data_5E2D # _model_server_result.job_id HwDJm-qnF6e5gvd0OqUBhQ _model_server_result.datetime_utc '2024-11-09 02:06:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5E2D # _exptl.entry_id 5E2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.217 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRIDIUM (III) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E2D _cell.length_a 181.19 _cell.length_b 181.19 _cell.length_c 181.19 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 45 A GLU 45 1_555 J PD PLL . A PLL 209 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc2 A OE1 GLU 45 A GLU 45 1_555 K PD PLL . A PLL 210 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A OE2 GLU 45 A GLU 45 1_555 K PD PLL . A PLL 210 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A SG CYS 48 A CYS 48 1_555 J PD PLL . A PLL 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc5 A SG CYS 48 A CYS 48 1_555 K PD PLL . A PLL 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 A NE2 HIS 49 A HIS 49 1_555 B IR IR3 . A IR3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc7 A OD1 ASP 80 A ASP 80 1_555 M CD CD . A CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc8 A OD2 ASP 80 A ASP 80 1_555 M CD CD . A CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing metalc ? metalc9 A NE2 HIS 114 A HIS 114 1_555 L PD PD . A PD 211 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc10 A NE2 HIS 114 A HIS 114 1_555 L PD PD . A PD 211 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc11 A SG CYS 126 A CYS 126 1_555 L PD PD . A PD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'Ir 3' _chem_comp.formula_weight 192.217 _chem_comp.id IR3 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRIDIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5E2D _atom_sites.fract_transf_matrix[1][1] 0.005519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IR3 A 1 201 1 IR3 IR3 . C 2 IR3 A 1 202 2 IR3 IR3 . D 2 IR3 A 1 203 3 IR3 IR3 . E 2 IR3 A 1 204 4 IR3 IR3 . F 2 IR3 A 1 205 5 IR3 IR3 . G 3 IR A 1 206 6 IR IR . H 4 SO4 A 1 207 1 SO4 SO4 . I 4 SO4 A 1 208 2 SO4 SO4 . J 5 PLL A 1 209 1 PLL PLL . K 5 PLL A 1 210 2 PLL PLL . L 6 PD A 1 211 1 PD PD . M 7 CD A 1 212 1 CD CD . N 8 HOH A 1 301 101 HOH HOH . N 8 HOH A 2 302 79 HOH HOH . N 8 HOH A 3 303 92 HOH HOH . N 8 HOH A 4 304 110 HOH HOH . N 8 HOH A 5 305 121 HOH HOH . N 8 HOH A 6 306 50 HOH HOH . N 8 HOH A 7 307 54 HOH HOH . N 8 HOH A 8 308 90 HOH HOH . N 8 HOH A 9 309 97 HOH HOH . N 8 HOH A 10 310 99 HOH HOH . N 8 HOH A 11 311 32 HOH HOH . N 8 HOH A 12 312 57 HOH HOH . N 8 HOH A 13 313 11 HOH HOH . N 8 HOH A 14 314 98 HOH HOH . N 8 HOH A 15 315 100 HOH HOH . N 8 HOH A 16 316 93 HOH HOH . N 8 HOH A 17 317 95 HOH HOH . N 8 HOH A 18 318 62 HOH HOH . N 8 HOH A 19 319 60 HOH HOH . N 8 HOH A 20 320 5 HOH HOH . N 8 HOH A 21 321 40 HOH HOH . N 8 HOH A 22 322 27 HOH HOH . N 8 HOH A 23 323 125 HOH HOH . N 8 HOH A 24 324 7 HOH HOH . N 8 HOH A 25 325 22 HOH HOH . N 8 HOH A 26 326 106 HOH HOH . N 8 HOH A 27 327 34 HOH HOH . N 8 HOH A 28 328 114 HOH HOH . N 8 HOH A 29 329 2 HOH HOH . N 8 HOH A 30 330 43 HOH HOH . N 8 HOH A 31 331 119 HOH HOH . N 8 HOH A 32 332 12 HOH HOH . N 8 HOH A 33 333 30 HOH HOH . N 8 HOH A 34 334 47 HOH HOH . N 8 HOH A 35 335 88 HOH HOH . N 8 HOH A 36 336 146 HOH HOH . N 8 HOH A 37 337 38 HOH HOH . N 8 HOH A 38 338 138 HOH HOH . N 8 HOH A 39 339 124 HOH HOH . N 8 HOH A 40 340 13 HOH HOH . N 8 HOH A 41 341 94 HOH HOH . N 8 HOH A 42 342 9 HOH HOH . N 8 HOH A 43 343 16 HOH HOH . N 8 HOH A 44 344 134 HOH HOH . N 8 HOH A 45 345 137 HOH HOH . N 8 HOH A 46 346 14 HOH HOH . N 8 HOH A 47 347 10 HOH HOH . N 8 HOH A 48 348 25 HOH HOH . N 8 HOH A 49 349 82 HOH HOH . N 8 HOH A 50 350 74 HOH HOH . N 8 HOH A 51 351 17 HOH HOH . N 8 HOH A 52 352 147 HOH HOH . N 8 HOH A 53 353 35 HOH HOH . N 8 HOH A 54 354 80 HOH HOH . N 8 HOH A 55 355 130 HOH HOH . N 8 HOH A 56 356 24 HOH HOH . N 8 HOH A 57 357 128 HOH HOH . N 8 HOH A 58 358 31 HOH HOH . N 8 HOH A 59 359 19 HOH HOH . N 8 HOH A 60 360 33 HOH HOH . N 8 HOH A 61 361 69 HOH HOH . N 8 HOH A 62 362 51 HOH HOH . N 8 HOH A 63 363 42 HOH HOH . N 8 HOH A 64 364 20 HOH HOH . N 8 HOH A 65 365 52 HOH HOH . N 8 HOH A 66 366 46 HOH HOH . N 8 HOH A 67 367 15 HOH HOH . N 8 HOH A 68 368 142 HOH HOH . N 8 HOH A 69 369 56 HOH HOH . N 8 HOH A 70 370 26 HOH HOH . N 8 HOH A 71 371 143 HOH HOH . N 8 HOH A 72 372 21 HOH HOH . N 8 HOH A 73 373 112 HOH HOH . N 8 HOH A 74 374 122 HOH HOH . N 8 HOH A 75 375 6 HOH HOH . N 8 HOH A 76 376 41 HOH HOH . N 8 HOH A 77 377 127 HOH HOH . N 8 HOH A 78 378 144 HOH HOH . N 8 HOH A 79 379 49 HOH HOH . N 8 HOH A 80 380 78 HOH HOH . N 8 HOH A 81 381 77 HOH HOH . N 8 HOH A 82 382 113 HOH HOH . N 8 HOH A 83 383 96 HOH HOH . N 8 HOH A 84 384 83 HOH HOH . N 8 HOH A 85 385 59 HOH HOH . N 8 HOH A 86 386 135 HOH HOH . N 8 HOH A 87 387 36 HOH HOH . N 8 HOH A 88 388 107 HOH HOH . N 8 HOH A 89 389 29 HOH HOH . N 8 HOH A 90 390 85 HOH HOH . N 8 HOH A 91 391 136 HOH HOH . N 8 HOH A 92 392 65 HOH HOH . N 8 HOH A 93 393 89 HOH HOH . N 8 HOH A 94 394 105 HOH HOH . N 8 HOH A 95 395 76 HOH HOH . N 8 HOH A 96 396 145 HOH HOH . N 8 HOH A 97 397 45 HOH HOH . N 8 HOH A 98 398 84 HOH HOH . N 8 HOH A 99 399 71 HOH HOH . N 8 HOH A 100 400 120 HOH HOH . N 8 HOH A 101 401 61 HOH HOH . N 8 HOH A 102 402 103 HOH HOH . N 8 HOH A 103 403 102 HOH HOH . N 8 HOH A 104 404 117 HOH HOH . N 8 HOH A 105 405 104 HOH HOH . N 8 HOH A 106 406 86 HOH HOH . N 8 HOH A 107 407 23 HOH HOH . N 8 HOH A 108 408 118 HOH HOH . N 8 HOH A 109 409 139 HOH HOH . N 8 HOH A 110 410 141 HOH HOH . N 8 HOH A 111 411 140 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol IR _atom_site.label_atom_id IR _atom_site.label_comp_id IR3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.88 _atom_site.Cartn_y 1.478 _atom_site.Cartn_z 32.431 _atom_site.occupancy 0.2 _atom_site.B_iso_or_equiv 37.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id IR _atom_site.auth_comp_id IR3 _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #