data_5E1R
#
_model_server_result.job_id            pvSZfLBBXdhNJ7DHoDcNCg 
_model_server_result.datetime_utc      '2024-10-28 02:22:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":802}' 
#
_entry.id    5E1R 
#
_exptl.entry_id    5E1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5E1R 
_cell.length_a            42.691 
_cell.length_b            151.61 
_cell.length_c            342.782 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,S,T,U 1 1 
D,E,F,M,N,O,P,Q,R,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 13 A TYR 379 1_555 G CU CU . A CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc2 A SG CYS 286 A CYS 652 1_555 G CU CU . A CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 A ND1 HIS 288 A HIS 654 1_555 G CU CU . A CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc4 A NE2 HIS 332 A HIS 698 1_555 G CU CU . A CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc5 B OH TYR 13 B TYR 379 1_555 I CU CU . B CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc6 B SG CYS 286 B CYS 652 1_555 I CU CU . B CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc7 B ND1 HIS 288 B HIS 654 1_555 I CU CU . B CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc8 B NE2 HIS 332 B HIS 698 1_555 I CU CU . B CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc9 C OH TYR 13 C TYR 379 1_555 K CU CU . C CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc10 C SG CYS 286 C CYS 652 1_555 K CU CU . C CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc11 C ND1 HIS 288 C HIS 654 1_555 K CU CU . C CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc12 C NE2 HIS 332 C HIS 698 1_555 K CU CU . C CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc13 D OH TYR 13 D TYR 379 1_555 M CU CU . D CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc14 D SG CYS 286 D CYS 652 1_555 M CU CU . D CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc15 D ND1 HIS 288 D HIS 654 1_555 M CU CU . D CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc16 D NE2 HIS 332 D HIS 698 1_555 M CU CU . D CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc17 E OH TYR 13 E TYR 379 1_555 O CU CU . E CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc18 E SG CYS 286 E CYS 652 1_555 O CU CU . E CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc19 E ND1 HIS 288 E HIS 654 1_555 O CU CU . E CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc20 E NE2 HIS 332 E HIS 698 1_555 O CU CU . E CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc21 F OH TYR 13 F TYR 379 1_555 Q CU CU . F CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc22 F SG CYS 286 F CYS 652 1_555 Q CU CU . F CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc23 F ND1 HIS 288 F HIS 654 1_555 Q CU CU . F CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc24 F NE2 HIS 332 F HIS 698 1_555 Q CU CU . F CU 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     5E1R 
_atom_sites.fract_transf_matrix[1][1]    0.023424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006596 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 CU A 1 801 800 CU CU . 
H 3 MPD A 1 802 900 MPD MPD . 
I 2 CU B 1 801 800 CU CU . 
J 3 MPD B 1 802 900 MPD MPD . 
K 2 CU C 1 801 800 CU CU . 
L 3 MPD C 1 802 900 MPD MPD . 
M 2 CU D 1 801 800 CU CU . 
N 3 MPD D 1 802 900 MPD MPD . 
O 2 CU E 1 801 800 CU CU . 
P 3 MPD E 1 802 900 MPD MPD . 
Q 2 CU F 1 801 800 CU CU . 
R 3 MPD F 1 802 900 MPD MPD . 
S 4 HOH A 1 901 15 HOH HOH . 
S 4 HOH A 2 902 8 HOH HOH . 
S 4 HOH A 3 903 16 HOH HOH . 
S 4 HOH A 4 904 12 HOH HOH . 
S 4 HOH A 5 905 3 HOH HOH . 
S 4 HOH A 6 906 13 HOH HOH . 
S 4 HOH A 7 907 14 HOH HOH . 
T 4 HOH B 1 901 41 HOH HOH . 
T 4 HOH B 2 902 18 HOH HOH . 
T 4 HOH B 3 903 2 HOH HOH . 
T 4 HOH B 4 904 35 HOH HOH . 
T 4 HOH B 5 905 25 HOH HOH . 
T 4 HOH B 6 906 17 HOH HOH . 
T 4 HOH B 7 907 40 HOH HOH . 
T 4 HOH B 8 908 31 HOH HOH . 
U 4 HOH C 1 901 20 HOH HOH . 
U 4 HOH C 2 902 28 HOH HOH . 
U 4 HOH C 3 903 11 HOH HOH . 
U 4 HOH C 4 904 4 HOH HOH . 
U 4 HOH C 5 905 21 HOH HOH . 
U 4 HOH C 6 906 10 HOH HOH . 
U 4 HOH C 7 907 32 HOH HOH . 
V 4 HOH D 1 901 7 HOH HOH . 
V 4 HOH D 2 902 38 HOH HOH . 
V 4 HOH D 3 903 26 HOH HOH . 
V 4 HOH D 4 904 24 HOH HOH . 
V 4 HOH D 5 905 33 HOH HOH . 
V 4 HOH D 6 906 37 HOH HOH . 
V 4 HOH D 7 907 34 HOH HOH . 
W 4 HOH E 1 901 22 HOH HOH . 
W 4 HOH E 2 902 27 HOH HOH . 
W 4 HOH E 3 903 5 HOH HOH . 
W 4 HOH E 4 904 23 HOH HOH . 
W 4 HOH E 5 905 6 HOH HOH . 
W 4 HOH E 6 906 36 HOH HOH . 
W 4 HOH E 7 907 30 HOH HOH . 
W 4 HOH E 8 908 29 HOH HOH . 
X 4 HOH F 1 901 9 HOH HOH . 
X 4 HOH F 2 902 1 HOH HOH . 
X 4 HOH F 3 903 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . H 3 -35.235 47.706 -49.686 1 12.83 ? C1 MPD 802 A 1 
HETATM 2 C C2 MPD . . . H 3 -36.497 48.309 -50.295 1 19.47 ? C2 MPD 802 A 1 
HETATM 3 O O2 MPD . . . H 3 -36.475 48.007 -51.713 1 8.15 ? O2 MPD 802 A 1 
HETATM 4 C CM MPD . . . H 3 -37.753 47.657 -49.725 1 16.04 ? CM MPD 802 A 1 
HETATM 5 C C3 MPD . . . H 3 -36.529 49.834 -50.156 1 15.59 ? C3 MPD 802 A 1 
HETATM 6 C C4 MPD . . . H 3 -36.745 50.447 -48.766 1 16.47 ? C4 MPD 802 A 1 
HETATM 7 O O4 MPD . . . H 3 -36.542 49.552 -47.694 1 21.23 ? O4 MPD 802 A 1 
HETATM 8 C C5 MPD . . . H 3 -35.828 51.649 -48.566 1 14.79 ? C5 MPD 802 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#