data_5E0K # _model_server_result.job_id zVM-zm8ZMjVmLHHZ93tOYA _model_server_result.datetime_utc '2024-11-27 18:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 5E0K # _exptl.entry_id 5E0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E0K _cell.length_a 87.862 _cell.length_b 225.014 _cell.length_c 296.241 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N,S,T,U,V 1 1 E,F,G,H,O,P,W,X,Y,Z 2 1 I,J,K,L,Q,R,AA,BA,CA,DA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C HIS 81 B HIS 81 1_555 B N LLP 82 B LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 B C LLP 82 B LLP 82 1_555 B N THR 83 B THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 D C HIS 81 D HIS 81 1_555 D N LLP 82 D LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 D C LLP 82 D LLP 82 1_555 D N THR 83 D THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 F C HIS 81 F HIS 81 1_555 F N LLP 82 F LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 F C LLP 82 F LLP 82 1_555 F N THR 83 F THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 H C HIS 81 H HIS 81 1_555 H N LLP 82 H LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 H C LLP 82 H LLP 82 1_555 H N THR 83 H THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 J C HIS 81 J HIS 81 1_555 J N LLP 82 J LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 J C LLP 82 J LLP 82 1_555 J N THR 83 J THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 L C HIS 81 L HIS 81 1_555 L N LLP 82 L LLP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 L C LLP 82 L LLP 82 1_555 L N THR 83 L THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5E0K _atom_sites.fract_transf_matrix[1][1] 0.011381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 PO4 B 1 401 3 PO4 PO4 . N 3 PO4 D 1 401 1 PO4 PO4 . O 3 PO4 F 1 401 4 PO4 PO4 . P 3 PO4 H 1 401 5 PO4 PO4 . Q 3 PO4 J 1 401 2 PO4 PO4 . R 3 PO4 L 1 401 6 PO4 PO4 . S 4 HOH A 1 301 102 HOH HOH . S 4 HOH A 2 302 51 HOH HOH . T 4 HOH B 1 501 83 HOH HOH . T 4 HOH B 2 502 41 HOH HOH . T 4 HOH B 3 503 34 HOH HOH . T 4 HOH B 4 504 25 HOH HOH . T 4 HOH B 5 505 70 HOH HOH . T 4 HOH B 6 506 50 HOH HOH . T 4 HOH B 7 507 1 HOH HOH . T 4 HOH B 8 508 84 HOH HOH . T 4 HOH B 9 509 27 HOH HOH . T 4 HOH B 10 510 99 HOH HOH . U 4 HOH C 1 301 62 HOH HOH . U 4 HOH C 2 302 57 HOH HOH . U 4 HOH C 3 303 19 HOH HOH . U 4 HOH C 4 304 97 HOH HOH . U 4 HOH C 5 305 101 HOH HOH . U 4 HOH C 6 306 52 HOH HOH . U 4 HOH C 7 307 64 HOH HOH . U 4 HOH C 8 308 23 HOH HOH . U 4 HOH C 9 309 48 HOH HOH . U 4 HOH C 10 310 66 HOH HOH . U 4 HOH C 11 311 95 HOH HOH . V 4 HOH D 1 501 82 HOH HOH . V 4 HOH D 2 502 8 HOH HOH . V 4 HOH D 3 503 20 HOH HOH . V 4 HOH D 4 504 54 HOH HOH . V 4 HOH D 5 505 81 HOH HOH . V 4 HOH D 6 506 11 HOH HOH . V 4 HOH D 7 507 87 HOH HOH . V 4 HOH D 8 508 86 HOH HOH . V 4 HOH D 9 509 67 HOH HOH . V 4 HOH D 10 510 40 HOH HOH . V 4 HOH D 11 511 14 HOH HOH . W 4 HOH E 1 301 91 HOH HOH . X 4 HOH F 1 501 90 HOH HOH . X 4 HOH F 2 502 17 HOH HOH . X 4 HOH F 3 503 37 HOH HOH . X 4 HOH F 4 504 60 HOH HOH . Y 4 HOH G 1 301 94 HOH HOH . Y 4 HOH G 2 302 32 HOH HOH . Y 4 HOH G 3 303 85 HOH HOH . Z 4 HOH H 1 501 93 HOH HOH . Z 4 HOH H 2 502 98 HOH HOH . Z 4 HOH H 3 503 59 HOH HOH . Z 4 HOH H 4 504 42 HOH HOH . Z 4 HOH H 5 505 24 HOH HOH . Z 4 HOH H 6 506 16 HOH HOH . Z 4 HOH H 7 507 26 HOH HOH . Z 4 HOH H 8 508 78 HOH HOH . Z 4 HOH H 9 509 74 HOH HOH . Z 4 HOH H 10 510 6 HOH HOH . Z 4 HOH H 11 511 72 HOH HOH . Z 4 HOH H 12 512 5 HOH HOH . AA 4 HOH I 1 301 4 HOH HOH . AA 4 HOH I 2 302 103 HOH HOH . BA 4 HOH J 1 501 92 HOH HOH . BA 4 HOH J 2 502 96 HOH HOH . BA 4 HOH J 3 503 12 HOH HOH . BA 4 HOH J 4 504 31 HOH HOH . BA 4 HOH J 5 505 89 HOH HOH . BA 4 HOH J 6 506 45 HOH HOH . BA 4 HOH J 7 507 7 HOH HOH . BA 4 HOH J 8 508 71 HOH HOH . CA 4 HOH K 1 301 28 HOH HOH . DA 4 HOH L 1 501 21 HOH HOH . DA 4 HOH L 2 502 100 HOH HOH . DA 4 HOH L 3 503 36 HOH HOH . DA 4 HOH L 4 504 30 HOH HOH . DA 4 HOH L 5 505 22 HOH HOH . DA 4 HOH L 6 506 49 HOH HOH . DA 4 HOH L 7 507 9 HOH HOH . DA 4 HOH L 8 508 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . O 3 51.562 2.918 -24.111 1 110.05 ? P PO4 401 F 1 HETATM 2 O O1 PO4 . . . O 3 52.58 3.105 -25.211 1 109 ? O1 PO4 401 F 1 HETATM 3 O O2 PO4 . . . O 3 52.263 2.479 -22.849 1 110.16 ? O2 PO4 401 F 1 HETATM 4 O O3 PO4 . . . O 3 50.56 1.858 -24.51 1 110.24 ? O3 PO4 401 F 1 HETATM 5 O O4 PO4 . . . O 3 50.854 4.229 -23.867 1 110.17 ? O4 PO4 401 F 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #