data_5E02 # _model_server_result.job_id fvrXS2f3f5f3YXckr4HJPw _model_server_result.datetime_utc '2025-04-25 04:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 5E02 # _exptl.entry_id 5E02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E02 _cell.length_a 76.432 _cell.length_b 106.6 _cell.length_c 125.298 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 40 n n PB O2B ADP sing 41 n n PB O3B ADP sing 42 n n PB O3A ADP sing 43 n n O2B HOB2 ADP sing 44 n n O3B HOB3 ADP sing 45 n n PA O1A ADP doub 46 n n PA O2A ADP sing 47 n n PA O3A ADP sing 48 n n PA O5' ADP sing 49 n n O2A HOA2 ADP sing 50 n n O5' C5' ADP sing 51 n n C5' C4' ADP sing 52 n n C5' "H5'1" ADP sing 53 n n C5' "H5'2" ADP sing 54 n n C4' O4' ADP sing 55 n n C4' C3' ADP sing 56 n n C4' H4' ADP sing 57 n n O4' C1' ADP sing 58 n n C3' O3' ADP sing 59 n n C3' C2' ADP sing 60 n n C3' H3' ADP sing 61 n n O3' HO3' ADP sing 62 n n C2' O2' ADP sing 63 n n C2' C1' ADP sing 64 n n C2' H2' ADP sing 65 n n O2' HO2' ADP sing 66 n n C1' N9 ADP sing 67 n n C1' H1' ADP sing 68 n n N9 C8 ADP sing 69 n y N9 C4 ADP sing 70 n y C8 N7 ADP doub 71 n y C8 H8 ADP sing 72 n n N7 C5 ADP sing 73 n y C5 C6 ADP sing 74 n y C5 C4 ADP doub 75 n y C6 N6 ADP sing 76 n n C6 N1 ADP doub 77 n y N6 HN61 ADP sing 78 n n N6 HN62 ADP sing 79 n n N1 C2 ADP sing 80 n y C2 N3 ADP doub 81 n y C2 H2 ADP sing 82 n n N3 C4 ADP sing 83 n y # _atom_sites.entry_id 5E02 _atom_sites.fract_transf_matrix[1][1] 0.013084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id ADP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 1000 _pdbx_nonpoly_scheme.pdb_mon_id ADP _pdbx_nonpoly_scheme.auth_mon_id ADP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 26.935 -105.674 288.942 1 181.05 ? PB ADP 1201 A 1 HETATM 2 O O1B ADP . . . C 3 27.021 -106.152 287.511 1 199.23 ? O1B ADP 1201 A 1 HETATM 3 O O2B ADP . . . C 3 25.521 -105.642 289.474 1 199.36 ? O2B ADP 1201 A 1 HETATM 4 O O3B ADP . . . C 3 27.717 -104.407 289.181 1 170.76 ? O3B ADP 1201 A 1 HETATM 5 P PA ADP . . . C 3 27.382 -107.006 291.402 1 207.06 ? PA ADP 1201 A 1 HETATM 6 O O1A ADP . . . C 3 26.473 -108.205 291.509 1 204.34 ? O1A ADP 1201 A 1 HETATM 7 O O2A ADP . . . C 3 26.956 -105.684 291.983 1 185.85 ? O2A ADP 1201 A 1 HETATM 8 O O3A ADP . . . C 3 27.696 -106.793 289.83 1 184.53 ? O3A ADP 1201 A 1 HETATM 9 O O5' ADP . . . C 3 28.761 -107.467 292.104 1 186.39 ? O5' ADP 1201 A 1 HETATM 10 C C5' ADP . . . C 3 29.917 -107.834 291.347 1 185.23 ? C5' ADP 1201 A 1 HETATM 11 C C4' ADP . . . C 3 30.614 -108.98 292.066 1 185.5 ? C4' ADP 1201 A 1 HETATM 12 O O4' ADP . . . C 3 31.712 -108.49 292.829 1 190.86 ? O4' ADP 1201 A 1 HETATM 13 C C3' ADP . . . C 3 29.631 -109.654 293.008 1 191.83 ? C3' ADP 1201 A 1 HETATM 14 O O3' ADP . . . C 3 29.609 -111.052 292.722 1 178.68 ? O3' ADP 1201 A 1 HETATM 15 C C2' ADP . . . C 3 30.17 -109.411 294.396 1 185.81 ? C2' ADP 1201 A 1 HETATM 16 O O2' ADP . . . C 3 30.18 -110.626 295.14 1 198.76 ? O2' ADP 1201 A 1 HETATM 17 C C1' ADP . . . C 3 31.584 -108.916 294.182 1 183.4 ? C1' ADP 1201 A 1 HETATM 18 N N9 ADP . . . C 3 31.823 -107.784 295.096 1 176.19 ? N9 ADP 1201 A 1 HETATM 19 C C8 ADP . . . C 3 30.923 -107.171 295.889 1 178.36 ? C8 ADP 1201 A 1 HETATM 20 N N7 ADP . . . C 3 31.511 -106.18 296.605 1 173.26 ? N7 ADP 1201 A 1 HETATM 21 C C5 ADP . . . C 3 32.813 -106.167 296.265 1 173.07 ? C5 ADP 1201 A 1 HETATM 22 C C6 ADP . . . C 3 34.008 -105.385 296.632 1 180.72 ? C6 ADP 1201 A 1 HETATM 23 N N6 ADP . . . C 3 33.909 -104.392 297.538 1 178.33 ? N6 ADP 1201 A 1 HETATM 24 N N1 ADP . . . C 3 35.182 -105.697 296.039 1 184.48 ? N1 ADP 1201 A 1 HETATM 25 C C2 ADP . . . C 3 35.279 -106.69 295.136 1 172.49 ? C2 ADP 1201 A 1 HETATM 26 N N3 ADP . . . C 3 34.236 -107.443 294.753 1 172.41 ? N3 ADP 1201 A 1 HETATM 27 C C4 ADP . . . C 3 33.01 -107.231 295.278 1 175.99 ? C4 ADP 1201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #