data_5E3B # _model_server_result.job_id EKveT6vcOW8h35qdn-sgcw _model_server_result.datetime_utc '2024-11-26 02:03:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 5E3B # _exptl.entry_id 5E3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E3B _cell.length_a 103.819 _cell.length_b 103.819 _cell.length_c 33.254 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 158 A GLU 138 1_555 C NA NA . A NA 1001 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc2 A O VAL 174 A VAL 154 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc3 A OD2 ASP 176 A ASP 156 1_555 C NA NA . A NA 1001 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc4 A OD2 ASP 176 A ASP 156 1_555 C NA NA . A NA 1001 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 B NA NA . A NA 1000 1_555 E O HOH . A HOH 1155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc6 C NA NA . A NA 1001 1_555 E O HOH . A HOH 1155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5E3B _atom_sites.fract_transf_matrix[1][1] 0.009632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1000 1000 NA NA . C 2 NA A 1 1001 1001 NA NA . D 3 EDO A 1 1002 1002 EDO EDO . E 4 HOH A 1 1101 1125 HOH HOH . E 4 HOH A 2 1102 1062 HOH HOH . E 4 HOH A 3 1103 1047 HOH HOH . E 4 HOH A 4 1104 1052 HOH HOH . E 4 HOH A 5 1105 1025 HOH HOH . E 4 HOH A 6 1106 1101 HOH HOH . E 4 HOH A 7 1107 1084 HOH HOH . E 4 HOH A 8 1108 1072 HOH HOH . E 4 HOH A 9 1109 1156 HOH HOH . E 4 HOH A 10 1110 1115 HOH HOH . E 4 HOH A 11 1111 1077 HOH HOH . E 4 HOH A 12 1112 1074 HOH HOH . E 4 HOH A 13 1113 1085 HOH HOH . E 4 HOH A 14 1114 1091 HOH HOH . E 4 HOH A 15 1115 1068 HOH HOH . E 4 HOH A 16 1116 1122 HOH HOH . E 4 HOH A 17 1117 1027 HOH HOH . E 4 HOH A 18 1118 1014 HOH HOH . E 4 HOH A 19 1119 1037 HOH HOH . E 4 HOH A 20 1120 1022 HOH HOH . E 4 HOH A 21 1121 1141 HOH HOH . E 4 HOH A 22 1122 1142 HOH HOH . E 4 HOH A 23 1123 1146 HOH HOH . E 4 HOH A 24 1124 1086 HOH HOH . E 4 HOH A 25 1125 1017 HOH HOH . E 4 HOH A 26 1126 1071 HOH HOH . E 4 HOH A 27 1127 1044 HOH HOH . E 4 HOH A 28 1128 1015 HOH HOH . E 4 HOH A 29 1129 1007 HOH HOH . E 4 HOH A 30 1130 1032 HOH HOH . E 4 HOH A 31 1131 1013 HOH HOH . E 4 HOH A 32 1132 1120 HOH HOH . E 4 HOH A 33 1133 1038 HOH HOH . E 4 HOH A 34 1134 1042 HOH HOH . E 4 HOH A 35 1135 1067 HOH HOH . E 4 HOH A 36 1136 1165 HOH HOH . E 4 HOH A 37 1137 1148 HOH HOH . E 4 HOH A 38 1138 1117 HOH HOH . E 4 HOH A 39 1139 1035 HOH HOH . E 4 HOH A 40 1140 1006 HOH HOH . E 4 HOH A 41 1141 1105 HOH HOH . E 4 HOH A 42 1142 1137 HOH HOH . E 4 HOH A 43 1143 1011 HOH HOH . E 4 HOH A 44 1144 1152 HOH HOH . E 4 HOH A 45 1145 1018 HOH HOH . E 4 HOH A 46 1146 1028 HOH HOH . E 4 HOH A 47 1147 1110 HOH HOH . E 4 HOH A 48 1148 1082 HOH HOH . E 4 HOH A 49 1149 1016 HOH HOH . E 4 HOH A 50 1150 1054 HOH HOH . E 4 HOH A 51 1151 1102 HOH HOH . E 4 HOH A 52 1152 1008 HOH HOH . E 4 HOH A 53 1153 1050 HOH HOH . E 4 HOH A 54 1154 1112 HOH HOH . E 4 HOH A 55 1155 1046 HOH HOH . E 4 HOH A 56 1156 1010 HOH HOH . E 4 HOH A 57 1157 1023 HOH HOH . E 4 HOH A 58 1158 1031 HOH HOH . E 4 HOH A 59 1159 1109 HOH HOH . E 4 HOH A 60 1160 1041 HOH HOH . E 4 HOH A 61 1161 1026 HOH HOH . E 4 HOH A 62 1162 1078 HOH HOH . E 4 HOH A 63 1163 1154 HOH HOH . E 4 HOH A 64 1164 1024 HOH HOH . E 4 HOH A 65 1165 1030 HOH HOH . E 4 HOH A 66 1166 1114 HOH HOH . E 4 HOH A 67 1167 1034 HOH HOH . E 4 HOH A 68 1168 1076 HOH HOH . E 4 HOH A 69 1169 1075 HOH HOH . E 4 HOH A 70 1170 1070 HOH HOH . E 4 HOH A 71 1171 1157 HOH HOH . E 4 HOH A 72 1172 1033 HOH HOH . E 4 HOH A 73 1173 1138 HOH HOH . E 4 HOH A 74 1174 1069 HOH HOH . E 4 HOH A 75 1175 1151 HOH HOH . E 4 HOH A 76 1176 1079 HOH HOH . E 4 HOH A 77 1177 1135 HOH HOH . E 4 HOH A 78 1178 1159 HOH HOH . E 4 HOH A 79 1179 1163 HOH HOH . E 4 HOH A 80 1180 1129 HOH HOH . E 4 HOH A 81 1181 1012 HOH HOH . E 4 HOH A 82 1182 1061 HOH HOH . E 4 HOH A 83 1183 1095 HOH HOH . E 4 HOH A 84 1184 1090 HOH HOH . E 4 HOH A 85 1185 1136 HOH HOH . E 4 HOH A 86 1186 1081 HOH HOH . E 4 HOH A 87 1187 1063 HOH HOH . E 4 HOH A 88 1188 1088 HOH HOH . E 4 HOH A 89 1189 1100 HOH HOH . E 4 HOH A 90 1190 1057 HOH HOH . E 4 HOH A 91 1191 1155 HOH HOH . E 4 HOH A 92 1192 1009 HOH HOH . E 4 HOH A 93 1193 1124 HOH HOH . E 4 HOH A 94 1194 1073 HOH HOH . E 4 HOH A 95 1195 1056 HOH HOH . E 4 HOH A 96 1196 1058 HOH HOH . E 4 HOH A 97 1197 1113 HOH HOH . E 4 HOH A 98 1198 1127 HOH HOH . E 4 HOH A 99 1199 1087 HOH HOH . E 4 HOH A 100 1200 1158 HOH HOH . E 4 HOH A 101 1201 1055 HOH HOH . E 4 HOH A 102 1202 1134 HOH HOH . E 4 HOH A 103 1203 1040 HOH HOH . E 4 HOH A 104 1204 1164 HOH HOH . E 4 HOH A 105 1205 1003 HOH HOH . E 4 HOH A 106 1206 1139 HOH HOH . E 4 HOH A 107 1207 1160 HOH HOH . E 4 HOH A 108 1208 1130 HOH HOH . E 4 HOH A 109 1209 1064 HOH HOH . E 4 HOH A 110 1210 1053 HOH HOH . E 4 HOH A 111 1211 1093 HOH HOH . E 4 HOH A 112 1212 1019 HOH HOH . E 4 HOH A 113 1213 1005 HOH HOH . E 4 HOH A 114 1214 1066 HOH HOH . E 4 HOH A 115 1215 1145 HOH HOH . E 4 HOH A 116 1216 1108 HOH HOH . E 4 HOH A 117 1217 1048 HOH HOH . E 4 HOH A 118 1218 1150 HOH HOH . E 4 HOH A 119 1219 1149 HOH HOH . E 4 HOH A 120 1220 1128 HOH HOH . E 4 HOH A 121 1221 1118 HOH HOH . E 4 HOH A 122 1222 1133 HOH HOH . E 4 HOH A 123 1223 1104 HOH HOH . E 4 HOH A 124 1224 1092 HOH HOH . E 4 HOH A 125 1225 1111 HOH HOH . E 4 HOH A 126 1226 1036 HOH HOH . E 4 HOH A 127 1227 1051 HOH HOH . E 4 HOH A 128 1228 1065 HOH HOH . E 4 HOH A 129 1229 1106 HOH HOH . E 4 HOH A 130 1230 1119 HOH HOH . E 4 HOH A 131 1231 1107 HOH HOH . E 4 HOH A 132 1232 1116 HOH HOH . E 4 HOH A 133 1233 1021 HOH HOH . E 4 HOH A 134 1234 1039 HOH HOH . E 4 HOH A 135 1235 1043 HOH HOH . E 4 HOH A 136 1236 1132 HOH HOH . E 4 HOH A 137 1237 1080 HOH HOH . E 4 HOH A 138 1238 1097 HOH HOH . E 4 HOH A 139 1239 1161 HOH HOH . E 4 HOH A 140 1240 1140 HOH HOH . E 4 HOH A 141 1241 1144 HOH HOH . E 4 HOH A 142 1242 1098 HOH HOH . E 4 HOH A 143 1243 1123 HOH HOH . E 4 HOH A 144 1244 1143 HOH HOH . E 4 HOH A 145 1245 1103 HOH HOH . E 4 HOH A 146 1246 1045 HOH HOH . E 4 HOH A 147 1247 1162 HOH HOH . E 4 HOH A 148 1248 1060 HOH HOH . E 4 HOH A 149 1249 1096 HOH HOH . E 4 HOH A 150 1250 1131 HOH HOH . E 4 HOH A 151 1251 1089 HOH HOH . E 4 HOH A 152 1252 1094 HOH HOH . E 4 HOH A 153 1253 1029 HOH HOH . E 4 HOH A 154 1254 1126 HOH HOH . E 4 HOH A 155 1255 1049 HOH HOH . E 4 HOH A 156 1256 1153 HOH HOH . E 4 HOH A 157 1257 1059 HOH HOH . E 4 HOH A 158 1258 1083 HOH HOH . E 4 HOH A 159 1259 1004 HOH HOH . E 4 HOH A 160 1260 1121 HOH HOH . E 4 HOH A 161 1261 1147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 19.314 43.151 1.78 1 17.97 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . D 3 18.21 42.47 1.214 1 14.54 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . D 3 20.052 43.961 0.727 1 19.27 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . D 3 19.27 45.029 0.185 1 17.05 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #