data_5E0X # _model_server_result.job_id efc9fM63A7P2CBnCujXTjA _model_server_result.datetime_utc '2024-10-12 14:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5E0X # _exptl.entry_id 5E0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.483 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-{[(3S)-3-(4-methoxyphenyl)cyclohexylidene]methanediyl}diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.86 _cell.angle_gamma 90 _cell.entry_id 5E0X _cell.length_a 55.08 _cell.length_b 81.88 _cell.length_c 58.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H26 O3' _chem_comp.formula_weight 386.483 _chem_comp.id 5KD _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-{[(3S)-3-(4-methoxyphenyl)cyclohexylidene]methanediyl}diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C08 5KD doub 1 n y C09 C10 5KD sing 2 n y C03 C04 5KD doub 3 n y C03 C02 5KD sing 4 n y O11 C10 5KD sing 5 n n C08 C07 5KD sing 6 n y O01 C02 5KD sing 7 n n C04 C05 5KD sing 8 n y C10 C12 5KD doub 9 n y C02 C29 5KD doub 10 n y C07 C06 5KD sing 11 n n C07 C13 5KD doub 12 n y C05 C28 5KD doub 13 n y C05 C06 5KD sing 14 n n C29 C28 5KD sing 15 n y C12 C13 5KD sing 16 n y C06 C14 5KD doub 17 n n C26 C25 5KD doub 18 n y C26 C19 5KD sing 19 n y C15 C14 5KD sing 20 n n C15 C16 5KD sing 21 n n C14 C27 5KD sing 22 n n C17 C18 5KD sing 23 n n C17 C16 5KD sing 24 n n C25 C22 5KD sing 25 n y C18 C27 5KD sing 26 n n C18 C19 5KD sing 27 n n C19 C20 5KD doub 28 n y C24 O23 5KD sing 29 n n C22 O23 5KD sing 30 n n C22 C21 5KD doub 31 n y C20 C21 5KD sing 32 n y O01 H1 5KD sing 33 n n C03 H2 5KD sing 34 n n C04 H3 5KD sing 35 n n C08 H5 5KD sing 36 n n C09 H6 5KD sing 37 n n O11 H7 5KD sing 38 n n C12 H8 5KD sing 39 n n C13 H9 5KD sing 40 n n C15 H11 5KD sing 41 n n C15 H12 5KD sing 42 n n C16 H13 5KD sing 43 n n C16 H14 5KD sing 44 n n C17 H15 5KD sing 45 n n C17 H16 5KD sing 46 n n C18 H17 5KD sing 47 n n C20 H18 5KD sing 48 n n C21 H19 5KD sing 49 n n C24 H20 5KD sing 50 n n C24 H21 5KD sing 51 n n C24 H22 5KD sing 52 n n C25 H23 5KD sing 53 n n C26 H24 5KD sing 54 n n C27 H25 5KD sing 55 n n C27 H26 5KD sing 56 n n C28 H27 5KD sing 57 n n C29 H28 5KD sing 58 n n # _atom_sites.entry_id 5E0X _atom_sites.fract_transf_matrix[1][1] 0.018155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006918 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5KD A 1 900 900 5KD UNK . F 3 5KD B 1 901 901 5KD UNK . G 4 HOH A 1 1001 54 HOH HOH . G 4 HOH A 2 1002 72 HOH HOH . G 4 HOH A 3 1003 117 HOH HOH . G 4 HOH A 4 1004 176 HOH HOH . G 4 HOH A 5 1005 77 HOH HOH . G 4 HOH A 6 1006 33 HOH HOH . G 4 HOH A 7 1007 170 HOH HOH . G 4 HOH A 8 1008 158 HOH HOH . G 4 HOH A 9 1009 187 HOH HOH . G 4 HOH A 10 1010 161 HOH HOH . G 4 HOH A 11 1011 217 HOH HOH . G 4 HOH A 12 1012 52 HOH HOH . G 4 HOH A 13 1013 66 HOH HOH . G 4 HOH A 14 1014 101 HOH HOH . G 4 HOH A 15 1015 119 HOH HOH . G 4 HOH A 16 1016 6 HOH HOH . G 4 HOH A 17 1017 25 HOH HOH . G 4 HOH A 18 1018 24 HOH HOH . G 4 HOH A 19 1019 41 HOH HOH . G 4 HOH A 20 1020 173 HOH HOH . G 4 HOH A 21 1021 128 HOH HOH . G 4 HOH A 22 1022 186 HOH HOH . G 4 HOH A 23 1023 157 HOH HOH . G 4 HOH A 24 1024 67 HOH HOH . G 4 HOH A 25 1025 47 HOH HOH . G 4 HOH A 26 1026 120 HOH HOH . G 4 HOH A 27 1027 192 HOH HOH . G 4 HOH A 28 1028 160 HOH HOH . G 4 HOH A 29 1029 191 HOH HOH . G 4 HOH A 30 1030 15 HOH HOH . G 4 HOH A 31 1031 91 HOH HOH . G 4 HOH A 32 1032 60 HOH HOH . G 4 HOH A 33 1033 75 HOH HOH . G 4 HOH A 34 1034 11 HOH HOH . G 4 HOH A 35 1035 58 HOH HOH . G 4 HOH A 36 1036 65 HOH HOH . G 4 HOH A 37 1037 163 HOH HOH . G 4 HOH A 38 1038 36 HOH HOH . G 4 HOH A 39 1039 124 HOH HOH . G 4 HOH A 40 1040 12 HOH HOH . G 4 HOH A 41 1041 210 HOH HOH . G 4 HOH A 42 1042 180 HOH HOH . G 4 HOH A 43 1043 63 HOH HOH . G 4 HOH A 44 1044 5 HOH HOH . G 4 HOH A 45 1045 221 HOH HOH . G 4 HOH A 46 1046 80 HOH HOH . G 4 HOH A 47 1047 37 HOH HOH . G 4 HOH A 48 1048 165 HOH HOH . G 4 HOH A 49 1049 8 HOH HOH . G 4 HOH A 50 1050 21 HOH HOH . G 4 HOH A 51 1051 71 HOH HOH . G 4 HOH A 52 1052 129 HOH HOH . G 4 HOH A 53 1053 1 HOH HOH . G 4 HOH A 54 1054 188 HOH HOH . G 4 HOH A 55 1055 162 HOH HOH . G 4 HOH A 56 1056 139 HOH HOH . G 4 HOH A 57 1057 174 HOH HOH . G 4 HOH A 58 1058 64 HOH HOH . G 4 HOH A 59 1059 134 HOH HOH . G 4 HOH A 60 1060 116 HOH HOH . G 4 HOH A 61 1061 133 HOH HOH . G 4 HOH A 62 1062 49 HOH HOH . G 4 HOH A 63 1063 104 HOH HOH . G 4 HOH A 64 1064 83 HOH HOH . G 4 HOH A 65 1065 222 HOH HOH . G 4 HOH A 66 1066 7 HOH HOH . G 4 HOH A 67 1067 27 HOH HOH . G 4 HOH A 68 1068 179 HOH HOH . G 4 HOH A 69 1069 20 HOH HOH . G 4 HOH A 70 1070 61 HOH HOH . G 4 HOH A 71 1071 226 HOH HOH . G 4 HOH A 72 1072 48 HOH HOH . G 4 HOH A 73 1073 177 HOH HOH . G 4 HOH A 74 1074 56 HOH HOH . G 4 HOH A 75 1075 125 HOH HOH . G 4 HOH A 76 1076 137 HOH HOH . G 4 HOH A 77 1077 153 HOH HOH . G 4 HOH A 78 1078 89 HOH HOH . G 4 HOH A 79 1079 198 HOH HOH . G 4 HOH A 80 1080 148 HOH HOH . G 4 HOH A 81 1081 149 HOH HOH . G 4 HOH A 82 1082 108 HOH HOH . G 4 HOH A 83 1083 98 HOH HOH . G 4 HOH A 84 1084 183 HOH HOH . G 4 HOH A 85 1085 184 HOH HOH . G 4 HOH A 86 1086 95 HOH HOH . G 4 HOH A 87 1087 110 HOH HOH . G 4 HOH A 88 1088 168 HOH HOH . G 4 HOH A 89 1089 126 HOH HOH . G 4 HOH A 90 1090 43 HOH HOH . G 4 HOH A 91 1091 103 HOH HOH . G 4 HOH A 92 1092 181 HOH HOH . G 4 HOH A 93 1093 151 HOH HOH . G 4 HOH A 94 1094 219 HOH HOH . G 4 HOH A 95 1095 94 HOH HOH . G 4 HOH A 96 1096 141 HOH HOH . G 4 HOH A 97 1097 196 HOH HOH . G 4 HOH A 98 1098 193 HOH HOH . G 4 HOH A 99 1099 203 HOH HOH . G 4 HOH A 100 1100 206 HOH HOH . G 4 HOH A 101 1101 225 HOH HOH . G 4 HOH A 102 1102 19 HOH HOH . G 4 HOH A 103 1103 178 HOH HOH . G 4 HOH A 104 1104 200 HOH HOH . G 4 HOH A 105 1105 105 HOH HOH . G 4 HOH A 106 1106 155 HOH HOH . G 4 HOH A 107 1107 182 HOH HOH . G 4 HOH A 108 1108 194 HOH HOH . G 4 HOH A 109 1109 79 HOH HOH . H 4 HOH B 1 1001 32 HOH HOH . H 4 HOH B 2 1002 145 HOH HOH . H 4 HOH B 3 1003 115 HOH HOH . H 4 HOH B 4 1004 106 HOH HOH . H 4 HOH B 5 1005 136 HOH HOH . H 4 HOH B 6 1006 166 HOH HOH . H 4 HOH B 7 1007 59 HOH HOH . H 4 HOH B 8 1008 118 HOH HOH . H 4 HOH B 9 1009 142 HOH HOH . H 4 HOH B 10 1010 140 HOH HOH . H 4 HOH B 11 1011 78 HOH HOH . H 4 HOH B 12 1012 154 HOH HOH . H 4 HOH B 13 1013 13 HOH HOH . H 4 HOH B 14 1014 16 HOH HOH . H 4 HOH B 15 1015 40 HOH HOH . H 4 HOH B 16 1016 205 HOH HOH . H 4 HOH B 17 1017 81 HOH HOH . H 4 HOH B 18 1018 82 HOH HOH . H 4 HOH B 19 1019 4 HOH HOH . H 4 HOH B 20 1020 109 HOH HOH . H 4 HOH B 21 1021 23 HOH HOH . H 4 HOH B 22 1022 29 HOH HOH . H 4 HOH B 23 1023 73 HOH HOH . H 4 HOH B 24 1024 31 HOH HOH . H 4 HOH B 25 1025 185 HOH HOH . H 4 HOH B 26 1026 17 HOH HOH . H 4 HOH B 27 1027 68 HOH HOH . H 4 HOH B 28 1028 90 HOH HOH . H 4 HOH B 29 1029 122 HOH HOH . H 4 HOH B 30 1030 42 HOH HOH . H 4 HOH B 31 1031 39 HOH HOH . H 4 HOH B 32 1032 45 HOH HOH . H 4 HOH B 33 1033 50 HOH HOH . H 4 HOH B 34 1034 30 HOH HOH . H 4 HOH B 35 1035 147 HOH HOH . H 4 HOH B 36 1036 146 HOH HOH . H 4 HOH B 37 1037 143 HOH HOH . H 4 HOH B 38 1038 3 HOH HOH . H 4 HOH B 39 1039 9 HOH HOH . H 4 HOH B 40 1040 35 HOH HOH . H 4 HOH B 41 1041 2 HOH HOH . H 4 HOH B 42 1042 97 HOH HOH . H 4 HOH B 43 1043 57 HOH HOH . H 4 HOH B 44 1044 22 HOH HOH . H 4 HOH B 45 1045 14 HOH HOH . H 4 HOH B 46 1046 132 HOH HOH . H 4 HOH B 47 1047 18 HOH HOH . H 4 HOH B 48 1048 62 HOH HOH . H 4 HOH B 49 1049 107 HOH HOH . H 4 HOH B 50 1050 86 HOH HOH . H 4 HOH B 51 1051 99 HOH HOH . H 4 HOH B 52 1052 44 HOH HOH . H 4 HOH B 53 1053 69 HOH HOH . H 4 HOH B 54 1054 213 HOH HOH . H 4 HOH B 55 1055 121 HOH HOH . H 4 HOH B 56 1056 34 HOH HOH . H 4 HOH B 57 1057 26 HOH HOH . H 4 HOH B 58 1058 223 HOH HOH . H 4 HOH B 59 1059 53 HOH HOH . H 4 HOH B 60 1060 114 HOH HOH . H 4 HOH B 61 1061 46 HOH HOH . H 4 HOH B 62 1062 51 HOH HOH . H 4 HOH B 63 1063 135 HOH HOH . H 4 HOH B 64 1064 201 HOH HOH . H 4 HOH B 65 1065 220 HOH HOH . H 4 HOH B 66 1066 70 HOH HOH . H 4 HOH B 67 1067 123 HOH HOH . H 4 HOH B 68 1068 93 HOH HOH . H 4 HOH B 69 1069 208 HOH HOH . H 4 HOH B 70 1070 138 HOH HOH . H 4 HOH B 71 1071 175 HOH HOH . H 4 HOH B 72 1072 96 HOH HOH . H 4 HOH B 73 1073 127 HOH HOH . H 4 HOH B 74 1074 84 HOH HOH . H 4 HOH B 75 1075 144 HOH HOH . H 4 HOH B 76 1076 150 HOH HOH . H 4 HOH B 77 1077 199 HOH HOH . H 4 HOH B 78 1078 130 HOH HOH . H 4 HOH B 79 1079 111 HOH HOH . H 4 HOH B 80 1080 28 HOH HOH . H 4 HOH B 81 1081 55 HOH HOH . H 4 HOH B 82 1082 85 HOH HOH . H 4 HOH B 83 1083 202 HOH HOH . H 4 HOH B 84 1084 38 HOH HOH . H 4 HOH B 85 1085 171 HOH HOH . H 4 HOH B 86 1086 102 HOH HOH . H 4 HOH B 87 1087 215 HOH HOH . H 4 HOH B 88 1088 209 HOH HOH . H 4 HOH B 89 1089 76 HOH HOH . H 4 HOH B 90 1090 167 HOH HOH . H 4 HOH B 91 1091 211 HOH HOH . H 4 HOH B 92 1092 88 HOH HOH . H 4 HOH B 93 1093 190 HOH HOH . H 4 HOH B 94 1094 156 HOH HOH . H 4 HOH B 95 1095 212 HOH HOH . H 4 HOH B 96 1096 197 HOH HOH . H 4 HOH B 97 1097 159 HOH HOH . H 4 HOH B 98 1098 207 HOH HOH . H 4 HOH B 99 1099 113 HOH HOH . H 4 HOH B 100 1100 214 HOH HOH . H 4 HOH B 101 1101 92 HOH HOH . H 4 HOH B 102 1102 112 HOH HOH . H 4 HOH B 103 1103 195 HOH HOH . H 4 HOH B 104 1104 204 HOH HOH . H 4 HOH B 105 1105 152 HOH HOH . H 4 HOH B 106 1106 87 HOH HOH . H 4 HOH B 107 1107 224 HOH HOH . H 4 HOH B 108 1108 172 HOH HOH . H 4 HOH B 109 1109 10 HOH HOH . H 4 HOH B 110 1110 100 HOH HOH . H 4 HOH B 111 1111 164 HOH HOH . H 4 HOH B 112 1112 216 HOH HOH . H 4 HOH B 113 1113 131 HOH HOH . H 4 HOH B 114 1114 218 HOH HOH . I 4 HOH C 1 701 189 HOH HOH . J 4 HOH D 1 701 74 HOH HOH . J 4 HOH D 2 702 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5KD . . . E 3 -6.668 -0.173 20.038 1 35.34 ? O01 5KD 900 A 1 HETATM 2 C C02 5KD . . . E 3 -6.053 1.003 20.485 1 30.22 ? C02 5KD 900 A 1 HETATM 3 C C03 5KD . . . E 3 -6.481 2.25 19.989 1 28.1 ? C03 5KD 900 A 1 HETATM 4 C C04 5KD . . . E 3 -5.856 3.434 20.437 1 30.13 ? C04 5KD 900 A 1 HETATM 5 C C05 5KD . . . E 3 -4.816 3.361 21.383 1 26.74 ? C05 5KD 900 A 1 HETATM 6 C C06 5KD . . . E 3 -4.127 4.624 21.889 1 29.3 ? C06 5KD 900 A 1 HETATM 7 C C07 5KD . . . E 3 -2.713 4.926 21.378 1 27.98 ? C07 5KD 900 A 1 HETATM 8 C C08 5KD . . . E 3 -2.44 4.969 20.002 1 29.53 ? C08 5KD 900 A 1 HETATM 9 C C09 5KD . . . E 3 -1.135 5.238 19.545 1 28.09 ? C09 5KD 900 A 1 HETATM 10 C C10 5KD . . . E 3 -0.098 5.458 20.453 1 26.47 ? C10 5KD 900 A 1 HETATM 11 O O11 5KD . . . E 3 1.196 5.724 19.989 1 30.07 ? O11 5KD 900 A 1 HETATM 12 C C12 5KD . . . E 3 -0.368 5.413 21.826 1 24.06 ? C12 5KD 900 A 1 HETATM 13 C C13 5KD . . . E 3 -1.671 5.142 22.282 1 25.63 ? C13 5KD 900 A 1 HETATM 14 C C14 5KD . . . E 3 -4.774 5.415 22.842 1 31.99 ? C14 5KD 900 A 1 HETATM 15 C C15 5KD . . . E 3 -4.608 6.89 22.744 1 32.55 ? C15 5KD 900 A 1 HETATM 16 C C16 5KD . . . E 3 -5.691 7.678 23.43 1 33.39 ? C16 5KD 900 A 1 HETATM 17 C C17 5KD . . . E 3 -7.041 7.244 22.901 1 33.94 ? C17 5KD 900 A 1 HETATM 18 C C18 5KD . . . E 3 -7.307 5.778 23.057 1 34.64 ? C18 5KD 900 A 1 HETATM 19 C C19 5KD . . . E 3 -8.757 5.635 23.497 1 39.74 ? C19 5KD 900 A 1 HETATM 20 C C20 5KD . . . E 3 -9.072 5.711 24.852 1 41.3 ? C20 5KD 900 A 1 HETATM 21 C C21 5KD . . . E 3 -10.414 5.588 25.275 1 43.32 ? C21 5KD 900 A 1 HETATM 22 C C22 5KD . . . E 3 -11.436 5.393 24.337 1 44.77 ? C22 5KD 900 A 1 HETATM 23 O O23 5KD . . . E 3 -12.774 5.277 24.746 1 45.75 ? O23 5KD 900 A 1 HETATM 24 C C24 5KD . . . E 3 -13.715 4.618 23.922 1 44.99 ? C24 5KD 900 A 1 HETATM 25 C C25 5KD . . . E 3 -11.114 5.323 22.975 1 45.6 ? C25 5KD 900 A 1 HETATM 26 C C26 5KD . . . E 3 -9.777 5.442 22.552 1 42.91 ? C26 5KD 900 A 1 HETATM 27 C C27 5KD . . . E 3 -6.089 4.959 23.393 1 32.56 ? C27 5KD 900 A 1 HETATM 28 C C28 5KD . . . E 3 -4.394 2.112 21.877 1 23.54 ? C28 5KD 900 A 1 HETATM 29 C C29 5KD . . . E 3 -5.012 0.934 21.424 1 26.94 ? C29 5KD 900 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #