP 40 A ASP 322 1_555 A N MSE 41 A MSE 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 41 A MSE 323 1_555 A N ILE 42 A ILE 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 B C ILE 24 B ILE 306 1_555 B N MSE 25 B MSE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale6 B C MSE 25 B MSE 307 1_555 B N THR 26 B THR 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 B C ASP 40 B ASP 322 1_555 B N MSE 41 B MSE 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C MSE 41 B MSE 323 1_555 B N ILE 42 B ILE 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5DZ8 _atom_sites.fract_transf_matrix[1][1] 0.00675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005144 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 501 1 ACT ACT . D 3 PEG A 1 502 1 PEG PEG . E 4 EDO A 1 503 1 EDO EDO . F 5 HOH A 1 601 41 HOH HOH . F 5 HOH A 2 602 47 HOH HOH . F 5 HOH A 3 603 28 HOH HOH . F 5 HOH A 4 604 17 HOH HOH . F 5 HOH A 5 605 23 HOH HOH . F 5 HOH A 6 606 18 HOH HOH . F 5 HOH A 7 607 11 HOH HOH . F 5 HOH A 8 608 42 HOH HOH . F 5 HOH A 9 609 119 HOH HOH . F 5 HOH A 10 610 123 HOH HOH . F 5 HOH A 11 611 10 HOH HOH . F 5 HOH A 12 612 126 HOH HOH . F 5 HOH A 13 613 7 HOH HOH . F 5 HOH A 14 614 125 HOH HOH . F 5 HOH A 15 615 33 HOH HOH . F 5 HOH A 16 616 8 HOH HOH . F 5 HOH A 17 617 9 HOH HOH . F 5 HOH A 18 618 37 HOH HOH . F 5 HOH A 19 619 127 HOH HOH . F 5 HOH A 20 620 15 HOH HOH . F 5 HOH A 21 621 122 HOH HOH . F 5 HOH A 22 622 49 HOH HOH . F 5 HOH A 23 623 31 HOH HOH . F 5 HOH A 24 624 14 HOH HOH . F 5 HOH A 25 625 118 HOH HOH . F 5 HOH A 26 626 46 HOH HOH . F 5 HOH A 27 627 40 HOH HOH . F 5 HOH A 28 628 128 HOH HOH . F 5 HOH A 29 629 45 HOH HOH . F 5 HOH A 30 630 129 HOH HOH . G 5 HOH B 1 501 84 HOH HOH . G 5 HOH B 2 502 21 HOH HOH . G 5 HOH B 3 503 77 HOH HOH . G 5 HOH B 4 504 2 HOH HOH . G 5 HOH B 5 505 36 HOH HOH . G 5 HOH B 6 506 38 HOH HOH . G 5 HOH B 7 507 124 HOH HOH . G 5 HOH B 8 508 48 HOH HOH . G 5 HOH B 9 509 130 HOH HOH . G 5 HOH B 10 510 76 HOH HOH . G 5 HOH B 11 511 19 HOH HOH . G 5 HOH B 12 512 93 HOH HOH . G 5 HOH B 13 513 86 HOH HOH . G 5 HOH B 14 514 22 HOH HOH . G 5 HOH B 15 515 70 HOH HOH . G 5 HOH B 16 516 35 HOH HOH . G 5 HOH B 17 517 24 HOH HOH . G 5 HOH B 18 518 27 HOH HOH . G 5 HOH B 19 519 16 HOH HOH . G 5 HOH B 20 520 26 HOH HOH . G 5 HOH B 21 521 68 HOH HOH . G 5 HOH B 22 522 94 HOH HOH . G 5 HOH B 23 523 20 HOH HOH . G 5 HOH B 24 524 98 HOH HOH . G 5 HOH B 25 525 4 HOH HOH . G 5 HOH B 26 526 13 HOH HOH . G 5 HOH B 27 527 3 HOH HOH . G 5 HOH B 28 528 30 HOH HOH . G 5 HOH B 29 529 55 HOH HOH . G 5 HOH B 30 530 75 HOH HOH . G 5 HOH B 31 531 73 HOH HOH . G 5 HOH B 32 532 69 HOH HOH . G 5 HOH B 33 533 54 HOH HOH . G 5 HOH B 34 534 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 2 10.669 -18.943 39.02 1 65.58 ? C ACT 501 A 1 HETATM 2 O O ACT . . . C 2 9.939 -19.872 38.57 1 64.36 ? O ACT 501 A 1 HETATM 3 O OXT ACT . . . C 2 11.031 -18.921 40.216 1 65.19 ? OXT ACT 501 A 1 HETATM 4 C CH3 ACT . . . C 2 11.121 -17.831 38.106 1 56.47 ? CH3 ACT 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #