data_5DZC
#
_model_server_result.job_id            FeCzQBrSYxQcHmnfCdDZCg 
_model_server_result.datetime_utc      '2024-11-01 07:18:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dzc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1006}' 
#
_entry.id    5DZC 
#
_exptl.entry_id    5DZC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.08 
_cell.angle_gamma         90 
_cell.entry_id            5DZC 
_cell.length_a            193.111 
_cell.length_b            117.906 
_cell.length_c            67.731 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DZC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -5.99735 0 67.464955 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 663 A ASN 662 1_555 G NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc2 B O1G ANP . A ANP 1001 1_555 G NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc3 B O2A ANP . A ANP 1001 1_555 G NA NA . A NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DZC 
_atom_sites.fract_transf_matrix[1][1]    0.005178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 1001 1001 ANP ANP . 
C 3 UNX A 1 1002 1004 UNX UNX . 
D 4 CL A 1 1003 1005 CL CL . 
E 4 CL A 1 1004 1006 CL CL . 
F 4 CL A 1 1005 1007 CL CL . 
G 5 NA A 1 1006 1 NA NA . 
H 3 UNX A 1 1007 2 UNX UNX . 
I 3 UNX A 1 1008 3 UNX UNX . 
J 3 UNX A 1 1009 4 UNX UNX . 
K 3 UNX A 1 1010 5 UNX UNX . 
L 3 UNX A 1 1011 6 UNX UNX . 
M 3 UNX A 1 1012 7 UNX UNX . 
N 6 HOH A 1 1101 61 HOH HOH . 
N 6 HOH A 2 1102 1048 HOH HOH . 
N 6 HOH A 3 1103 11 HOH HOH . 
N 6 HOH A 4 1104 1075 HOH HOH . 
N 6 HOH A 5 1105 52 HOH HOH . 
N 6 HOH A 6 1106 37 HOH HOH . 
N 6 HOH A 7 1107 1089 HOH HOH . 
N 6 HOH A 8 1108 86 HOH HOH . 
N 6 HOH A 9 1109 1032 HOH HOH . 
N 6 HOH A 10 1110 93 HOH HOH . 
N 6 HOH A 11 1111 89 HOH HOH . 
N 6 HOH A 12 1112 1068 HOH HOH . 
N 6 HOH A 13 1113 91 HOH HOH . 
N 6 HOH A 14 1114 1101 HOH HOH . 
N 6 HOH A 15 1115 1121 HOH HOH . 
N 6 HOH A 16 1116 1118 HOH HOH . 
N 6 HOH A 17 1117 1100 HOH HOH . 
N 6 HOH A 18 1118 114 HOH HOH . 
N 6 HOH A 19 1119 90 HOH HOH . 
N 6 HOH A 20 1120 1127 HOH HOH . 
N 6 HOH A 21 1121 51 HOH HOH . 
N 6 HOH A 22 1122 60 HOH HOH . 
N 6 HOH A 23 1123 1104 HOH HOH . 
N 6 HOH A 24 1124 1125 HOH HOH . 
N 6 HOH A 25 1125 1025 HOH HOH . 
N 6 HOH A 26 1126 82 HOH HOH . 
N 6 HOH A 27 1127 1092 HOH HOH . 
N 6 HOH A 28 1128 14 HOH HOH . 
N 6 HOH A 29 1129 1065 HOH HOH . 
N 6 HOH A 30 1130 1027 HOH HOH . 
N 6 HOH A 31 1131 1037 HOH HOH . 
N 6 HOH A 32 1132 53 HOH HOH . 
N 6 HOH A 33 1133 78 HOH HOH . 
N 6 HOH A 34 1134 23 HOH HOH . 
N 6 HOH A 35 1135 1133 HOH HOH . 
N 6 HOH A 36 1136 77 HOH HOH . 
N 6 HOH A 37 1137 1055 HOH HOH . 
N 6 HOH A 38 1138 70 HOH HOH . 
N 6 HOH A 39 1139 105 HOH HOH . 
N 6 HOH A 40 1140 1140 HOH HOH . 
N 6 HOH A 41 1141 72 HOH HOH . 
N 6 HOH A 42 1142 63 HOH HOH . 
N 6 HOH A 43 1143 1122 HOH HOH . 
N 6 HOH A 44 1144 49 HOH HOH . 
N 6 HOH A 45 1145 75 HOH HOH . 
N 6 HOH A 46 1146 116 HOH HOH . 
N 6 HOH A 47 1147 1096 HOH HOH . 
N 6 HOH A 48 1148 1123 HOH HOH . 
N 6 HOH A 49 1149 1077 HOH HOH . 
N 6 HOH A 50 1150 1076 HOH HOH . 
N 6 HOH A 51 1151 33 HOH HOH . 
N 6 HOH A 52 1152 54 HOH HOH . 
N 6 HOH A 53 1153 1097 HOH HOH . 
N 6 HOH A 54 1154 1039 HOH HOH . 
N 6 HOH A 55 1155 1054 HOH HOH . 
N 6 HOH A 56 1156 1119 HOH HOH . 
N 6 HOH A 57 1157 92 HOH HOH . 
N 6 HOH A 58 1158 1035 HOH HOH . 
N 6 HOH A 59 1159 64 HOH HOH . 
N 6 HOH A 60 1160 1033 HOH HOH . 
N 6 HOH A 61 1161 1110 HOH HOH . 
N 6 HOH A 62 1162 32 HOH HOH . 
N 6 HOH A 63 1163 13 HOH HOH . 
N 6 HOH A 64 1164 1060 HOH HOH . 
N 6 HOH A 65 1165 83 HOH HOH . 
N 6 HOH A 66 1166 108 HOH HOH . 
N 6 HOH A 67 1167 1022 HOH HOH . 
N 6 HOH A 68 1168 1026 HOH HOH . 
N 6 HOH A 69 1169 1107 HOH HOH . 
N 6 HOH A 70 1170 1038 HOH HOH . 
N 6 HOH A 71 1171 1061 HOH HOH . 
N 6 HOH A 72 1172 71 HOH HOH . 
N 6 HOH A 73 1173 7 HOH HOH . 
N 6 HOH A 74 1174 1093 HOH HOH . 
N 6 HOH A 75 1175 117 HOH HOH . 
N 6 HOH A 76 1176 46 HOH HOH . 
N 6 HOH A 77 1177 1088 HOH HOH . 
N 6 HOH A 78 1178 1132 HOH HOH . 
N 6 HOH A 79 1179 1053 HOH HOH . 
N 6 HOH A 80 1180 1129 HOH HOH . 
N 6 HOH A 81 1181 1112 HOH HOH . 
N 6 HOH A 82 1182 34 HOH HOH . 
N 6 HOH A 83 1183 1044 HOH HOH . 
N 6 HOH A 84 1184 76 HOH HOH . 
N 6 HOH A 85 1185 1109 HOH HOH . 
N 6 HOH A 86 1186 1020 HOH HOH . 
N 6 HOH A 87 1187 47 HOH HOH . 
N 6 HOH A 88 1188 1139 HOH HOH . 
N 6 HOH A 89 1189 1056 HOH HOH . 
N 6 HOH A 90 1190 79 HOH HOH . 
N 6 HOH A 91 1191 1131 HOH HOH . 
N 6 HOH A 92 1192 1057 HOH HOH . 
N 6 HOH A 93 1193 1128 HOH HOH . 
N 6 HOH A 94 1194 26 HOH HOH . 
N 6 HOH A 95 1195 1115 HOH HOH . 
N 6 HOH A 96 1196 1094 HOH HOH . 
N 6 HOH A 97 1197 1074 HOH HOH . 
N 6 HOH A 98 1198 1042 HOH HOH . 
N 6 HOH A 99 1199 1029 HOH HOH . 
N 6 HOH A 100 1200 80 HOH HOH . 
N 6 HOH A 101 1201 3 HOH HOH . 
N 6 HOH A 102 1202 1124 HOH HOH . 
N 6 HOH A 103 1203 1045 HOH HOH . 
N 6 HOH A 104 1204 1080 HOH HOH . 
N 6 HOH A 105 1205 1099 HOH HOH . 
N 6 HOH A 106 1206 87 HOH HOH . 
N 6 HOH A 107 1207 1052 HOH HOH . 
N 6 HOH A 108 1208 1021 HOH HOH . 
N 6 HOH A 109 1209 107 HOH HOH . 
N 6 HOH A 110 1210 57 HOH HOH . 
N 6 HOH A 111 1211 1067 HOH HOH . 
N 6 HOH A 112 1212 1095 HOH HOH . 
N 6 HOH A 113 1213 111 HOH HOH . 
N 6 HOH A 114 1214 1137 HOH HOH . 
N 6 HOH A 115 1215 29 HOH HOH . 
N 6 HOH A 116 1216 102 HOH HOH . 
N 6 HOH A 117 1217 68 HOH HOH . 
N 6 HOH A 118 1218 18 HOH HOH . 
N 6 HOH A 119 1219 16 HOH HOH . 
N 6 HOH A 120 1220 1098 HOH HOH . 
N 6 HOH A 121 1221 1102 HOH HOH . 
N 6 HOH A 122 1222 1126 HOH HOH . 
N 6 HOH A 123 1223 106 HOH HOH . 
N 6 HOH A 124 1224 19 HOH HOH . 
N 6 HOH A 125 1225 6 HOH HOH . 
N 6 HOH A 126 1226 40 HOH HOH . 
N 6 HOH A 127 1227 112 HOH HOH . 
N 6 HOH A 128 1228 10 HOH HOH . 
N 6 HOH A 129 1229 1066 HOH HOH . 
N 6 HOH A 130 1230 8 HOH HOH . 
N 6 HOH A 131 1231 110 HOH HOH . 
N 6 HOH A 132 1232 109 HOH HOH . 
N 6 HOH A 133 1233 56 HOH HOH . 
N 6 HOH A 134 1234 1043 HOH HOH . 
N 6 HOH A 135 1235 1023 HOH HOH . 
N 6 HOH A 136 1236 1117 HOH HOH . 
N 6 HOH A 137 1237 1 HOH HOH . 
N 6 HOH A 138 1238 118 HOH HOH . 
N 6 HOH A 139 1239 35 HOH HOH . 
N 6 HOH A 140 1240 1064 HOH HOH . 
N 6 HOH A 141 1241 101 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -25.967 
_atom_site.Cartn_y               62.896 
_atom_site.Cartn_z               34.808 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        77.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1006 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#