data_5E1J # _model_server_result.job_id vwQqmr8C1Ix0bj_Euq1EUg _model_server_result.datetime_utc '2025-04-02 11:57:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 5E1J # _exptl.entry_id 5E1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E1J _cell.length_a 88.43 _cell.length_b 158.85 _cell.length_c 217.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 120 A SER 120 1_555 K CA CA . A CA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A OE1 GLU 124 A GLU 124 1_555 K CA CA . A CA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 A OE2 GLU 124 A GLU 124 1_555 K CA CA . A CA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc4 A OD2 ASP 170 A ASP 170 1_555 K CA CA . A CA 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 A O GLU 239 A GLU 239 1_555 E BA BA . A BA 804 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc6 A OD1 ASP 240 A ASP 240 1_555 E BA BA . A BA 804 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc7 A OD2 ASP 240 A ASP 240 1_555 F BA BA . A BA 805 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc8 A OD1 ASP 335 A ASP 335 1_555 J CA CA . A CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc9 A OD1 ASP 337 A ASP 337 1_555 J CA CA . A CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc10 A OD2 ASP 337 A ASP 337 1_555 J CA CA . A CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc11 A OD1 ASN 339 A ASN 339 1_555 J CA CA . A CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc12 A O GLU 341 A GLU 341 1_555 J CA CA . A CA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc13 A OD1 ASP 454 A ASP 454 1_555 F BA BA . A BA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc14 A OD2 ASP 454 A ASP 454 1_555 F BA BA . A BA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc15 A OE2 GLU 457 A GLU 457 1_555 E BA BA . A BA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc16 A OE1 GLU 528 A GLU 528 1_555 F BA BA . A BA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc17 A OE1 GLU 605 A GLU 605 1_555 B BA BA . A BA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc18 A OE1 GLU 605 A GLU 605 1_555 B BA BA . A BA 801 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc19 D BA BA . A BA 803 1_555 L O HOH . A HOH 901 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc20 D BA BA . A BA 803 1_555 L O HOH . A HOH 901 4_555 ? B ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc21 D BA BA . A BA 803 1_555 L O HOH . A HOH 902 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc22 D BA BA . A BA 803 1_555 L O HOH . A HOH 902 4_555 ? B ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc23 D BA BA . A BA 803 1_555 L O HOH . A HOH 903 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc24 D BA BA . A BA 803 1_555 L O HOH . A HOH 903 4_555 ? A ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc25 D BA BA . A BA 803 1_555 L O HOH . A HOH 904 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc26 D BA BA . A BA 803 1_555 L O HOH . A HOH 904 4_555 ? A ? ? ? ? ? ? ? ? ? ? 2.749 ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5E1J _atom_sites.fract_transf_matrix[1][1] 0.011308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA A 1 801 1 BA BA . C 2 BA A 1 802 2 BA BA . D 2 BA A 1 803 3 BA BA . E 2 BA A 1 804 4 BA BA . F 2 BA A 1 805 5 BA BA . G 2 BA A 1 806 6 BA BA . H 2 BA A 1 807 7 BA BA . I 2 BA A 1 808 8 BA BA . J 3 CA A 1 809 1 CA CA . K 3 CA A 1 810 2 CA CA . L 4 HOH A 1 901 4 HOH HOH . L 4 HOH A 2 902 1 HOH HOH . L 4 HOH A 3 903 2 HOH HOH . L 4 HOH A 4 904 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BA BA BA . A . D 2 -17.782 0 0 0.42 72.32 ? BA BA 803 A 1 HETATM 2 BA BA BA . B . D 2 -14.55 0 0 0.28 72.32 ? BA BA 803 A 1 # _model_server_stats.io_time_ms 361 _model_server_stats.parse_time_ms 121 _model_server_stats.create_model_time_ms 97 _model_server_stats.query_time_ms 931 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 2 #