data_5E3B
#
_model_server_result.job_id            hVct5qgzGZRCfDABIkKPFA 
_model_server_result.datetime_utc      '2024-11-26 01:39:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e3b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    5E3B 
#
_exptl.entry_id    5E3B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5E3B 
_cell.length_a            103.819 
_cell.length_b            103.819 
_cell.length_c            33.254 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E3B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 158 A GLU 138 1_555 C NA NA . A NA 1001 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc2 A O VAL 174 A VAL 154 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? 
metalc ? metalc3 A OD2 ASP 176 A ASP 156 1_555 C NA NA . A NA 1001 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc4 A OD2 ASP 176 A ASP 156 1_555 C NA NA . A NA 1001 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc5 B NA NA . A NA 1000 1_555 E O HOH . A HOH 1155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc6 C NA NA . A NA 1001 1_555 E O HOH . A HOH 1155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5E3B 
_atom_sites.fract_transf_matrix[1][1]    0.009632 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009632 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030072 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 1000 1000 NA NA . 
C 2 NA A 1 1001 1001 NA NA . 
D 3 EDO A 1 1002 1002 EDO EDO . 
E 4 HOH A 1 1101 1125 HOH HOH . 
E 4 HOH A 2 1102 1062 HOH HOH . 
E 4 HOH A 3 1103 1047 HOH HOH . 
E 4 HOH A 4 1104 1052 HOH HOH . 
E 4 HOH A 5 1105 1025 HOH HOH . 
E 4 HOH A 6 1106 1101 HOH HOH . 
E 4 HOH A 7 1107 1084 HOH HOH . 
E 4 HOH A 8 1108 1072 HOH HOH . 
E 4 HOH A 9 1109 1156 HOH HOH . 
E 4 HOH A 10 1110 1115 HOH HOH . 
E 4 HOH A 11 1111 1077 HOH HOH . 
E 4 HOH A 12 1112 1074 HOH HOH . 
E 4 HOH A 13 1113 1085 HOH HOH . 
E 4 HOH A 14 1114 1091 HOH HOH . 
E 4 HOH A 15 1115 1068 HOH HOH . 
E 4 HOH A 16 1116 1122 HOH HOH . 
E 4 HOH A 17 1117 1027 HOH HOH . 
E 4 HOH A 18 1118 1014 HOH HOH . 
E 4 HOH A 19 1119 1037 HOH HOH . 
E 4 HOH A 20 1120 1022 HOH HOH . 
E 4 HOH A 21 1121 1141 HOH HOH . 
E 4 HOH A 22 1122 1142 HOH HOH . 
E 4 HOH A 23 1123 1146 HOH HOH . 
E 4 HOH A 24 1124 1086 HOH HOH . 
E 4 HOH A 25 1125 1017 HOH HOH . 
E 4 HOH A 26 1126 1071 HOH HOH . 
E 4 HOH A 27 1127 1044 HOH HOH . 
E 4 HOH A 28 1128 1015 HOH HOH . 
E 4 HOH A 29 1129 1007 HOH HOH . 
E 4 HOH A 30 1130 1032 HOH HOH . 
E 4 HOH A 31 1131 1013 HOH HOH . 
E 4 HOH A 32 1132 1120 HOH HOH . 
E 4 HOH A 33 1133 1038 HOH HOH . 
E 4 HOH A 34 1134 1042 HOH HOH . 
E 4 HOH A 35 1135 1067 HOH HOH . 
E 4 HOH A 36 1136 1165 HOH HOH . 
E 4 HOH A 37 1137 1148 HOH HOH . 
E 4 HOH A 38 1138 1117 HOH HOH . 
E 4 HOH A 39 1139 1035 HOH HOH . 
E 4 HOH A 40 1140 1006 HOH HOH . 
E 4 HOH A 41 1141 1105 HOH HOH . 
E 4 HOH A 42 1142 1137 HOH HOH . 
E 4 HOH A 43 1143 1011 HOH HOH . 
E 4 HOH A 44 1144 1152 HOH HOH . 
E 4 HOH A 45 1145 1018 HOH HOH . 
E 4 HOH A 46 1146 1028 HOH HOH . 
E 4 HOH A 47 1147 1110 HOH HOH . 
E 4 HOH A 48 1148 1082 HOH HOH . 
E 4 HOH A 49 1149 1016 HOH HOH . 
E 4 HOH A 50 1150 1054 HOH HOH . 
E 4 HOH A 51 1151 1102 HOH HOH . 
E 4 HOH A 52 1152 1008 HOH HOH . 
E 4 HOH A 53 1153 1050 HOH HOH . 
E 4 HOH A 54 1154 1112 HOH HOH . 
E 4 HOH A 55 1155 1046 HOH HOH . 
E 4 HOH A 56 1156 1010 HOH HOH . 
E 4 HOH A 57 1157 1023 HOH HOH . 
E 4 HOH A 58 1158 1031 HOH HOH . 
E 4 HOH A 59 1159 1109 HOH HOH . 
E 4 HOH A 60 1160 1041 HOH HOH . 
E 4 HOH A 61 1161 1026 HOH HOH . 
E 4 HOH A 62 1162 1078 HOH HOH . 
E 4 HOH A 63 1163 1154 HOH HOH . 
E 4 HOH A 64 1164 1024 HOH HOH . 
E 4 HOH A 65 1165 1030 HOH HOH . 
E 4 HOH A 66 1166 1114 HOH HOH . 
E 4 HOH A 67 1167 1034 HOH HOH . 
E 4 HOH A 68 1168 1076 HOH HOH . 
E 4 HOH A 69 1169 1075 HOH HOH . 
E 4 HOH A 70 1170 1070 HOH HOH . 
E 4 HOH A 71 1171 1157 HOH HOH . 
E 4 HOH A 72 1172 1033 HOH HOH . 
E 4 HOH A 73 1173 1138 HOH HOH . 
E 4 HOH A 74 1174 1069 HOH HOH . 
E 4 HOH A 75 1175 1151 HOH HOH . 
E 4 HOH A 76 1176 1079 HOH HOH . 
E 4 HOH A 77 1177 1135 HOH HOH . 
E 4 HOH A 78 1178 1159 HOH HOH . 
E 4 HOH A 79 1179 1163 HOH HOH . 
E 4 HOH A 80 1180 1129 HOH HOH . 
E 4 HOH A 81 1181 1012 HOH HOH . 
E 4 HOH A 82 1182 1061 HOH HOH . 
E 4 HOH A 83 1183 1095 HOH HOH . 
E 4 HOH A 84 1184 1090 HOH HOH . 
E 4 HOH A 85 1185 1136 HOH HOH . 
E 4 HOH A 86 1186 1081 HOH HOH . 
E 4 HOH A 87 1187 1063 HOH HOH . 
E 4 HOH A 88 1188 1088 HOH HOH . 
E 4 HOH A 89 1189 1100 HOH HOH . 
E 4 HOH A 90 1190 1057 HOH HOH . 
E 4 HOH A 91 1191 1155 HOH HOH . 
E 4 HOH A 92 1192 1009 HOH HOH . 
E 4 HOH A 93 1193 1124 HOH HOH . 
E 4 HOH A 94 1194 1073 HOH HOH . 
E 4 HOH A 95 1195 1056 HOH HOH . 
E 4 HOH A 96 1196 1058 HOH HOH . 
E 4 HOH A 97 1197 1113 HOH HOH . 
E 4 HOH A 98 1198 1127 HOH HOH . 
E 4 HOH A 99 1199 1087 HOH HOH . 
E 4 HOH A 100 1200 1158 HOH HOH . 
E 4 HOH A 101 1201 1055 HOH HOH . 
E 4 HOH A 102 1202 1134 HOH HOH . 
E 4 HOH A 103 1203 1040 HOH HOH . 
E 4 HOH A 104 1204 1164 HOH HOH . 
E 4 HOH A 105 1205 1003 HOH HOH . 
E 4 HOH A 106 1206 1139 HOH HOH . 
E 4 HOH A 107 1207 1160 HOH HOH . 
E 4 HOH A 108 1208 1130 HOH HOH . 
E 4 HOH A 109 1209 1064 HOH HOH . 
E 4 HOH A 110 1210 1053 HOH HOH . 
E 4 HOH A 111 1211 1093 HOH HOH . 
E 4 HOH A 112 1212 1019 HOH HOH . 
E 4 HOH A 113 1213 1005 HOH HOH . 
E 4 HOH A 114 1214 1066 HOH HOH . 
E 4 HOH A 115 1215 1145 HOH HOH . 
E 4 HOH A 116 1216 1108 HOH HOH . 
E 4 HOH A 117 1217 1048 HOH HOH . 
E 4 HOH A 118 1218 1150 HOH HOH . 
E 4 HOH A 119 1219 1149 HOH HOH . 
E 4 HOH A 120 1220 1128 HOH HOH . 
E 4 HOH A 121 1221 1118 HOH HOH . 
E 4 HOH A 122 1222 1133 HOH HOH . 
E 4 HOH A 123 1223 1104 HOH HOH . 
E 4 HOH A 124 1224 1092 HOH HOH . 
E 4 HOH A 125 1225 1111 HOH HOH . 
E 4 HOH A 126 1226 1036 HOH HOH . 
E 4 HOH A 127 1227 1051 HOH HOH . 
E 4 HOH A 128 1228 1065 HOH HOH . 
E 4 HOH A 129 1229 1106 HOH HOH . 
E 4 HOH A 130 1230 1119 HOH HOH . 
E 4 HOH A 131 1231 1107 HOH HOH . 
E 4 HOH A 132 1232 1116 HOH HOH . 
E 4 HOH A 133 1233 1021 HOH HOH . 
E 4 HOH A 134 1234 1039 HOH HOH . 
E 4 HOH A 135 1235 1043 HOH HOH . 
E 4 HOH A 136 1236 1132 HOH HOH . 
E 4 HOH A 137 1237 1080 HOH HOH . 
E 4 HOH A 138 1238 1097 HOH HOH . 
E 4 HOH A 139 1239 1161 HOH HOH . 
E 4 HOH A 140 1240 1140 HOH HOH . 
E 4 HOH A 141 1241 1144 HOH HOH . 
E 4 HOH A 142 1242 1098 HOH HOH . 
E 4 HOH A 143 1243 1123 HOH HOH . 
E 4 HOH A 144 1244 1143 HOH HOH . 
E 4 HOH A 145 1245 1103 HOH HOH . 
E 4 HOH A 146 1246 1045 HOH HOH . 
E 4 HOH A 147 1247 1162 HOH HOH . 
E 4 HOH A 148 1248 1060 HOH HOH . 
E 4 HOH A 149 1249 1096 HOH HOH . 
E 4 HOH A 150 1250 1131 HOH HOH . 
E 4 HOH A 151 1251 1089 HOH HOH . 
E 4 HOH A 152 1252 1094 HOH HOH . 
E 4 HOH A 153 1253 1029 HOH HOH . 
E 4 HOH A 154 1254 1126 HOH HOH . 
E 4 HOH A 155 1255 1049 HOH HOH . 
E 4 HOH A 156 1256 1153 HOH HOH . 
E 4 HOH A 157 1257 1059 HOH HOH . 
E 4 HOH A 158 1258 1083 HOH HOH . 
E 4 HOH A 159 1259 1004 HOH HOH . 
E 4 HOH A 160 1260 1121 HOH HOH . 
E 4 HOH A 161 1261 1147 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               19.753 
_atom_site.Cartn_y               21.351 
_atom_site.Cartn_z               -4.565 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#