data_5E0E # _model_server_result.job_id ylfBuWBLASjV3aKAw_7ytg _model_server_result.datetime_utc '2024-11-30 21:58:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5E0E # _exptl.entry_id 5E0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E0E _cell.length_a 144.77 _cell.length_b 144.77 _cell.length_c 104.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 172 A TYR 200 1_555 A CA LEU 173 A LEU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 A SG CYS 408 A CYS 436 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 149 n n CHA C4D HEM doub 150 n n CHA HHA HEM sing 151 n n CHB C4A HEM sing 152 n n CHB C1B HEM doub 153 n n CHB HHB HEM sing 154 n n CHC C4B HEM sing 155 n n CHC C1C HEM doub 156 n n CHC HHC HEM sing 157 n n CHD C4C HEM doub 158 n n CHD C1D HEM sing 159 n n CHD HHD HEM sing 160 n n C1A C2A HEM doub 161 n y C1A NA HEM sing 162 n y C2A C3A HEM sing 163 n y C2A CAA HEM sing 164 n n C3A C4A HEM doub 165 n y C3A CMA HEM sing 166 n n C4A NA HEM sing 167 n y CMA HMA HEM sing 168 n n CMA HMAA HEM sing 169 n n CMA HMAB HEM sing 170 n n CAA CBA HEM sing 171 n n CAA HAA HEM sing 172 n n CAA HAAA HEM sing 173 n n CBA CGA HEM sing 174 n n CBA HBA HEM sing 175 n n CBA HBAA HEM sing 176 n n CGA O1A HEM doub 177 n n CGA O2A HEM sing 178 n n C1B C2B HEM sing 179 n n C1B NB HEM sing 180 n n C2B C3B HEM doub 181 n n C2B CMB HEM sing 182 n n C3B C4B HEM sing 183 n n C3B CAB HEM sing 184 n n C4B NB HEM doub 185 n n CMB HMB HEM sing 186 n n CMB HMBA HEM sing 187 n n CMB HMBB HEM sing 188 n n CAB CBB HEM doub 189 n n CAB HAB HEM sing 190 n n CBB HBB HEM sing 191 n n CBB HBBA HEM sing 192 n n C1C C2C HEM sing 193 n y C1C NC HEM sing 194 n y C2C C3C HEM doub 195 n y C2C CMC HEM sing 196 n n C3C C4C HEM sing 197 n y C3C CAC HEM sing 198 n n C4C NC HEM sing 199 n y CMC HMC HEM sing 200 n n CMC HMCA HEM sing 201 n n CMC HMCB HEM sing 202 n n CAC CBC HEM doub 203 n n CAC HAC HEM sing 204 n n CBC HBC HEM sing 205 n n CBC HBCA HEM sing 206 n n C1D C2D HEM sing 207 n n C1D ND HEM doub 208 n n C2D C3D HEM doub 209 n n C2D CMD HEM sing 210 n n C3D C4D HEM sing 211 n n C3D CAD HEM sing 212 n n C4D ND HEM sing 213 n n CMD HMD HEM sing 214 n n CMD HMDA HEM sing 215 n n CMD HMDB HEM sing 216 n n CAD CBD HEM sing 217 n n CAD HAD HEM sing 218 n n CAD HADA HEM sing 219 n n CBD CGD HEM sing 220 n n CBD HBD HEM sing 221 n n CBD HBDA HEM sing 222 n n CGD O1D HEM doub 223 n n CGD O2D HEM sing 224 n n O2A H2A HEM sing 225 n n O2D H2D HEM sing 226 n n FE NA HEM sing 227 n n FE NB HEM sing 228 n n FE NC HEM sing 229 n n FE ND HEM sing 230 n n # _atom_sites.entry_id 5E0E _atom_sites.fract_transf_matrix[1][1] 0.006908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 494 HEM HEM . C 3 CPZ A 1 502 502 CPZ CPZ . D 3 CPZ A 1 503 503 CPZ CPZ . E 3 CPZ A 1 504 504 CPZ CPZ . F 4 HOH A 1 601 35 HOH HOH . F 4 HOH A 2 602 31 HOH HOH . F 4 HOH A 3 603 8 HOH HOH . F 4 HOH A 4 604 27 HOH HOH . F 4 HOH A 5 605 13 HOH HOH . F 4 HOH A 6 606 34 HOH HOH . F 4 HOH A 7 607 9 HOH HOH . F 4 HOH A 8 608 14 HOH HOH . F 4 HOH A 9 609 25 HOH HOH . F 4 HOH A 10 610 24 HOH HOH . F 4 HOH A 11 611 36 HOH HOH . F 4 HOH A 12 612 38 HOH HOH . F 4 HOH A 13 613 37 HOH HOH . F 4 HOH A 14 614 33 HOH HOH . F 4 HOH A 15 615 22 HOH HOH . F 4 HOH A 16 616 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 15.422 21.944 16.005 1 59.31 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 13.231 21.086 11.782 1 61.49 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 17.342 20.035 9.568 1 60.83 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 19.607 20.975 13.717 1 57.78 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 14.449 21.818 15.033 1 58.85 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 13.03 21.922 15.174 1 59.24 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 12.45 21.664 13.985 1 59.18 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 13.497 21.371 13.075 1 59.31 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 10.971 21.668 13.529 1 59.47 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 12.298 22.285 16.481 1 59.41 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 12.588 23.645 17.102 1 60.48 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 11.751 23.571 18.362 1 60.82 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 12.345 23.733 19.456 1 59.04 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 10.505 23.317 18.29 1 62.45 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 14.136 20.706 10.852 1 62.24 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 13.78 20.293 9.529 1 62.17 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 14.88 19.999 8.893 1 62.95 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 15.999 20.223 9.805 1 62.32 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 12.362 20.216 8.954 1 63.35 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 14.867 19.529 7.433 1 65.49 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 14.218 20.238 6.499 1 66.91 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 18.339 20.241 10.486 1 58.03 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 19.757 20.207 10.222 1 57.01 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 20.377 20.465 11.369 1 57.15 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 19.369 20.678 12.397 1 57.88 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 20.429 19.927 8.862 1 57.04 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 21.908 20.528 11.574 1 56.35 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 22.714 20.997 10.613 1 56.63 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 18.723 21.346 14.701 1 58.06 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 19.096 21.769 16.028 1 58 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 17.812 22.075 16.762 1 58.74 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 16.774 21.808 15.802 1 59.01 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 20.511 21.907 16.616 1 58.66 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 17.721 22.548 18.214 1 60.54 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 17.382 24.021 18.286 1 62.96 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 17.425 24.483 19.721 1 64.45 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 18.413 25.16 20.107 1 65.15 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 16.476 24.183 20.482 1 64.97 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 14.716 21.43 13.714 1 58.6 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 15.497 20.662 11.006 1 61.05 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 18.134 20.534 11.817 1 58.21 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 17.35 21.383 14.605 1 59.02 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 16.441 21.104 12.695 1 58.9 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #