data_5E2L
#
_model_server_result.job_id            Px-cuH-1UHWSAgCuDQ3W0Q 
_model_server_result.datetime_utc      '2024-11-24 13:54:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    5E2L 
#
_exptl.entry_id    5E2L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5E2L 
_cell.length_a            203.989 
_cell.length_b            203.989 
_cell.length_c            66.904 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E2L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 22.301333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 89 A CYS 87 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc2 A NE2 HIS 371 A HIS 369 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 A OE2 GLU 413 A GLU 411 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc4 A OD2 ASP 443 A ASP 441 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc5 B SG CYS 89 B CYS 87 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc6 B NE2 HIS 371 B HIS 369 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc7 B OE2 GLU 413 B GLU 411 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc8 B OD2 ASP 443 B ASP 441 1_555 N MN MN . B MN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 152 n n 
C1 C2 GOL sing 153 n n 
C1 H11 GOL sing 154 n n 
C1 H12 GOL sing 155 n n 
O1 HO1 GOL sing 156 n n 
C2 O2 GOL sing 157 n n 
C2 C3 GOL sing 158 n n 
C2 H2 GOL sing 159 n n 
O2 HO2 GOL sing 160 n n 
C3 O3 GOL sing 161 n n 
C3 H31 GOL sing 162 n n 
C3 H32 GOL sing 163 n n 
O3 HO3 GOL sing 164 n n 
#
_atom_sites.entry_id                     5E2L 
_atom_sites.fract_transf_matrix[1][1]    0.004902 
_atom_sites.fract_transf_matrix[1][2]    0.00283 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014947 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 501 3 SO4 SO4 . 
D 3 MN A 1 502 700 MN MN . 
E 4 CL A 1 503 10 CL CL . 
F 5 GOL A 1 504 11 GOL GOL . 
G 4 CL A 1 505 12 CL CL . 
H 4 CL A 1 506 13 CL CL . 
I 6 DPN A 1 507 901 DPN DPN . 
J 2 SO4 B 1 501 1 SO4 SO4 . 
K 2 SO4 B 1 502 2 SO4 SO4 . 
L 2 SO4 B 1 503 4 SO4 SO4 . 
M 2 SO4 B 1 504 5 SO4 SO4 . 
N 3 MN B 1 505 701 MN MN . 
O 4 CL B 1 506 7 CL CL . 
P 5 GOL B 1 507 9 GOL GOL . 
Q 4 CL B 1 508 14 CL CL . 
R 6 DPN B 1 509 900 DPN DPN . 
S 7 HOH A 1 601 16 HOH HOH . 
S 7 HOH A 2 602 48 HOH HOH . 
S 7 HOH A 3 603 63 HOH HOH . 
S 7 HOH A 4 604 62 HOH HOH . 
S 7 HOH A 5 605 22 HOH HOH . 
S 7 HOH A 6 606 56 HOH HOH . 
S 7 HOH A 7 607 50 HOH HOH . 
S 7 HOH A 8 608 42 HOH HOH . 
S 7 HOH A 9 609 23 HOH HOH . 
S 7 HOH A 10 610 14 HOH HOH . 
S 7 HOH A 11 611 33 HOH HOH . 
S 7 HOH A 12 612 11 HOH HOH . 
S 7 HOH A 13 613 10 HOH HOH . 
S 7 HOH A 14 614 28 HOH HOH . 
S 7 HOH A 15 615 57 HOH HOH . 
S 7 HOH A 16 616 49 HOH HOH . 
S 7 HOH A 17 617 34 HOH HOH . 
S 7 HOH A 18 618 82 HOH HOH . 
S 7 HOH A 19 619 8 HOH HOH . 
S 7 HOH A 20 620 7 HOH HOH . 
S 7 HOH A 21 621 9 HOH HOH . 
S 7 HOH A 22 622 47 HOH HOH . 
S 7 HOH A 23 623 3 HOH HOH . 
S 7 HOH A 24 624 69 HOH HOH . 
S 7 HOH A 25 625 68 HOH HOH . 
S 7 HOH A 26 626 13 HOH HOH . 
S 7 HOH A 27 627 46 HOH HOH . 
S 7 HOH A 28 628 31 HOH HOH . 
S 7 HOH A 29 629 40 HOH HOH . 
S 7 HOH A 30 630 44 HOH HOH . 
S 7 HOH A 31 631 39 HOH HOH . 
S 7 HOH A 32 632 45 HOH HOH . 
S 7 HOH A 33 633 43 HOH HOH . 
T 7 HOH B 1 601 64 HOH HOH . 
T 7 HOH B 2 602 29 HOH HOH . 
T 7 HOH B 3 603 60 HOH HOH . 
T 7 HOH B 4 604 24 HOH HOH . 
T 7 HOH B 5 605 19 HOH HOH . 
T 7 HOH B 6 606 55 HOH HOH . 
T 7 HOH B 7 607 41 HOH HOH . 
T 7 HOH B 8 608 30 HOH HOH . 
T 7 HOH B 9 609 17 HOH HOH . 
T 7 HOH B 10 610 67 HOH HOH . 
T 7 HOH B 11 611 27 HOH HOH . 
T 7 HOH B 12 612 54 HOH HOH . 
T 7 HOH B 13 613 12 HOH HOH . 
T 7 HOH B 14 614 20 HOH HOH . 
T 7 HOH B 15 615 25 HOH HOH . 
T 7 HOH B 16 616 26 HOH HOH . 
T 7 HOH B 17 617 5 HOH HOH . 
T 7 HOH B 18 618 18 HOH HOH . 
T 7 HOH B 19 619 72 HOH HOH . 
T 7 HOH B 20 620 1 HOH HOH . 
T 7 HOH B 21 621 66 HOH HOH . 
T 7 HOH B 22 622 53 HOH HOH . 
T 7 HOH B 23 623 2 HOH HOH . 
T 7 HOH B 24 624 65 HOH HOH . 
T 7 HOH B 25 625 70 HOH HOH . 
T 7 HOH B 26 626 35 HOH HOH . 
T 7 HOH B 27 627 61 HOH HOH . 
T 7 HOH B 28 628 71 HOH HOH . 
T 7 HOH B 29 629 15 HOH HOH . 
T 7 HOH B 30 630 37 HOH HOH . 
T 7 HOH B 31 631 32 HOH HOH . 
T 7 HOH B 32 632 6 HOH HOH . 
T 7 HOH B 33 633 73 HOH HOH . 
T 7 HOH B 34 634 59 HOH HOH . 
T 7 HOH B 35 635 81 HOH HOH . 
T 7 HOH B 36 636 74 HOH HOH . 
T 7 HOH B 37 637 21 HOH HOH . 
T 7 HOH B 38 638 51 HOH HOH . 
T 7 HOH B 39 639 75 HOH HOH . 
T 7 HOH B 40 640 58 HOH HOH . 
T 7 HOH B 41 641 38 HOH HOH . 
T 7 HOH B 42 642 52 HOH HOH . 
T 7 HOH B 43 643 78 HOH HOH . 
T 7 HOH B 44 644 4 HOH HOH . 
T 7 HOH B 45 645 76 HOH HOH . 
T 7 HOH B 46 646 80 HOH HOH . 
T 7 HOH B 47 647 77 HOH HOH . 
T 7 HOH B 48 648 36 HOH HOH . 
T 7 HOH B 49 649 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 91.953 -11.214 21.107 1 41.31 ? C1 GOL 504 A 1 
HETATM 2 O O1 GOL . . . F 5 92.862 -10.405 20.346 1 38.94 ? O1 GOL 504 A 1 
HETATM 3 C C2 GOL . . . F 5 91.121 -10.382 22.085 1 41.58 ? C2 GOL 504 A 1 
HETATM 4 O O2 GOL . . . F 5 89.878 -10.033 21.472 1 41.53 ? O2 GOL 504 A 1 
HETATM 5 C C3 GOL . . . F 5 91.821 -9.094 22.494 1 40.97 ? C3 GOL 504 A 1 
HETATM 6 O O3 GOL . . . F 5 91.59 -8.842 23.875 1 40.88 ? O3 GOL 504 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#