data_5E3G # _model_server_result.job_id sa5C-S9DZwdJiyswfyDq0Q _model_server_result.datetime_utc '2024-10-19 02:21:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5E3G # _exptl.entry_id 5E3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.176 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-thioxo-2,3,7,9-tetrahydro-1H-purine-6,8-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5E3G _cell.length_a 60.859 _cell.length_b 60.859 _cell.length_c 62.996 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N4 O2 S' _chem_comp.formula_weight 184.176 _chem_comp.id 5JQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-thioxo-2,3,7,9-tetrahydro-1H-purine-6,8-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C5 5JQ doub 1 n n N2 C1 5JQ sing 2 n n N2 C3 5JQ sing 3 n n C5 C1 5JQ sing 4 n n C5 N4 5JQ sing 5 n n O1 C3 5JQ doub 6 n n C1 C2 5JQ doub 7 n n C3 N1 5JQ sing 8 n n N4 C4 5JQ sing 9 n n C2 N1 5JQ sing 10 n n C2 N3 5JQ sing 11 n n C4 N3 5JQ sing 12 n n C4 S1 5JQ doub 13 n n N4 H1 5JQ sing 14 n n N3 H2 5JQ sing 15 n n N2 H3 5JQ sing 16 n n N1 H4 5JQ sing 17 n n # _atom_sites.entry_id 5E3G _atom_sites.fract_transf_matrix[1][1] 0.016431 _atom_sites.fract_transf_matrix[1][2] 0.009487 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5JQ A 1 801 1 5JQ PDB . C 3 NO3 A 1 802 1 NO3 NO3 . D 4 HOH A 1 901 41 HOH HOH . D 4 HOH A 2 902 25 HOH HOH . D 4 HOH A 3 903 61 HOH HOH . D 4 HOH A 4 904 17 HOH HOH . D 4 HOH A 5 905 8 HOH HOH . D 4 HOH A 6 906 66 HOH HOH . D 4 HOH A 7 907 23 HOH HOH . D 4 HOH A 8 908 2 HOH HOH . D 4 HOH A 9 909 40 HOH HOH . D 4 HOH A 10 910 53 HOH HOH . D 4 HOH A 11 911 30 HOH HOH . D 4 HOH A 12 912 6 HOH HOH . D 4 HOH A 13 913 16 HOH HOH . D 4 HOH A 14 914 9 HOH HOH . D 4 HOH A 15 915 13 HOH HOH . D 4 HOH A 16 916 55 HOH HOH . D 4 HOH A 17 917 5 HOH HOH . D 4 HOH A 18 918 14 HOH HOH . D 4 HOH A 19 919 44 HOH HOH . D 4 HOH A 20 920 90 HOH HOH . D 4 HOH A 21 921 22 HOH HOH . D 4 HOH A 22 922 15 HOH HOH . D 4 HOH A 23 923 71 HOH HOH . D 4 HOH A 24 924 47 HOH HOH . D 4 HOH A 25 925 18 HOH HOH . D 4 HOH A 26 926 38 HOH HOH . D 4 HOH A 27 927 52 HOH HOH . D 4 HOH A 28 928 43 HOH HOH . D 4 HOH A 29 929 37 HOH HOH . D 4 HOH A 30 930 7 HOH HOH . D 4 HOH A 31 931 45 HOH HOH . D 4 HOH A 32 932 35 HOH HOH . D 4 HOH A 33 933 27 HOH HOH . D 4 HOH A 34 934 49 HOH HOH . D 4 HOH A 35 935 21 HOH HOH . D 4 HOH A 36 936 54 HOH HOH . D 4 HOH A 37 937 77 HOH HOH . D 4 HOH A 38 938 3 HOH HOH . D 4 HOH A 39 939 4 HOH HOH . D 4 HOH A 40 940 36 HOH HOH . D 4 HOH A 41 941 11 HOH HOH . D 4 HOH A 42 942 10 HOH HOH . D 4 HOH A 43 943 60 HOH HOH . D 4 HOH A 44 944 64 HOH HOH . D 4 HOH A 45 945 26 HOH HOH . D 4 HOH A 46 946 24 HOH HOH . D 4 HOH A 47 947 19 HOH HOH . D 4 HOH A 48 948 12 HOH HOH . D 4 HOH A 49 949 28 HOH HOH . D 4 HOH A 50 950 1 HOH HOH . D 4 HOH A 51 951 32 HOH HOH . D 4 HOH A 52 952 63 HOH HOH . D 4 HOH A 53 953 33 HOH HOH . D 4 HOH A 54 954 65 HOH HOH . D 4 HOH A 55 955 69 HOH HOH . D 4 HOH A 56 956 31 HOH HOH . D 4 HOH A 57 957 82 HOH HOH . D 4 HOH A 58 958 50 HOH HOH . D 4 HOH A 59 959 29 HOH HOH . D 4 HOH A 60 960 39 HOH HOH . D 4 HOH A 61 961 42 HOH HOH . D 4 HOH A 62 962 81 HOH HOH . D 4 HOH A 63 963 20 HOH HOH . D 4 HOH A 64 964 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5JQ . . . B 2 12.538 0.978 -5.992 0.75 59.28 ? C2 5JQ 801 A 1 HETATM 2 C C3 5JQ . . . B 2 10.799 0.534 -7.135 0.75 61.05 ? C3 5JQ 801 A 1 HETATM 3 C C4 5JQ . . . B 2 14.83 1.344 -5.379 0.75 62.6 ? C4 5JQ 801 A 1 HETATM 4 C C5 5JQ . . . B 2 14.234 0.746 -7.545 0.75 48.94 ? C5 5JQ 801 A 1 HETATM 5 O O2 5JQ . . . B 2 14.572 0.46 -8.823 0.75 40.65 ? O2 5JQ 801 A 1 HETATM 6 N N4 5JQ . . . B 2 15.177 1.061 -6.642 0.75 58.36 ? N4 5JQ 801 A 1 HETATM 7 S S1 5JQ . . . B 2 16.024 1.751 -4.188 0.75 67.01 ? S1 5JQ 801 A 1 HETATM 8 N N3 5JQ . . . B 2 13.483 1.307 -5.021 0.75 62.15 ? N3 5JQ 801 A 1 HETATM 9 C C1 5JQ . . . B 2 12.931 0.702 -7.24 0.75 54.68 ? C1 5JQ 801 A 1 HETATM 10 N N2 5JQ . . . B 2 11.841 0.422 -7.96 0.75 51.72 ? N2 5JQ 801 A 1 HETATM 11 O O1 5JQ . . . B 2 9.618 0.353 -7.435 0.75 61.73 ? O1 5JQ 801 A 1 HETATM 12 N N1 5JQ . . . B 2 11.212 0.874 -5.923 0.75 61.29 ? N1 5JQ 801 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #