data_5E1S # _model_server_result.job_id '_vFBkND7DrMtZDW3wXj-FQ' _model_server_result.datetime_utc '2024-12-23 08:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 5E1S # _exptl.entry_id 5E1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-N-(1-{2-[4-(2-methoxyethyl)piperazin-1-yl]ethyl}-1H-pyrazol-3-yl)-5,8-dimethyl-9-phenyl-6,8-dihydro-5H-pyrazolo[3,4-h]quinazolin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E1S _cell.length_a 56.55 _cell.length_b 70.37 _cell.length_c 87.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H37 N9 O' _chem_comp.formula_weight 527.664 _chem_comp.id 5JA _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-N-(1-{2-[4-(2-methoxyethyl)piperazin-1-yl]ethyl}-1H-pyrazol-3-yl)-5,8-dimethyl-9-phenyl-6,8-dihydro-5H-pyrazolo[3,4-h]quinazolin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C26 5JA sing 1 n n C9 C10 5JA sing 2 n n C9 C8 5JA sing 3 n n C10 C13 5JA sing 4 n n C5 C8 5JA doub 5 n y C5 N6 5JA sing 6 n y C8 C7 5JA sing 7 n y N6 C2 5JA doub 8 n y C13 N14 5JA doub 9 n y C13 C12 5JA sing 10 n y C7 C12 5JA sing 11 n n C7 N3 5JA doub 12 n y N14 N15 5JA sing 13 n y C2 N3 5JA sing 14 n y C2 N4 5JA sing 15 n n C12 C11 5JA doub 16 n y N4 C29 5JA sing 17 n n N15 C11 5JA sing 18 n y N15 C25 5JA sing 19 n n C11 C1 5JA sing 20 n n C29 N30 5JA doub 21 n y C29 C28 5JA sing 22 n y N30 N19 5JA sing 23 n y C1 C24 5JA doub 24 n y C1 C20 5JA sing 25 n y C28 C27 5JA doub 26 n y C24 C23 5JA sing 27 n y C20 C21 5JA doub 28 n y N19 C27 5JA sing 29 n y N19 C18 5JA sing 30 n n C23 C22 5JA doub 31 n y C21 C22 5JA sing 32 n y C18 C17 5JA sing 33 n n C17 N16 5JA sing 34 n n N16 C35 5JA sing 35 n n N16 C31 5JA sing 36 n n C35 C34 5JA sing 37 n n C34 N33 5JA sing 38 n n C31 C32 5JA sing 39 n n C32 N33 5JA sing 40 n n N33 C36 5JA sing 41 n n C36 C37 5JA sing 42 n n C37 O38 5JA sing 43 n n O38 C39 5JA sing 44 n n C5 H1 5JA sing 45 n n C10 H2 5JA sing 46 n n C10 H3 5JA sing 47 n n C17 H4 5JA sing 48 n n C17 H5 5JA sing 49 n n C20 H6 5JA sing 50 n n C21 H7 5JA sing 51 n n C22 H8 5JA sing 52 n n C24 H9 5JA sing 53 n n C26 H10 5JA sing 54 n n C26 H11 5JA sing 55 n n C26 H12 5JA sing 56 n n C28 H13 5JA sing 57 n n N4 H14 5JA sing 58 n n C9 H15 5JA sing 59 n n C18 H17 5JA sing 60 n n C18 H18 5JA sing 61 n n C23 H19 5JA sing 62 n n C25 H20 5JA sing 63 n n C25 H21 5JA sing 64 n n C25 H22 5JA sing 65 n n C27 H23 5JA sing 66 n n C31 H24 5JA sing 67 n n C31 H25 5JA sing 68 n n C32 H26 5JA sing 69 n n C32 H27 5JA sing 70 n n C34 H29 5JA sing 71 n n C34 H30 5JA sing 72 n n C35 H31 5JA sing 73 n n C35 H32 5JA sing 74 n n C36 H33 5JA sing 75 n n C36 H34 5JA sing 76 n n C37 H35 5JA sing 77 n n C37 H36 5JA sing 78 n n C39 H37 5JA sing 79 n n C39 H38 5JA sing 80 n n C39 H39 5JA sing 81 n n # _atom_sites.entry_id 5E1S _atom_sites.fract_transf_matrix[1][1] 0.017683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5JA A 1 1301 1 5JA LIG . C 3 HOH A 1 1401 151 HOH HOH . C 3 HOH A 2 1402 1 HOH HOH . C 3 HOH A 3 1403 159 HOH HOH . C 3 HOH A 4 1404 68 HOH HOH . C 3 HOH A 5 1405 11 HOH HOH . C 3 HOH A 6 1406 67 HOH HOH . C 3 HOH A 7 1407 93 HOH HOH . C 3 HOH A 8 1408 10 HOH HOH . C 3 HOH A 9 1409 15 HOH HOH . C 3 HOH A 10 1410 139 HOH HOH . C 3 HOH A 11 1411 88 HOH HOH . C 3 HOH A 12 1412 161 HOH HOH . C 3 HOH A 13 1413 91 HOH HOH . C 3 HOH A 14 1414 104 HOH HOH . C 3 HOH A 15 1415 95 HOH HOH . C 3 HOH A 16 1416 7 HOH HOH . C 3 HOH A 17 1417 36 HOH HOH . C 3 HOH A 18 1418 4 HOH HOH . C 3 HOH A 19 1419 71 HOH HOH . C 3 HOH A 20 1420 35 HOH HOH . C 3 HOH A 21 1421 70 HOH HOH . C 3 HOH A 22 1422 152 HOH HOH . C 3 HOH A 23 1423 173 HOH HOH . C 3 HOH A 24 1424 147 HOH HOH . C 3 HOH A 25 1425 69 HOH HOH . C 3 HOH A 26 1426 6 HOH HOH . C 3 HOH A 27 1427 154 HOH HOH . C 3 HOH A 28 1428 86 HOH HOH . C 3 HOH A 29 1429 79 HOH HOH . C 3 HOH A 30 1430 155 HOH HOH . C 3 HOH A 31 1431 119 HOH HOH . C 3 HOH A 32 1432 142 HOH HOH . C 3 HOH A 33 1433 175 HOH HOH . C 3 HOH A 34 1434 52 HOH HOH . C 3 HOH A 35 1435 165 HOH HOH . C 3 HOH A 36 1436 17 HOH HOH . C 3 HOH A 37 1437 157 HOH HOH . C 3 HOH A 38 1438 73 HOH HOH . C 3 HOH A 39 1439 54 HOH HOH . C 3 HOH A 40 1440 28 HOH HOH . C 3 HOH A 41 1441 40 HOH HOH . C 3 HOH A 42 1442 177 HOH HOH . C 3 HOH A 43 1443 39 HOH HOH . C 3 HOH A 44 1444 51 HOH HOH . C 3 HOH A 45 1445 109 HOH HOH . C 3 HOH A 46 1446 138 HOH HOH . C 3 HOH A 47 1447 13 HOH HOH . C 3 HOH A 48 1448 16 HOH HOH . C 3 HOH A 49 1449 84 HOH HOH . C 3 HOH A 50 1450 82 HOH HOH . C 3 HOH A 51 1451 24 HOH HOH . C 3 HOH A 52 1452 29 HOH HOH . C 3 HOH A 53 1453 27 HOH HOH . C 3 HOH A 54 1454 2 HOH HOH . C 3 HOH A 55 1455 44 HOH HOH . C 3 HOH A 56 1456 176 HOH HOH . C 3 HOH A 57 1457 156 HOH HOH . C 3 HOH A 58 1458 37 HOH HOH . C 3 HOH A 59 1459 150 HOH HOH . C 3 HOH A 60 1460 26 HOH HOH . C 3 HOH A 61 1461 60 HOH HOH . C 3 HOH A 62 1462 64 HOH HOH . C 3 HOH A 63 1463 169 HOH HOH . C 3 HOH A 64 1464 3 HOH HOH . C 3 HOH A 65 1465 162 HOH HOH . C 3 HOH A 66 1466 8 HOH HOH . C 3 HOH A 67 1467 43 HOH HOH . C 3 HOH A 68 1468 38 HOH HOH . C 3 HOH A 69 1469 50 HOH HOH . C 3 HOH A 70 1470 77 HOH HOH . C 3 HOH A 71 1471 89 HOH HOH . C 3 HOH A 72 1472 122 HOH HOH . C 3 HOH A 73 1473 23 HOH HOH . C 3 HOH A 74 1474 55 HOH HOH . C 3 HOH A 75 1475 90 HOH HOH . C 3 HOH A 76 1476 74 HOH HOH . C 3 HOH A 77 1477 18 HOH HOH . C 3 HOH A 78 1478 22 HOH HOH . C 3 HOH A 79 1479 116 HOH HOH . C 3 HOH A 80 1480 19 HOH HOH . C 3 HOH A 81 1481 21 HOH HOH . C 3 HOH A 82 1482 49 HOH HOH . C 3 HOH A 83 1483 94 HOH HOH . C 3 HOH A 84 1484 110 HOH HOH . C 3 HOH A 85 1485 134 HOH HOH . C 3 HOH A 86 1486 96 HOH HOH . C 3 HOH A 87 1487 148 HOH HOH . C 3 HOH A 88 1488 66 HOH HOH . C 3 HOH A 89 1489 53 HOH HOH . C 3 HOH A 90 1490 100 HOH HOH . C 3 HOH A 91 1491 9 HOH HOH . C 3 HOH A 92 1492 48 HOH HOH . C 3 HOH A 93 1493 153 HOH HOH . C 3 HOH A 94 1494 75 HOH HOH . C 3 HOH A 95 1495 135 HOH HOH . C 3 HOH A 96 1496 164 HOH HOH . C 3 HOH A 97 1497 81 HOH HOH . C 3 HOH A 98 1498 144 HOH HOH . C 3 HOH A 99 1499 163 HOH HOH . C 3 HOH A 100 1500 171 HOH HOH . C 3 HOH A 101 1501 59 HOH HOH . C 3 HOH A 102 1502 78 HOH HOH . C 3 HOH A 103 1503 25 HOH HOH . C 3 HOH A 104 1504 140 HOH HOH . C 3 HOH A 105 1505 129 HOH HOH . C 3 HOH A 106 1506 72 HOH HOH . C 3 HOH A 107 1507 46 HOH HOH . C 3 HOH A 108 1508 31 HOH HOH . C 3 HOH A 109 1509 76 HOH HOH . C 3 HOH A 110 1510 30 HOH HOH . C 3 HOH A 111 1511 120 HOH HOH . C 3 HOH A 112 1512 149 HOH HOH . C 3 HOH A 113 1513 45 HOH HOH . C 3 HOH A 114 1514 85 HOH HOH . C 3 HOH A 115 1515 178 HOH HOH . C 3 HOH A 116 1516 102 HOH HOH . C 3 HOH A 117 1517 92 HOH HOH . C 3 HOH A 118 1518 65 HOH HOH . C 3 HOH A 119 1519 14 HOH HOH . C 3 HOH A 120 1520 34 HOH HOH . C 3 HOH A 121 1521 80 HOH HOH . C 3 HOH A 122 1522 130 HOH HOH . C 3 HOH A 123 1523 127 HOH HOH . C 3 HOH A 124 1524 101 HOH HOH . C 3 HOH A 125 1525 41 HOH HOH . C 3 HOH A 126 1526 5 HOH HOH . C 3 HOH A 127 1527 20 HOH HOH . C 3 HOH A 128 1528 125 HOH HOH . C 3 HOH A 129 1529 98 HOH HOH . C 3 HOH A 130 1530 58 HOH HOH . C 3 HOH A 131 1531 115 HOH HOH . C 3 HOH A 132 1532 47 HOH HOH . C 3 HOH A 133 1533 103 HOH HOH . C 3 HOH A 134 1534 143 HOH HOH . C 3 HOH A 135 1535 108 HOH HOH . C 3 HOH A 136 1536 137 HOH HOH . C 3 HOH A 137 1537 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5JA . . . B 2 5.483 21.311 18.169 0.91 26.81 ? N3 5JA 1301 A 1 HETATM 2 C C5 5JA . . . B 2 5.606 20.35 15.66 0.91 25.55 ? C5 5JA 1301 A 1 HETATM 3 C C7 5JA . . . B 2 6.521 21.649 17.399 0.91 26.89 ? C7 5JA 1301 A 1 HETATM 4 C C8 5JA . . . B 2 6.613 21.172 16.088 0.91 27.08 ? C8 5JA 1301 A 1 HETATM 5 C C10 5JA . . . B 2 8.385 22.887 15.483 0.91 26.28 ? C10 5JA 1301 A 1 HETATM 6 C C13 5JA . . . B 2 8.435 23.189 16.939 0.91 27.06 ? C13 5JA 1301 A 1 HETATM 7 C C17 5JA . . . B 2 1.091 19.098 23.084 0.91 40.14 ? C17 5JA 1301 A 1 HETATM 8 C C20 5JA . . . B 2 7.72 21.757 21.116 0.91 31.93 ? C20 5JA 1301 A 1 HETATM 9 C C21 5JA . . . B 2 7.243 21.569 22.398 0.91 31.83 ? C21 5JA 1301 A 1 HETATM 10 C C22 5JA . . . B 2 6.494 22.535 23.002 0.91 31.21 ? C22 5JA 1301 A 1 HETATM 11 C C24 5JA . . . B 2 6.678 23.895 21.055 0.91 31.12 ? C24 5JA 1301 A 1 HETATM 12 C C26 5JA . . . B 2 8.893 20.496 15.323 0.91 26.08 ? C26 5JA 1301 A 1 HETATM 13 C C28 5JA . . . B 2 3.968 21.328 20.574 0.91 33.26 ? C28 5JA 1301 A 1 HETATM 14 C C1 5JA . . . B 2 7.432 22.921 20.424 0.91 30.4 ? C1 5JA 1301 A 1 HETATM 15 C C2 5JA . . . B 2 4.562 20.504 17.642 0.91 27.76 ? C2 5JA 1301 A 1 HETATM 16 N N4 5JA . . . B 2 3.491 20.135 18.43 0.91 29.44 ? N4 5JA 1301 A 1 HETATM 17 N N6 5JA . . . B 2 4.575 19.997 16.413 0.91 26.81 ? N6 5JA 1301 A 1 HETATM 18 C C9 5JA . . . B 2 7.775 21.523 15.211 0.91 26.72 ? C9 5JA 1301 A 1 HETATM 19 C C11 5JA . . . B 2 7.946 23.14 19.061 0.91 29.02 ? C11 5JA 1301 A 1 HETATM 20 C C12 5JA . . . B 2 7.56 22.562 17.864 0.91 27.43 ? C12 5JA 1301 A 1 HETATM 21 N N14 5JA . . . B 2 9.248 23.967 17.484 0.91 27.64 ? N14 5JA 1301 A 1 HETATM 22 N N15 5JA . . . B 2 8.974 23.951 18.772 0.91 28.55 ? N15 5JA 1301 A 1 HETATM 23 N N16 5JA . . . B 2 -0.137 18.895 23.843 0.91 43.77 ? N16 5JA 1301 A 1 HETATM 24 C C18 5JA . . . B 2 1.196 20.456 22.633 0.91 37.44 ? C18 5JA 1301 A 1 HETATM 25 N N19 5JA . . . B 2 2.208 20.616 21.598 0.91 35.6 ? N19 5JA 1301 A 1 HETATM 26 C C23 5JA . . . B 2 6.21 23.693 22.333 0.91 32.06 ? C23 5JA 1301 A 1 HETATM 27 C C25 5JA . . . B 2 9.775 24.769 19.667 0.91 27.13 ? C25 5JA 1301 A 1 HETATM 28 C C27 5JA . . . B 2 3.295 21.379 21.741 0.91 33.99 ? C27 5JA 1301 A 1 HETATM 29 C C29 5JA . . . B 2 3.228 20.514 19.722 0.91 31.71 ? C29 5JA 1301 A 1 HETATM 30 N N30 5JA . . . B 2 2.123 20.08 20.359 0.91 32.87 ? N30 5JA 1301 A 1 HETATM 31 C C31 5JA . . . B 2 -0.015 19.446 25.201 0.91 46.25 ? C31 5JA 1301 A 1 HETATM 32 C C32 5JA . . . B 2 -1.266 19.16 26.017 0.91 49.88 ? C32 5JA 1301 A 1 HETATM 33 N N33 5JA . . . B 2 -1.545 17.721 26.043 0.91 52.9 ? N33 5JA 1301 A 1 HETATM 34 C C34 5JA . . . B 2 -1.705 17.224 24.683 0.91 50.01 ? C34 5JA 1301 A 1 HETATM 35 C C35 5JA . . . B 2 -0.446 17.47 23.889 0.91 46.49 ? C35 5JA 1301 A 1 HETATM 36 C C36 5JA . . . B 2 -2.708 17.392 26.874 0.5 57.55 ? C36 5JA 1301 A 1 HETATM 37 C C37 5JA . . . B 2 -2.368 17.127 28.323 0.5 60.59 ? C37 5JA 1301 A 1 HETATM 38 O O38 5JA . . . B 2 -1.891 15.808 28.453 0.5 62.8 ? O38 5JA 1301 A 1 HETATM 39 C C39 5JA . . . B 2 -2.903 14.885 28.757 0.5 62.98 ? C39 5JA 1301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #