data_5E16 # _model_server_result.job_id N-UqRVCe4_SFsKzPSnUOhg _model_server_result.datetime_utc '2024-11-01 05:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5E16 # _exptl.entry_id 5E16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E16 _cell.length_a 51.266 _cell.length_b 53.847 _cell.length_c 92.351 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 5E16 _atom_sites.fract_transf_matrix[1][1] 0.019506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCG A 1 601 601 PCG PCG . C 3 HOH A 1 701 174 HOH HOH . C 3 HOH A 2 702 244 HOH HOH . C 3 HOH A 3 703 90 HOH HOH . C 3 HOH A 4 704 66 HOH HOH . C 3 HOH A 5 705 69 HOH HOH . C 3 HOH A 6 706 226 HOH HOH . C 3 HOH A 7 707 36 HOH HOH . C 3 HOH A 8 708 243 HOH HOH . C 3 HOH A 9 709 67 HOH HOH . C 3 HOH A 10 710 64 HOH HOH . C 3 HOH A 11 711 100 HOH HOH . C 3 HOH A 12 712 237 HOH HOH . C 3 HOH A 13 713 118 HOH HOH . C 3 HOH A 14 714 13 HOH HOH . C 3 HOH A 15 715 224 HOH HOH . C 3 HOH A 16 716 30 HOH HOH . C 3 HOH A 17 717 150 HOH HOH . C 3 HOH A 18 718 32 HOH HOH . C 3 HOH A 19 719 15 HOH HOH . C 3 HOH A 20 720 111 HOH HOH . C 3 HOH A 21 721 25 HOH HOH . C 3 HOH A 22 722 241 HOH HOH . C 3 HOH A 23 723 18 HOH HOH . C 3 HOH A 24 724 221 HOH HOH . C 3 HOH A 25 725 50 HOH HOH . C 3 HOH A 26 726 94 HOH HOH . C 3 HOH A 27 727 21 HOH HOH . C 3 HOH A 28 728 76 HOH HOH . C 3 HOH A 29 729 238 HOH HOH . C 3 HOH A 30 730 116 HOH HOH . C 3 HOH A 31 731 229 HOH HOH . C 3 HOH A 32 732 83 HOH HOH . C 3 HOH A 33 733 136 HOH HOH . C 3 HOH A 34 734 131 HOH HOH . C 3 HOH A 35 735 239 HOH HOH . C 3 HOH A 36 736 234 HOH HOH . C 3 HOH A 37 737 47 HOH HOH . C 3 HOH A 38 738 232 HOH HOH . C 3 HOH A 39 739 10 HOH HOH . C 3 HOH A 40 740 44 HOH HOH . C 3 HOH A 41 741 7 HOH HOH . C 3 HOH A 42 742 11 HOH HOH . C 3 HOH A 43 743 128 HOH HOH . C 3 HOH A 44 744 92 HOH HOH . C 3 HOH A 45 745 119 HOH HOH . C 3 HOH A 46 746 78 HOH HOH . C 3 HOH A 47 747 35 HOH HOH . C 3 HOH A 48 748 58 HOH HOH . C 3 HOH A 49 749 16 HOH HOH . C 3 HOH A 50 750 26 HOH HOH . C 3 HOH A 51 751 222 HOH HOH . C 3 HOH A 52 752 141 HOH HOH . C 3 HOH A 53 753 89 HOH HOH . C 3 HOH A 54 754 247 HOH HOH . C 3 HOH A 55 755 242 HOH HOH . C 3 HOH A 56 756 28 HOH HOH . C 3 HOH A 57 757 96 HOH HOH . C 3 HOH A 58 758 104 HOH HOH . C 3 HOH A 59 759 82 HOH HOH . C 3 HOH A 60 760 20 HOH HOH . C 3 HOH A 61 761 37 HOH HOH . C 3 HOH A 62 762 81 HOH HOH . C 3 HOH A 63 763 223 HOH HOH . C 3 HOH A 64 764 233 HOH HOH . C 3 HOH A 65 765 24 HOH HOH . C 3 HOH A 66 766 208 HOH HOH . C 3 HOH A 67 767 12 HOH HOH . C 3 HOH A 68 768 236 HOH HOH . C 3 HOH A 69 769 8 HOH HOH . C 3 HOH A 70 770 34 HOH HOH . C 3 HOH A 71 771 77 HOH HOH . C 3 HOH A 72 772 93 HOH HOH . C 3 HOH A 73 773 107 HOH HOH . C 3 HOH A 74 774 133 HOH HOH . C 3 HOH A 75 775 17 HOH HOH . C 3 HOH A 76 776 106 HOH HOH . C 3 HOH A 77 777 230 HOH HOH . C 3 HOH A 78 778 245 HOH HOH . C 3 HOH A 79 779 209 HOH HOH . C 3 HOH A 80 780 5 HOH HOH . C 3 HOH A 81 781 227 HOH HOH . C 3 HOH A 82 782 235 HOH HOH . C 3 HOH A 83 783 132 HOH HOH . C 3 HOH A 84 784 51 HOH HOH . C 3 HOH A 85 785 62 HOH HOH . C 3 HOH A 86 786 71 HOH HOH . C 3 HOH A 87 787 55 HOH HOH . C 3 HOH A 88 788 91 HOH HOH . C 3 HOH A 89 789 219 HOH HOH . C 3 HOH A 90 790 240 HOH HOH . C 3 HOH A 91 791 217 HOH HOH . C 3 HOH A 92 792 60 HOH HOH . C 3 HOH A 93 793 54 HOH HOH . C 3 HOH A 94 794 27 HOH HOH . C 3 HOH A 95 795 220 HOH HOH . C 3 HOH A 96 796 200 HOH HOH . C 3 HOH A 97 797 228 HOH HOH . C 3 HOH A 98 798 72 HOH HOH . C 3 HOH A 99 799 212 HOH HOH . C 3 HOH A 100 800 199 HOH HOH . C 3 HOH A 101 801 84 HOH HOH . C 3 HOH A 102 802 75 HOH HOH . C 3 HOH A 103 803 59 HOH HOH . C 3 HOH A 104 804 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . B 2 22.135 6.249 7.315 1 19.78 ? PA PCG 601 A 1 HETATM 2 O O1A PCG . . . B 2 23.109 5.803 8.393 1 19.23 ? O1A PCG 601 A 1 HETATM 3 O O2A PCG . . . B 2 22.495 7.458 6.456 1 20.6 ? O2A PCG 601 A 1 HETATM 4 O O5' PCG . . . B 2 20.692 6.465 7.989 1 19.23 ? O5' PCG 601 A 1 HETATM 5 C C5' PCG . . . B 2 19.52 6.462 7.154 1 18.75 ? C5' PCG 601 A 1 HETATM 6 C C4' PCG . . . B 2 19.532 5.156 6.382 1 19.18 ? C4' PCG 601 A 1 HETATM 7 O O4' PCG . . . B 2 18.483 4.978 5.449 1 20.22 ? O4' PCG 601 A 1 HETATM 8 C C3' PCG . . . B 2 20.779 5.069 5.527 1 19.13 ? C3' PCG 601 A 1 HETATM 9 O O3' PCG . . . B 2 21.928 5.035 6.366 1 19 ? O3' PCG 601 A 1 HETATM 10 C C2' PCG . . . B 2 20.455 3.841 4.707 1 18.8 ? C2' PCG 601 A 1 HETATM 11 O O2' PCG . . . B 2 20.805 2.676 5.421 1 18.04 ? O2' PCG 601 A 1 HETATM 12 C C1' PCG . . . B 2 18.931 3.921 4.613 1 19.18 ? C1' PCG 601 A 1 HETATM 13 N N9 PCG . . . B 2 18.44 4.174 3.251 1 18.3 ? N9 PCG 601 A 1 HETATM 14 C C8 PCG . . . B 2 17.603 3.385 2.573 1 18.66 ? C8 PCG 601 A 1 HETATM 15 N N7 PCG . . . B 2 17.329 3.896 1.348 1 19.84 ? N7 PCG 601 A 1 HETATM 16 C C5 PCG . . . B 2 18.013 5.023 1.244 1 19.5 ? C5 PCG 601 A 1 HETATM 17 C C6 PCG . . . B 2 18.134 6.031 0.215 1 21.33 ? C6 PCG 601 A 1 HETATM 18 O O6 PCG . . . B 2 17.526 5.883 -0.887 1 24.38 ? O6 PCG 601 A 1 HETATM 19 N N1 PCG . . . B 2 18.925 7.063 0.523 1 20.72 ? N1 PCG 601 A 1 HETATM 20 C C2 PCG . . . B 2 19.59 7.22 1.67 1 19.72 ? C2 PCG 601 A 1 HETATM 21 N N2 PCG . . . B 2 20.347 8.318 1.856 1 20.87 ? N2 PCG 601 A 1 HETATM 22 N N3 PCG . . . B 2 19.502 6.328 2.668 1 18.19 ? N3 PCG 601 A 1 HETATM 23 C C4 PCG . . . B 2 18.731 5.229 2.503 1 18.6 ? C4 PCG 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #