data_5E22 # _model_server_result.job_id g5MtSymV-_LajyE61D5jow _model_server_result.datetime_utc '2024-12-17 02:59:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5E22 # _exptl.entry_id 5E22 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 113.31 _cell.angle_beta 113.31 _cell.angle_gamma 62.28 _cell.entry_id 5E22 _cell.length_a 38.146 _cell.length_b 38.146 _cell.length_c 39.01 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,E 1 1 A,C,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5E22 _atom_sites.fract_transf_matrix[1][1] 0.026215 _atom_sites.fract_transf_matrix[1][2] -0.013778 _atom_sites.fract_transf_matrix[1][3] 0.007986 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029615 _atom_sites.fract_transf_matrix[2][3] 0.007986 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 501 1 GOL GOL . D 3 HOH B 1 601 143 HOH HOH . D 3 HOH B 2 602 13 HOH HOH . D 3 HOH B 3 603 90 HOH HOH . D 3 HOH B 4 604 132 HOH HOH . D 3 HOH B 5 605 100 HOH HOH . D 3 HOH B 6 606 144 HOH HOH . D 3 HOH B 7 607 106 HOH HOH . D 3 HOH B 8 608 24 HOH HOH . D 3 HOH B 9 609 94 HOH HOH . D 3 HOH B 10 610 124 HOH HOH . D 3 HOH B 11 611 14 HOH HOH . D 3 HOH B 12 612 108 HOH HOH . D 3 HOH B 13 613 83 HOH HOH . D 3 HOH B 14 614 81 HOH HOH . D 3 HOH B 15 615 147 HOH HOH . D 3 HOH B 16 616 72 HOH HOH . D 3 HOH B 17 617 118 HOH HOH . D 3 HOH B 18 618 5 HOH HOH . D 3 HOH B 19 619 89 HOH HOH . D 3 HOH B 20 620 22 HOH HOH . D 3 HOH B 21 621 16 HOH HOH . D 3 HOH B 22 622 38 HOH HOH . D 3 HOH B 23 623 39 HOH HOH . D 3 HOH B 24 624 7 HOH HOH . D 3 HOH B 25 625 2 HOH HOH . D 3 HOH B 26 626 26 HOH HOH . D 3 HOH B 27 627 28 HOH HOH . D 3 HOH B 28 628 80 HOH HOH . D 3 HOH B 29 629 23 HOH HOH . D 3 HOH B 30 630 27 HOH HOH . D 3 HOH B 31 631 19 HOH HOH . D 3 HOH B 32 632 25 HOH HOH . D 3 HOH B 33 633 9 HOH HOH . D 3 HOH B 34 634 3 HOH HOH . D 3 HOH B 35 635 10 HOH HOH . D 3 HOH B 36 636 6 HOH HOH . D 3 HOH B 37 637 33 HOH HOH . D 3 HOH B 38 638 1 HOH HOH . D 3 HOH B 39 639 8 HOH HOH . D 3 HOH B 40 640 20 HOH HOH . D 3 HOH B 41 641 99 HOH HOH . D 3 HOH B 42 642 4 HOH HOH . D 3 HOH B 43 643 11 HOH HOH . D 3 HOH B 44 644 34 HOH HOH . D 3 HOH B 45 645 12 HOH HOH . D 3 HOH B 46 646 32 HOH HOH . D 3 HOH B 47 647 97 HOH HOH . D 3 HOH B 48 648 18 HOH HOH . D 3 HOH B 49 649 82 HOH HOH . D 3 HOH B 50 650 103 HOH HOH . D 3 HOH B 51 651 163 HOH HOH . D 3 HOH B 52 652 17 HOH HOH . D 3 HOH B 53 653 165 HOH HOH . D 3 HOH B 54 654 15 HOH HOH . D 3 HOH B 55 655 31 HOH HOH . D 3 HOH B 56 656 154 HOH HOH . D 3 HOH B 57 657 116 HOH HOH . D 3 HOH B 58 658 36 HOH HOH . D 3 HOH B 59 659 137 HOH HOH . D 3 HOH B 60 660 41 HOH HOH . D 3 HOH B 61 661 122 HOH HOH . D 3 HOH B 62 662 123 HOH HOH . D 3 HOH B 63 663 35 HOH HOH . D 3 HOH B 64 664 150 HOH HOH . D 3 HOH B 65 665 21 HOH HOH . D 3 HOH B 66 666 30 HOH HOH . D 3 HOH B 67 667 128 HOH HOH . D 3 HOH B 68 668 29 HOH HOH . D 3 HOH B 69 669 121 HOH HOH . D 3 HOH B 70 670 139 HOH HOH . D 3 HOH B 71 671 157 HOH HOH . D 3 HOH B 72 672 130 HOH HOH . D 3 HOH B 73 673 161 HOH HOH . D 3 HOH B 74 674 156 HOH HOH . D 3 HOH B 75 675 104 HOH HOH . D 3 HOH B 76 676 129 HOH HOH . D 3 HOH B 77 677 162 HOH HOH . D 3 HOH B 78 678 160 HOH HOH . D 3 HOH B 79 679 92 HOH HOH . E 3 HOH A 1 501 141 HOH HOH . E 3 HOH A 2 502 138 HOH HOH . E 3 HOH A 3 503 91 HOH HOH . E 3 HOH A 4 504 96 HOH HOH . E 3 HOH A 5 505 149 HOH HOH . E 3 HOH A 6 506 75 HOH HOH . E 3 HOH A 7 507 112 HOH HOH . E 3 HOH A 8 508 70 HOH HOH . E 3 HOH A 9 509 40 HOH HOH . E 3 HOH A 10 510 135 HOH HOH . E 3 HOH A 11 511 140 HOH HOH . E 3 HOH A 12 512 71 HOH HOH . E 3 HOH A 13 513 66 HOH HOH . E 3 HOH A 14 514 126 HOH HOH . E 3 HOH A 15 515 127 HOH HOH . E 3 HOH A 16 516 37 HOH HOH . E 3 HOH A 17 517 87 HOH HOH . E 3 HOH A 18 518 53 HOH HOH . E 3 HOH A 19 519 114 HOH HOH . E 3 HOH A 20 520 46 HOH HOH . E 3 HOH A 21 521 110 HOH HOH . E 3 HOH A 22 522 48 HOH HOH . E 3 HOH A 23 523 62 HOH HOH . E 3 HOH A 24 524 42 HOH HOH . E 3 HOH A 25 525 57 HOH HOH . E 3 HOH A 26 526 69 HOH HOH . E 3 HOH A 27 527 119 HOH HOH . E 3 HOH A 28 528 47 HOH HOH . E 3 HOH A 29 529 76 HOH HOH . E 3 HOH A 30 530 44 HOH HOH . E 3 HOH A 31 531 67 HOH HOH . E 3 HOH A 32 532 86 HOH HOH . E 3 HOH A 33 533 59 HOH HOH . E 3 HOH A 34 534 78 HOH HOH . E 3 HOH A 35 535 109 HOH HOH . E 3 HOH A 36 536 58 HOH HOH . E 3 HOH A 37 537 50 HOH HOH . E 3 HOH A 38 538 43 HOH HOH . E 3 HOH A 39 539 51 HOH HOH . E 3 HOH A 40 540 164 HOH HOH . E 3 HOH A 41 541 54 HOH HOH . E 3 HOH A 42 542 52 HOH HOH . E 3 HOH A 43 543 74 HOH HOH . E 3 HOH A 44 544 60 HOH HOH . E 3 HOH A 45 545 64 HOH HOH . E 3 HOH A 46 546 84 HOH HOH . E 3 HOH A 47 547 158 HOH HOH . E 3 HOH A 48 548 136 HOH HOH . E 3 HOH A 49 549 85 HOH HOH . E 3 HOH A 50 550 49 HOH HOH . E 3 HOH A 51 551 77 HOH HOH . E 3 HOH A 52 552 45 HOH HOH . E 3 HOH A 53 553 68 HOH HOH . E 3 HOH A 54 554 56 HOH HOH . E 3 HOH A 55 555 113 HOH HOH . E 3 HOH A 56 556 61 HOH HOH . E 3 HOH A 57 557 79 HOH HOH . E 3 HOH A 58 558 105 HOH HOH . E 3 HOH A 59 559 148 HOH HOH . E 3 HOH A 60 560 93 HOH HOH . E 3 HOH A 61 561 145 HOH HOH . E 3 HOH A 62 562 101 HOH HOH . E 3 HOH A 63 563 115 HOH HOH . E 3 HOH A 64 564 55 HOH HOH . E 3 HOH A 65 565 152 HOH HOH . E 3 HOH A 66 566 63 HOH HOH . E 3 HOH A 67 567 159 HOH HOH . E 3 HOH A 68 568 111 HOH HOH . E 3 HOH A 69 569 153 HOH HOH . E 3 HOH A 70 570 88 HOH HOH . E 3 HOH A 71 571 131 HOH HOH . E 3 HOH A 72 572 102 HOH HOH . E 3 HOH A 73 573 107 HOH HOH . E 3 HOH A 74 574 146 HOH HOH . E 3 HOH A 75 575 134 HOH HOH . E 3 HOH A 76 576 155 HOH HOH . E 3 HOH A 77 577 95 HOH HOH . E 3 HOH A 78 578 98 HOH HOH . E 3 HOH A 79 579 125 HOH HOH . E 3 HOH A 80 580 73 HOH HOH . E 3 HOH A 81 581 117 HOH HOH . E 3 HOH A 82 582 120 HOH HOH . E 3 HOH A 83 583 65 HOH HOH . E 3 HOH A 84 584 151 HOH HOH . E 3 HOH A 85 585 133 HOH HOH . E 3 HOH A 86 586 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -2.293 3.685 9.582 1 49.49 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . C 2 -2.207 3.271 10.927 1 49.49 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . C 2 -3.665 3.327 9.024 1 49.49 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . C 2 -4.459 2.764 10.045 1 49.49 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . C 2 -4.351 4.565 8.454 1 49.49 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . C 2 -5.443 4.167 7.657 1 49.49 ? O3 GOL 501 B 1 HETATM 7 H H11 GOL . . . C 2 -2.137 4.762 9.519 1 49.49 ? H11 GOL 501 B 1 HETATM 8 H H12 GOL . . . C 2 -1.517 3.194 8.995 1 49.49 ? H12 GOL 501 B 1 HETATM 9 H HO1 GOL . . . C 2 -1.303 3.442 11.264 1 49.49 ? HO1 GOL 501 B 1 HETATM 10 H H2 GOL . . . C 2 -3.534 2.603 8.22 1 49.49 ? H2 GOL 501 B 1 HETATM 11 H HO2 GOL . . . C 2 -4.595 3.425 10.755 1 49.49 ? HO2 GOL 501 B 1 HETATM 12 H H31 GOL . . . C 2 -4.699 5.202 9.267 1 49.49 ? H31 GOL 501 B 1 HETATM 13 H H32 GOL . . . C 2 -3.645 5.136 7.851 1 49.49 ? H32 GOL 501 B 1 HETATM 14 H HO3 GOL . . . C 2 -6.235 4.053 8.222 1 49.49 ? HO3 GOL 501 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #