data_5E2I # _model_server_result.job_id s5DGdYJJEM-0oHcqECffGQ _model_server_result.datetime_utc '2024-10-14 10:13:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 5E2I # _exptl.entry_id 5E2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.486 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DECAMETHONIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5E2I _cell.length_a 112.609 _cell.length_b 112.609 _cell.length_c 136.871 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_557 x-y,-y,-z+8/3 1 0 0 0 -1 0 0 0 -1 0 0 364.989333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 67 1_555 A SG CYS 91 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 251 A CYS 254 1_555 A SG CYS 262 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 399 A CYS 402 1_555 A SG CYS 518 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 56 A ASN 59 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A ND2 ASN 413 A ASN 416 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C16 H38 N2 2' _chem_comp.formula_weight 258.486 _chem_comp.id DME _chem_comp.mon_nstd_flag . _chem_comp.name 'DECAMETHONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DME sing 83 n n N1 C13 DME sing 84 n n N1 C14 DME sing 85 n n N1 C15 DME sing 86 n n C2 C3 DME sing 87 n n C2 H21 DME sing 88 n n C2 H22 DME sing 89 n n C3 C4 DME sing 90 n n C3 H31 DME sing 91 n n C3 H32 DME sing 92 n n C4 C5 DME sing 93 n n C4 H41 DME sing 94 n n C4 H42 DME sing 95 n n C5 C6 DME sing 96 n n C5 H51 DME sing 97 n n C5 H52 DME sing 98 n n C6 C7 DME sing 99 n n C6 H61 DME sing 100 n n C6 H62 DME sing 101 n n C7 C8 DME sing 102 n n C7 H71 DME sing 103 n n C7 H72 DME sing 104 n n C8 C9 DME sing 105 n n C8 H81 DME sing 106 n n C8 H82 DME sing 107 n n C9 C10 DME sing 108 n n C9 H91 DME sing 109 n n C9 H92 DME sing 110 n n C10 C11 DME sing 111 n n C10 H101 DME sing 112 n n C10 H102 DME sing 113 n n C11 N12 DME sing 114 n n C11 H111 DME sing 115 n n C11 H112 DME sing 116 n n N12 C16 DME sing 117 n n N12 C17 DME sing 118 n n N12 C18 DME sing 119 n n C13 H131 DME sing 120 n n C13 H132 DME sing 121 n n C13 H133 DME sing 122 n n C14 H141 DME sing 123 n n C14 H142 DME sing 124 n n C14 H143 DME sing 125 n n C15 H151 DME sing 126 n n C15 H152 DME sing 127 n n C15 H153 DME sing 128 n n C16 H161 DME sing 129 n n C16 H162 DME sing 130 n n C16 H163 DME sing 131 n n C17 H171 DME sing 132 n n C17 H172 DME sing 133 n n C17 H173 DME sing 134 n n C18 H181 DME sing 135 n n C18 H182 DME sing 136 n n C18 H183 DME sing 137 n n # _atom_sites.entry_id 5E2I _atom_sites.fract_transf_matrix[1][1] 0.00888 _atom_sites.fract_transf_matrix[1][2] 0.005127 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 1539 NAG NAG . C 2 NAG A 1 602 1540 NAG NAG . D 3 PEG A 1 603 701 PEG PEG . E 3 PEG A 1 604 702 PEG PEG . F 4 DME A 1 605 999 DME DME . G 5 HOH A 1 701 2005 HOH HOH . G 5 HOH A 2 702 2009 HOH HOH . G 5 HOH A 3 703 2010 HOH HOH . G 5 HOH A 4 704 2041 HOH HOH . G 5 HOH A 5 705 2012 HOH HOH . G 5 HOH A 6 706 2008 HOH HOH . G 5 HOH A 7 707 2001 HOH HOH . G 5 HOH A 8 708 2006 HOH HOH . G 5 HOH A 9 709 2007 HOH HOH . G 5 HOH A 10 710 2046 HOH HOH . G 5 HOH A 11 711 2013 HOH HOH . G 5 HOH A 12 712 2026 HOH HOH . G 5 HOH A 13 713 2004 HOH HOH . G 5 HOH A 14 714 2029 HOH HOH . G 5 HOH A 15 715 2035 HOH HOH . G 5 HOH A 16 716 2045 HOH HOH . G 5 HOH A 17 717 2036 HOH HOH . G 5 HOH A 18 718 2040 HOH HOH . G 5 HOH A 19 719 2038 HOH HOH . G 5 HOH A 20 720 2002 HOH HOH . G 5 HOH A 21 721 2030 HOH HOH . G 5 HOH A 22 722 2019 HOH HOH . G 5 HOH A 23 723 2014 HOH HOH . G 5 HOH A 24 724 2037 HOH HOH . G 5 HOH A 25 725 2003 HOH HOH . G 5 HOH A 26 726 2039 HOH HOH . G 5 HOH A 27 727 2044 HOH HOH . G 5 HOH A 28 728 2022 HOH HOH . G 5 HOH A 29 729 2028 HOH HOH . G 5 HOH A 30 730 2032 HOH HOH . G 5 HOH A 31 731 2017 HOH HOH . G 5 HOH A 32 732 2031 HOH HOH . G 5 HOH A 33 733 2042 HOH HOH . G 5 HOH A 34 734 2021 HOH HOH . G 5 HOH A 35 735 2020 HOH HOH . G 5 HOH A 36 736 2043 HOH HOH . G 5 HOH A 37 737 2023 HOH HOH . G 5 HOH A 38 738 2016 HOH HOH . G 5 HOH A 39 739 2011 HOH HOH . G 5 HOH A 40 740 2033 HOH HOH . G 5 HOH A 41 741 2027 HOH HOH . G 5 HOH A 42 742 2034 HOH HOH . G 5 HOH A 43 743 2048 HOH HOH . G 5 HOH A 44 744 2025 HOH HOH . G 5 HOH A 45 745 2049 HOH HOH . G 5 HOH A 46 746 2018 HOH HOH . G 5 HOH A 47 747 2047 HOH HOH . G 5 HOH A 48 748 2024 HOH HOH . G 5 HOH A 49 749 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DME . . . F 4 60.452 30.448 182.136 1 76.12 ? N1 DME 605 A 1 HETATM 2 C C2 DME . . . F 4 59.127 30.111 182.713 1 70.77 ? C2 DME 605 A 1 HETATM 3 C C3 DME . . . F 4 58.817 28.635 182.511 1 69.21 ? C3 DME 605 A 1 HETATM 4 C C4 DME . . . F 4 57.635 28.207 183.367 1 69.08 ? C4 DME 605 A 1 HETATM 5 C C5 DME . . . F 4 56.308 28.594 182.73 1 67.31 ? C5 DME 605 A 1 HETATM 6 C C6 DME . . . F 4 55.331 29.043 183.801 1 66.68 ? C6 DME 605 A 1 HETATM 7 C C7 DME . . . F 4 55.611 30.483 184.209 1 66.81 ? C7 DME 605 A 1 HETATM 8 C C8 DME . . . F 4 55.085 30.761 185.614 1 66.72 ? C8 DME 605 A 1 HETATM 9 C C9 DME . . . F 4 54.363 32.101 185.684 1 65.96 ? C9 DME 605 A 1 HETATM 10 C C10 DME . . . F 4 52.872 31.906 185.902 1 66.39 ? C10 DME 605 A 1 HETATM 11 C C11 DME . . . F 4 52.569 31.618 187.366 1 70.74 ? C11 DME 605 A 1 HETATM 12 N N12 DME . . . F 4 51.267 32.227 187.718 1 75.82 ? N12 DME 605 A 1 HETATM 13 C C13 DME . . . F 4 61.247 31.526 182.76 1 76.73 ? C13 DME 605 A 1 HETATM 14 C C14 DME . . . F 4 61.056 29.688 181.022 1 78.67 ? C14 DME 605 A 1 HETATM 15 C C15 DME . . . F 4 59.846 31.433 181.171 1 77.54 ? C15 DME 605 A 1 HETATM 16 C C16 DME . . . F 4 50.087 31.339 187.826 1 75.63 ? C16 DME 605 A 1 HETATM 17 C C17 DME . . . F 4 51.136 33.704 187.869 1 74.48 ? C17 DME 605 A 1 HETATM 18 C C18 DME . . . F 4 51.544 32.082 189.193 1 79.45 ? C18 DME 605 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #