data_5E32
#
_model_server_result.job_id            3bC9yZJROxRihhdw1CPVfQ 
_model_server_result.datetime_utc      '2024-10-17 03:32:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e32 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1003}' 
#
_entry.id    5E32 
#
_exptl.entry_id    5E32 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5E32 
_cell.length_a            133.046 
_cell.length_b            133.046 
_cell.length_c            134.693 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E32 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 66.523 -115.221216 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 133.046 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 46 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 59 A CYS 64 1_555 A SG CYS 71 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 A SG CYS 94 A CYS 97 1_555 A SG CYS 138 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 27 A ASN 33 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 166 A ASN 167 1_555 D C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale3 A ND2 ASN 289 A ASN 289 1_555 E C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5E32 
_atom_sites.fract_transf_matrix[1][1]    0.007516 
_atom_sites.fract_transf_matrix[1][2]    0.004339 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008679 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007424 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 1001 1001 NAG NAG . 
D 3 NAG A 1 1002 2003 NAG NAG . 
E 3 NAG A 1 1003 2004 NAG NAG . 
F 4 HOH A 1 1101 92 HOH HOH . 
F 4 HOH A 2 1102 81 HOH HOH . 
F 4 HOH A 3 1103 17 HOH HOH . 
F 4 HOH A 4 1104 11 HOH HOH . 
F 4 HOH A 5 1105 123 HOH HOH . 
F 4 HOH A 6 1106 39 HOH HOH . 
F 4 HOH A 7 1107 32 HOH HOH . 
F 4 HOH A 8 1108 82 HOH HOH . 
F 4 HOH A 9 1109 15 HOH HOH . 
F 4 HOH A 10 1110 74 HOH HOH . 
F 4 HOH A 11 1111 72 HOH HOH . 
F 4 HOH A 12 1112 30 HOH HOH . 
F 4 HOH A 13 1113 22 HOH HOH . 
F 4 HOH A 14 1114 5 HOH HOH . 
F 4 HOH A 15 1115 31 HOH HOH . 
F 4 HOH A 16 1116 19 HOH HOH . 
F 4 HOH A 17 1117 95 HOH HOH . 
F 4 HOH A 18 1118 66 HOH HOH . 
F 4 HOH A 19 1119 33 HOH HOH . 
F 4 HOH A 20 1120 41 HOH HOH . 
F 4 HOH A 21 1121 52 HOH HOH . 
F 4 HOH A 22 1122 23 HOH HOH . 
F 4 HOH A 23 1123 40 HOH HOH . 
F 4 HOH A 24 1124 125 HOH HOH . 
F 4 HOH A 25 1125 64 HOH HOH . 
F 4 HOH A 26 1126 105 HOH HOH . 
F 4 HOH A 27 1127 44 HOH HOH . 
F 4 HOH A 28 1128 75 HOH HOH . 
F 4 HOH A 29 1129 130 HOH HOH . 
F 4 HOH A 30 1130 3 HOH HOH . 
F 4 HOH A 31 1131 111 HOH HOH . 
F 4 HOH A 32 1132 128 HOH HOH . 
F 4 HOH A 33 1133 10 HOH HOH . 
F 4 HOH A 34 1134 28 HOH HOH . 
F 4 HOH A 35 1135 69 HOH HOH . 
F 4 HOH A 36 1136 78 HOH HOH . 
F 4 HOH A 37 1137 1 HOH HOH . 
F 4 HOH A 38 1138 13 HOH HOH . 
F 4 HOH A 39 1139 58 HOH HOH . 
F 4 HOH A 40 1140 127 HOH HOH . 
F 4 HOH A 41 1141 79 HOH HOH . 
F 4 HOH A 42 1142 2 HOH HOH . 
F 4 HOH A 43 1143 24 HOH HOH . 
F 4 HOH A 44 1144 108 HOH HOH . 
F 4 HOH A 45 1145 46 HOH HOH . 
F 4 HOH A 46 1146 103 HOH HOH . 
F 4 HOH A 47 1147 122 HOH HOH . 
F 4 HOH A 48 1148 48 HOH HOH . 
F 4 HOH A 49 1149 119 HOH HOH . 
F 4 HOH A 50 1150 60 HOH HOH . 
F 4 HOH A 51 1151 25 HOH HOH . 
F 4 HOH A 52 1152 100 HOH HOH . 
F 4 HOH A 53 1153 18 HOH HOH . 
F 4 HOH A 54 1154 67 HOH HOH . 
F 4 HOH A 55 1155 86 HOH HOH . 
F 4 HOH A 56 1156 110 HOH HOH . 
F 4 HOH A 57 1157 65 HOH HOH . 
F 4 HOH A 58 1158 121 HOH HOH . 
F 4 HOH A 59 1159 76 HOH HOH . 
F 4 HOH A 60 1160 80 HOH HOH . 
F 4 HOH A 61 1161 36 HOH HOH . 
F 4 HOH A 62 1162 43 HOH HOH . 
F 4 HOH A 63 1163 101 HOH HOH . 
F 4 HOH A 64 1164 50 HOH HOH . 
F 4 HOH A 65 1165 51 HOH HOH . 
F 4 HOH A 66 1166 71 HOH HOH . 
F 4 HOH A 67 1167 118 HOH HOH . 
F 4 HOH A 68 1168 70 HOH HOH . 
F 4 HOH A 69 1169 138 HOH HOH . 
F 4 HOH A 70 1170 20 HOH HOH . 
F 4 HOH A 71 1171 96 HOH HOH . 
F 4 HOH A 72 1172 107 HOH HOH . 
F 4 HOH A 73 1173 62 HOH HOH . 
F 4 HOH A 74 1174 112 HOH HOH . 
F 4 HOH A 75 1175 59 HOH HOH . 
F 4 HOH A 76 1176 56 HOH HOH . 
F 4 HOH A 77 1177 84 HOH HOH . 
F 4 HOH A 78 1178 132 HOH HOH . 
F 4 HOH A 79 1179 4 HOH HOH . 
F 4 HOH A 80 1180 53 HOH HOH . 
F 4 HOH A 81 1181 137 HOH HOH . 
F 4 HOH A 82 1182 116 HOH HOH . 
F 4 HOH A 83 1183 90 HOH HOH . 
F 4 HOH A 84 1184 114 HOH HOH . 
F 4 HOH A 85 1185 89 HOH HOH . 
F 4 HOH A 86 1186 49 HOH HOH . 
F 4 HOH A 87 1187 109 HOH HOH . 
F 4 HOH A 88 1188 12 HOH HOH . 
F 4 HOH A 89 1189 99 HOH HOH . 
F 4 HOH A 90 1190 104 HOH HOH . 
F 4 HOH A 91 1191 117 HOH HOH . 
F 4 HOH A 92 1192 135 HOH HOH . 
F 4 HOH A 93 1193 27 HOH HOH . 
F 4 HOH A 94 1194 126 HOH HOH . 
F 4 HOH A 95 1195 98 HOH HOH . 
F 4 HOH A 96 1196 115 HOH HOH . 
F 4 HOH A 97 1197 102 HOH HOH . 
F 4 HOH A 98 1198 131 HOH HOH . 
F 4 HOH A 99 1199 61 HOH HOH . 
F 4 HOH A 100 1200 37 HOH HOH . 
F 4 HOH A 101 1201 21 HOH HOH . 
F 4 HOH A 102 1202 124 HOH HOH . 
F 4 HOH A 103 1203 6 HOH HOH . 
F 4 HOH A 104 1204 129 HOH HOH . 
F 4 HOH A 105 1205 120 HOH HOH . 
F 4 HOH A 106 1206 139 HOH HOH . 
F 4 HOH A 107 1207 113 HOH HOH . 
F 4 HOH A 108 1208 73 HOH HOH . 
F 4 HOH A 109 1209 29 HOH HOH . 
F 4 HOH A 110 1210 87 HOH HOH . 
F 4 HOH A 111 1211 106 HOH HOH . 
G 4 HOH B 1 201 83 HOH HOH . 
G 4 HOH B 2 202 9 HOH HOH . 
G 4 HOH B 3 203 55 HOH HOH . 
G 4 HOH B 4 204 8 HOH HOH . 
G 4 HOH B 5 205 47 HOH HOH . 
G 4 HOH B 6 206 45 HOH HOH . 
G 4 HOH B 7 207 14 HOH HOH . 
G 4 HOH B 8 208 16 HOH HOH . 
G 4 HOH B 9 209 54 HOH HOH . 
G 4 HOH B 10 210 26 HOH HOH . 
G 4 HOH B 11 211 134 HOH HOH . 
G 4 HOH B 12 212 34 HOH HOH . 
G 4 HOH B 13 213 68 HOH HOH . 
G 4 HOH B 14 214 38 HOH HOH . 
G 4 HOH B 15 215 91 HOH HOH . 
G 4 HOH B 16 216 63 HOH HOH . 
G 4 HOH B 17 217 77 HOH HOH . 
G 4 HOH B 18 218 7 HOH HOH . 
G 4 HOH B 19 219 42 HOH HOH . 
G 4 HOH B 20 220 93 HOH HOH . 
G 4 HOH B 21 221 85 HOH HOH . 
G 4 HOH B 22 222 88 HOH HOH . 
G 4 HOH B 23 223 94 HOH HOH . 
G 4 HOH B 24 224 57 HOH HOH . 
G 4 HOH B 25 225 35 HOH HOH . 
G 4 HOH B 26 226 136 HOH HOH . 
G 4 HOH B 27 227 133 HOH HOH . 
G 4 HOH B 28 228 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 35.977 -49.356 41.1 1 90.64 ? C1 NAG 1003 A 1 
HETATM 2 C C2 NAG . . . E 3 34.705 -49.954 40.5 1 93.55 ? C2 NAG 1003 A 1 
HETATM 3 C C3 NAG . . . E 3 33.491 -49.574 41.361 1 96.27 ? C3 NAG 1003 A 1 
HETATM 4 C C4 NAG . . . E 3 33.743 -49.938 42.825 1 101.26 ? C4 NAG 1003 A 1 
HETATM 5 C C5 NAG . . . E 3 35.04 -49.309 43.303 1 98.01 ? C5 NAG 1003 A 1 
HETATM 6 C C6 NAG . . . E 3 35.409 -49.695 44.714 1 95.58 ? C6 NAG 1003 A 1 
HETATM 7 C C7 NAG . . . E 3 34.264 -50.379 38.127 1 88.84 ? C7 NAG 1003 A 1 
HETATM 8 C C8 NAG . . . E 3 34.099 -49.76 36.764 1 82.92 ? C8 NAG 1003 A 1 
HETATM 9 N N2 NAG . . . E 3 34.502 -49.533 39.126 1 95.03 ? N2 NAG 1003 A 1 
HETATM 10 O O3 NAG . . . E 3 32.341 -50.243 40.874 1 98.59 ? O3 NAG 1003 A 1 
HETATM 11 O O4 NAG . . . E 3 32.667 -49.472 43.639 1 102.96 ? O4 NAG 1003 A 1 
HETATM 12 O O5 NAG . . . E 3 36.132 -49.747 42.463 1 97.72 ? O5 NAG 1003 A 1 
HETATM 13 O O6 NAG . . . E 3 36.224 -48.701 45.32 1 102.37 ? O6 NAG 1003 A 1 
HETATM 14 O O7 NAG . . . E 3 34.18 -51.597 38.292 1 87.25 ? O7 NAG 1003 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#