data_5E0W # _model_server_result.job_id -JbRIHZ1S9qNjZqMizfVgg _model_server_result.datetime_utc '2024-10-12 16:36:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5E0W # _exptl.entry_id 5E0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.456 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-{[(3S)-3-(4-hydroxyphenyl)cyclohexylidene]methanediyl}diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.6 _cell.angle_gamma 90 _cell.entry_id 5E0W _cell.length_a 54.493 _cell.length_b 80.228 _cell.length_c 58.173 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C25 H24 O3' _chem_comp.formula_weight 372.456 _chem_comp.id 5KE _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-{[(3S)-3-(4-hydroxyphenyl)cyclohexylidene]methanediyl}diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 5KE doub 1 n y C21 C22 5KE sing 2 n y C20 C19 5KE sing 3 n y O23 C22 5KE sing 4 n n C22 C24 5KE doub 5 n y C17 C18 5KE sing 6 n n C17 C16 5KE sing 7 n n C19 C18 5KE sing 8 n n C19 C25 5KE doub 9 n y C26 C18 5KE sing 10 n n C26 C14 5KE sing 11 n n C15 C16 5KE sing 12 n n C15 C14 5KE sing 13 n n C24 C25 5KE sing 14 n y C14 C06 5KE doub 15 n n C13 C12 5KE doub 16 n y C13 C07 5KE sing 17 n y C12 C10 5KE sing 18 n y C06 C07 5KE sing 19 n n C06 C05 5KE sing 20 n n C04 C05 5KE doub 21 n y C04 C03 5KE sing 22 n y C07 C08 5KE doub 23 n y C05 C27 5KE sing 24 n y C03 C02 5KE doub 25 n y C10 O11 5KE sing 26 n n C10 C09 5KE doub 27 n y C27 C28 5KE doub 28 n y C02 C28 5KE sing 29 n y C02 O01 5KE sing 30 n n C08 C09 5KE sing 31 n y O01 H1 5KE sing 32 n n C03 H2 5KE sing 33 n n C04 H3 5KE sing 34 n n C08 H5 5KE sing 35 n n C09 H6 5KE sing 36 n n O11 H7 5KE sing 37 n n C12 H8 5KE sing 38 n n C13 H9 5KE sing 39 n n C15 H11 5KE sing 40 n n C15 H12 5KE sing 41 n n C16 H13 5KE sing 42 n n C16 H14 5KE sing 43 n n C17 H15 5KE sing 44 n n C17 H16 5KE sing 45 n n C18 H17 5KE sing 46 n n C20 H18 5KE sing 47 n n C21 H19 5KE sing 48 n n O23 H20 5KE sing 49 n n C24 H21 5KE sing 50 n n C25 H22 5KE sing 51 n n C26 H23 5KE sing 52 n n C26 H24 5KE sing 53 n n C27 H25 5KE sing 54 n n C28 H26 5KE sing 55 n n # _atom_sites.entry_id 5E0W _atom_sites.fract_transf_matrix[1][1] 0.018351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006898 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5KE A 1 900 900 5KE UNK . F 3 5KE B 1 901 901 5KE UNK . G 4 HOH A 1 1001 151 HOH HOH . G 4 HOH A 2 1002 24 HOH HOH . G 4 HOH A 3 1003 155 HOH HOH . G 4 HOH A 4 1004 59 HOH HOH . G 4 HOH A 5 1005 191 HOH HOH . G 4 HOH A 6 1006 119 HOH HOH . G 4 HOH A 7 1007 98 HOH HOH . G 4 HOH A 8 1008 67 HOH HOH . G 4 HOH A 9 1009 47 HOH HOH . G 4 HOH A 10 1010 52 HOH HOH . G 4 HOH A 11 1011 10 HOH HOH . G 4 HOH A 12 1012 7 HOH HOH . G 4 HOH A 13 1013 133 HOH HOH . G 4 HOH A 14 1014 79 HOH HOH . G 4 HOH A 15 1015 147 HOH HOH . G 4 HOH A 16 1016 50 HOH HOH . G 4 HOH A 17 1017 77 HOH HOH . G 4 HOH A 18 1018 25 HOH HOH . G 4 HOH A 19 1019 23 HOH HOH . G 4 HOH A 20 1020 44 HOH HOH . G 4 HOH A 21 1021 137 HOH HOH . G 4 HOH A 22 1022 20 HOH HOH . G 4 HOH A 23 1023 201 HOH HOH . G 4 HOH A 24 1024 134 HOH HOH . G 4 HOH A 25 1025 54 HOH HOH . G 4 HOH A 26 1026 105 HOH HOH . G 4 HOH A 27 1027 165 HOH HOH . G 4 HOH A 28 1028 152 HOH HOH . G 4 HOH A 29 1029 96 HOH HOH . G 4 HOH A 30 1030 80 HOH HOH . G 4 HOH A 31 1031 114 HOH HOH . G 4 HOH A 32 1032 83 HOH HOH . G 4 HOH A 33 1033 18 HOH HOH . G 4 HOH A 34 1034 178 HOH HOH . G 4 HOH A 35 1035 202 HOH HOH . G 4 HOH A 36 1036 99 HOH HOH . G 4 HOH A 37 1037 171 HOH HOH . G 4 HOH A 38 1038 12 HOH HOH . G 4 HOH A 39 1039 13 HOH HOH . G 4 HOH A 40 1040 75 HOH HOH . G 4 HOH A 41 1041 38 HOH HOH . G 4 HOH A 42 1042 60 HOH HOH . G 4 HOH A 43 1043 26 HOH HOH . G 4 HOH A 44 1044 103 HOH HOH . G 4 HOH A 45 1045 162 HOH HOH . G 4 HOH A 46 1046 102 HOH HOH . G 4 HOH A 47 1047 32 HOH HOH . G 4 HOH A 48 1048 27 HOH HOH . G 4 HOH A 49 1049 53 HOH HOH . G 4 HOH A 50 1050 124 HOH HOH . G 4 HOH A 51 1051 56 HOH HOH . G 4 HOH A 52 1052 93 HOH HOH . G 4 HOH A 53 1053 108 HOH HOH . G 4 HOH A 54 1054 35 HOH HOH . G 4 HOH A 55 1055 1 HOH HOH . G 4 HOH A 56 1056 82 HOH HOH . G 4 HOH A 57 1057 34 HOH HOH . G 4 HOH A 58 1058 168 HOH HOH . G 4 HOH A 59 1059 106 HOH HOH . G 4 HOH A 60 1060 68 HOH HOH . G 4 HOH A 61 1061 138 HOH HOH . G 4 HOH A 62 1062 122 HOH HOH . G 4 HOH A 63 1063 196 HOH HOH . G 4 HOH A 64 1064 185 HOH HOH . G 4 HOH A 65 1065 73 HOH HOH . G 4 HOH A 66 1066 71 HOH HOH . G 4 HOH A 67 1067 43 HOH HOH . G 4 HOH A 68 1068 121 HOH HOH . G 4 HOH A 69 1069 127 HOH HOH . G 4 HOH A 70 1070 125 HOH HOH . G 4 HOH A 71 1071 186 HOH HOH . G 4 HOH A 72 1072 131 HOH HOH . G 4 HOH A 73 1073 143 HOH HOH . G 4 HOH A 74 1074 11 HOH HOH . G 4 HOH A 75 1075 142 HOH HOH . G 4 HOH A 76 1076 104 HOH HOH . G 4 HOH A 77 1077 158 HOH HOH . G 4 HOH A 78 1078 183 HOH HOH . G 4 HOH A 79 1079 6 HOH HOH . G 4 HOH A 80 1080 118 HOH HOH . G 4 HOH A 81 1081 203 HOH HOH . H 4 HOH B 1 1001 31 HOH HOH . H 4 HOH B 2 1002 107 HOH HOH . H 4 HOH B 3 1003 111 HOH HOH . H 4 HOH B 4 1004 8 HOH HOH . H 4 HOH B 5 1005 22 HOH HOH . H 4 HOH B 6 1006 61 HOH HOH . H 4 HOH B 7 1007 182 HOH HOH . H 4 HOH B 8 1008 150 HOH HOH . H 4 HOH B 9 1009 190 HOH HOH . H 4 HOH B 10 1010 81 HOH HOH . H 4 HOH B 11 1011 69 HOH HOH . H 4 HOH B 12 1012 192 HOH HOH . H 4 HOH B 13 1013 84 HOH HOH . H 4 HOH B 14 1014 179 HOH HOH . H 4 HOH B 15 1015 110 HOH HOH . H 4 HOH B 16 1016 46 HOH HOH . H 4 HOH B 17 1017 94 HOH HOH . H 4 HOH B 18 1018 132 HOH HOH . H 4 HOH B 19 1019 51 HOH HOH . H 4 HOH B 20 1020 117 HOH HOH . H 4 HOH B 21 1021 140 HOH HOH . H 4 HOH B 22 1022 45 HOH HOH . H 4 HOH B 23 1023 85 HOH HOH . H 4 HOH B 24 1024 5 HOH HOH . H 4 HOH B 25 1025 101 HOH HOH . H 4 HOH B 26 1026 170 HOH HOH . H 4 HOH B 27 1027 160 HOH HOH . H 4 HOH B 28 1028 42 HOH HOH . H 4 HOH B 29 1029 15 HOH HOH . H 4 HOH B 30 1030 115 HOH HOH . H 4 HOH B 31 1031 57 HOH HOH . H 4 HOH B 32 1032 87 HOH HOH . H 4 HOH B 33 1033 14 HOH HOH . H 4 HOH B 34 1034 167 HOH HOH . H 4 HOH B 35 1035 130 HOH HOH . H 4 HOH B 36 1036 72 HOH HOH . H 4 HOH B 37 1037 39 HOH HOH . H 4 HOH B 38 1038 2 HOH HOH . H 4 HOH B 39 1039 198 HOH HOH . H 4 HOH B 40 1040 97 HOH HOH . H 4 HOH B 41 1041 30 HOH HOH . H 4 HOH B 42 1042 9 HOH HOH . H 4 HOH B 43 1043 58 HOH HOH . H 4 HOH B 44 1044 177 HOH HOH . H 4 HOH B 45 1045 175 HOH HOH . H 4 HOH B 46 1046 36 HOH HOH . H 4 HOH B 47 1047 40 HOH HOH . H 4 HOH B 48 1048 89 HOH HOH . H 4 HOH B 49 1049 3 HOH HOH . H 4 HOH B 50 1050 92 HOH HOH . H 4 HOH B 51 1051 159 HOH HOH . H 4 HOH B 52 1052 62 HOH HOH . H 4 HOH B 53 1053 128 HOH HOH . H 4 HOH B 54 1054 29 HOH HOH . H 4 HOH B 55 1055 109 HOH HOH . H 4 HOH B 56 1056 166 HOH HOH . H 4 HOH B 57 1057 66 HOH HOH . H 4 HOH B 58 1058 163 HOH HOH . H 4 HOH B 59 1059 197 HOH HOH . H 4 HOH B 60 1060 112 HOH HOH . H 4 HOH B 61 1061 33 HOH HOH . H 4 HOH B 62 1062 17 HOH HOH . H 4 HOH B 63 1063 129 HOH HOH . H 4 HOH B 64 1064 21 HOH HOH . H 4 HOH B 65 1065 120 HOH HOH . H 4 HOH B 66 1066 41 HOH HOH . H 4 HOH B 67 1067 141 HOH HOH . H 4 HOH B 68 1068 37 HOH HOH . H 4 HOH B 69 1069 95 HOH HOH . H 4 HOH B 70 1070 63 HOH HOH . H 4 HOH B 71 1071 28 HOH HOH . H 4 HOH B 72 1072 184 HOH HOH . H 4 HOH B 73 1073 153 HOH HOH . H 4 HOH B 74 1074 55 HOH HOH . H 4 HOH B 75 1075 113 HOH HOH . H 4 HOH B 76 1076 48 HOH HOH . H 4 HOH B 77 1077 157 HOH HOH . H 4 HOH B 78 1078 193 HOH HOH . H 4 HOH B 79 1079 188 HOH HOH . H 4 HOH B 80 1080 126 HOH HOH . H 4 HOH B 81 1081 156 HOH HOH . H 4 HOH B 82 1082 199 HOH HOH . H 4 HOH B 83 1083 161 HOH HOH . H 4 HOH B 84 1084 65 HOH HOH . H 4 HOH B 85 1085 187 HOH HOH . H 4 HOH B 86 1086 154 HOH HOH . H 4 HOH B 87 1087 91 HOH HOH . H 4 HOH B 88 1088 164 HOH HOH . H 4 HOH B 89 1089 180 HOH HOH . H 4 HOH B 90 1090 200 HOH HOH . H 4 HOH B 91 1091 49 HOH HOH . H 4 HOH B 92 1092 181 HOH HOH . H 4 HOH B 93 1093 172 HOH HOH . H 4 HOH B 94 1094 88 HOH HOH . H 4 HOH B 95 1095 76 HOH HOH . H 4 HOH B 96 1096 74 HOH HOH . H 4 HOH B 97 1097 90 HOH HOH . H 4 HOH B 98 1098 174 HOH HOH . H 4 HOH B 99 1099 78 HOH HOH . H 4 HOH B 100 1100 86 HOH HOH . H 4 HOH B 101 1101 149 HOH HOH . H 4 HOH B 102 1102 169 HOH HOH . H 4 HOH B 103 1103 136 HOH HOH . H 4 HOH B 104 1104 148 HOH HOH . H 4 HOH B 105 1105 135 HOH HOH . H 4 HOH B 106 1106 144 HOH HOH . H 4 HOH B 107 1107 19 HOH HOH . H 4 HOH B 108 1108 146 HOH HOH . H 4 HOH B 109 1109 195 HOH HOH . H 4 HOH B 110 1110 4 HOH HOH . H 4 HOH B 111 1111 189 HOH HOH . H 4 HOH B 112 1112 70 HOH HOH . H 4 HOH B 113 1113 145 HOH HOH . H 4 HOH B 114 1114 173 HOH HOH . H 4 HOH B 115 1115 16 HOH HOH . H 4 HOH B 116 1116 116 HOH HOH . H 4 HOH B 117 1117 139 HOH HOH . H 4 HOH B 118 1118 176 HOH HOH . I 4 HOH C 1 701 123 HOH HOH . J 4 HOH D 1 701 194 HOH HOH . J 4 HOH D 2 702 64 HOH HOH . J 4 HOH D 3 703 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5KE . . . E 3 -3.096 17.106 8.158 1 37.03 ? O01 5KE 900 A 1 HETATM 2 C C02 5KE . . . E 3 -3.686 18.19 7.626 1 36.35 ? C02 5KE 900 A 1 HETATM 3 C C03 5KE . . . E 3 -4.821 18.056 6.856 1 34.65 ? C03 5KE 900 A 1 HETATM 4 C C04 5KE . . . E 3 -5.438 19.159 6.316 1 33.38 ? C04 5KE 900 A 1 HETATM 5 C C05 5KE . . . E 3 -4.912 20.409 6.55 1 33.82 ? C05 5KE 900 A 1 HETATM 6 C C06 5KE . . . E 3 -5.568 21.617 5.973 1 33.85 ? C06 5KE 900 A 1 HETATM 7 C C07 5KE . . . E 3 -7.005 21.881 6.364 1 32.68 ? C07 5KE 900 A 1 HETATM 8 C C08 5KE . . . E 3 -7.359 21.751 7.685 1 31.43 ? C08 5KE 900 A 1 HETATM 9 C C09 5KE . . . E 3 -8.654 21.962 8.077 1 29.46 ? C09 5KE 900 A 1 HETATM 10 C C10 5KE . . . E 3 -9.598 22.321 7.154 1 28.99 ? C10 5KE 900 A 1 HETATM 11 O O11 5KE . . . E 3 -10.867 22.531 7.565 1 28.13 ? O11 5KE 900 A 1 HETATM 12 C C12 5KE . . . E 3 -9.238 22.449 5.827 1 30.43 ? C12 5KE 900 A 1 HETATM 13 C C13 5KE . . . E 3 -7.946 22.226 5.431 1 31.03 ? C13 5KE 900 A 1 HETATM 14 C C14 5KE . . . E 3 -4.895 22.426 5.045 1 36.92 ? C14 5KE 900 A 1 HETATM 15 C C15 5KE . . . E 3 -5.318 23.794 4.623 1 37.79 ? C15 5KE 900 A 1 HETATM 16 C C16 5KE . . . E 3 -4.24 24.812 4.727 1 38.28 ? C16 5KE 900 A 1 HETATM 17 C C17 5KE . . . E 3 -2.936 24.371 4.152 1 39.33 ? C17 5KE 900 A 1 HETATM 18 C C18 5KE . . . E 3 -2.5 23.01 4.575 1 40.37 ? C18 5KE 900 A 1 HETATM 19 C C19 5KE . . . E 3 -1.041 22.789 4.194 1 44.39 ? C19 5KE 900 A 1 HETATM 20 C C20 5KE . . . E 3 -0.669 22.733 2.881 1 47.1 ? C20 5KE 900 A 1 HETATM 21 C C21 5KE . . . E 3 0.678 22.507 2.541 1 48.59 ? C21 5KE 900 A 1 HETATM 22 C C22 5KE . . . E 3 1.624 22.299 3.531 1 50.92 ? C22 5KE 900 A 1 HETATM 23 O O23 5KE . . . E 3 2.926 22.048 3.227 1 55.36 ? O23 5KE 900 A 1 HETATM 24 C C24 5KE . . . E 3 1.232 22.32 4.838 1 48.57 ? C24 5KE 900 A 1 HETATM 25 C C25 5KE . . . E 3 -0.091 22.558 5.164 1 46.44 ? C25 5KE 900 A 1 HETATM 26 C C26 5KE . . . E 3 -3.592 21.993 4.522 1 37.41 ? C26 5KE 900 A 1 HETATM 27 C C27 5KE . . . E 3 -3.787 20.541 7.311 1 34.68 ? C27 5KE 900 A 1 HETATM 28 C C28 5KE . . . E 3 -3.161 19.431 7.849 1 35.92 ? C28 5KE 900 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #