data_5E4R # _model_server_result.job_id cjaqRoKCt891bx64ed14VQ _model_server_result.datetime_utc '2024-11-16 01:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5E4R # _exptl.entry_id 5E4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.13 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'oxo(propan-2-ylamino)acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E4R _cell.length_a 103.882 _cell.length_b 103.882 _cell.length_c 142.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 191 A ASP 191 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A OD1 ASP 191 A ASP 191 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc3 A OE1 GLU 195 A GLU 195 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 C MG MG . A MG 502 1_555 E O2 40E . A 40E 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 C MG MG . A MG 502 1_555 E O11 40E . A 40E 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc6 C MG MG . A MG 502 1_555 H O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 C MG MG . A MG 502 1_555 H O HOH . A HOH 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 D MG MG . A MG 503 1_555 E O2 40E . A 40E 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc9 D MG MG . A MG 503 1_555 H O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 D MG MG . A MG 503 1_555 H O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc11 D MG MG . A MG 503 1_555 H O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc12 D MG MG . A MG 503 1_555 H O HOH . A HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C5 H9 N O3' _chem_comp.formula_weight 131.13 _chem_comp.id 40E _chem_comp.mon_nstd_flag . _chem_comp.name 'oxo(propan-2-ylamino)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 40E doub 1 n n O12 C1 40E doub 2 n n C2 C1 40E sing 3 n n C2 N3 40E sing 4 n n C1 O11 40E sing 5 n n N3 C4 40E sing 6 n n C4 C42 40E sing 7 n n C4 C41 40E sing 8 n n O11 H1 40E sing 9 n n N3 H2 40E sing 10 n n C4 H3 40E sing 11 n n C41 H4 40E sing 12 n n C41 H5 40E sing 13 n n C41 H6 40E sing 14 n n C42 H7 40E sing 15 n n C42 H8 40E sing 16 n n C42 H9 40E sing 17 n n # _atom_sites.entry_id 5E4R _atom_sites.fract_transf_matrix[1][1] 0.009626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 501 1 NAP NDP . C 3 MG A 1 502 1 MG MG . D 3 MG A 1 503 3 MG MG . E 4 40E A 1 504 402 40E HIO . F 5 EDO A 1 505 1 EDO EDO . G 6 GOL A 1 506 1 GOL GOL . H 7 HOH A 1 601 148 HOH HOH . H 7 HOH A 2 602 83 HOH HOH . H 7 HOH A 3 603 205 HOH HOH . H 7 HOH A 4 604 168 HOH HOH . H 7 HOH A 5 605 249 HOH HOH . H 7 HOH A 6 606 230 HOH HOH . H 7 HOH A 7 607 69 HOH HOH . H 7 HOH A 8 608 166 HOH HOH . H 7 HOH A 9 609 238 HOH HOH . H 7 HOH A 10 610 125 HOH HOH . H 7 HOH A 11 611 221 HOH HOH . H 7 HOH A 12 612 90 HOH HOH . H 7 HOH A 13 613 88 HOH HOH . H 7 HOH A 14 614 194 HOH HOH . H 7 HOH A 15 615 12 HOH HOH . H 7 HOH A 16 616 227 HOH HOH . H 7 HOH A 17 617 173 HOH HOH . H 7 HOH A 18 618 113 HOH HOH . H 7 HOH A 19 619 26 HOH HOH . H 7 HOH A 20 620 30 HOH HOH . H 7 HOH A 21 621 73 HOH HOH . H 7 HOH A 22 622 132 HOH HOH . H 7 HOH A 23 623 150 HOH HOH . H 7 HOH A 24 624 2 HOH HOH . H 7 HOH A 25 625 45 HOH HOH . H 7 HOH A 26 626 185 HOH HOH . H 7 HOH A 27 627 119 HOH HOH . H 7 HOH A 28 628 76 HOH HOH . H 7 HOH A 29 629 97 HOH HOH . H 7 HOH A 30 630 241 HOH HOH . H 7 HOH A 31 631 63 HOH HOH . H 7 HOH A 32 632 43 HOH HOH . H 7 HOH A 33 633 29 HOH HOH . H 7 HOH A 34 634 184 HOH HOH . H 7 HOH A 35 635 155 HOH HOH . H 7 HOH A 36 636 56 HOH HOH . H 7 HOH A 37 637 216 HOH HOH . H 7 HOH A 38 638 118 HOH HOH . H 7 HOH A 39 639 197 HOH HOH . H 7 HOH A 40 640 85 HOH HOH . H 7 HOH A 41 641 152 HOH HOH . H 7 HOH A 42 642 99 HOH HOH . H 7 HOH A 43 643 126 HOH HOH . H 7 HOH A 44 644 49 HOH HOH . H 7 HOH A 45 645 36 HOH HOH . H 7 HOH A 46 646 161 HOH HOH . H 7 HOH A 47 647 147 HOH HOH . H 7 HOH A 48 648 252 HOH HOH . H 7 HOH A 49 649 163 HOH HOH . H 7 HOH A 50 650 60 HOH HOH . H 7 HOH A 51 651 108 HOH HOH . H 7 HOH A 52 652 127 HOH HOH . H 7 HOH A 53 653 181 HOH HOH . H 7 HOH A 54 654 188 HOH HOH . H 7 HOH A 55 655 215 HOH HOH . H 7 HOH A 56 656 72 HOH HOH . H 7 HOH A 57 657 237 HOH HOH . H 7 HOH A 58 658 201 HOH HOH . H 7 HOH A 59 659 96 HOH HOH . H 7 HOH A 60 660 218 HOH HOH . H 7 HOH A 61 661 25 HOH HOH . H 7 HOH A 62 662 95 HOH HOH . H 7 HOH A 63 663 98 HOH HOH . H 7 HOH A 64 664 248 HOH HOH . H 7 HOH A 65 665 189 HOH HOH . H 7 HOH A 66 666 5 HOH HOH . H 7 HOH A 67 667 6 HOH HOH . H 7 HOH A 68 668 177 HOH HOH . H 7 HOH A 69 669 190 HOH HOH . H 7 HOH A 70 670 165 HOH HOH . H 7 HOH A 71 671 74 HOH HOH . H 7 HOH A 72 672 20 HOH HOH . H 7 HOH A 73 673 233 HOH HOH . H 7 HOH A 74 674 130 HOH HOH . H 7 HOH A 75 675 117 HOH HOH . H 7 HOH A 76 676 145 HOH HOH . H 7 HOH A 77 677 23 HOH HOH . H 7 HOH A 78 678 68 HOH HOH . H 7 HOH A 79 679 8 HOH HOH . H 7 HOH A 80 680 243 HOH HOH . H 7 HOH A 81 681 140 HOH HOH . H 7 HOH A 82 682 191 HOH HOH . H 7 HOH A 83 683 115 HOH HOH . H 7 HOH A 84 684 202 HOH HOH . H 7 HOH A 85 685 15 HOH HOH . H 7 HOH A 86 686 253 HOH HOH . H 7 HOH A 87 687 174 HOH HOH . H 7 HOH A 88 688 79 HOH HOH . H 7 HOH A 89 689 4 HOH HOH . H 7 HOH A 90 690 219 HOH HOH . H 7 HOH A 91 691 11 HOH HOH . H 7 HOH A 92 692 204 HOH HOH . H 7 HOH A 93 693 92 HOH HOH . H 7 HOH A 94 694 31 HOH HOH . H 7 HOH A 95 695 52 HOH HOH . H 7 HOH A 96 696 62 HOH HOH . H 7 HOH A 97 697 208 HOH HOH . H 7 HOH A 98 698 107 HOH HOH . H 7 HOH A 99 699 61 HOH HOH . H 7 HOH A 100 700 139 HOH HOH . H 7 HOH A 101 701 198 HOH HOH . H 7 HOH A 102 702 242 HOH HOH . H 7 HOH A 103 703 21 HOH HOH . H 7 HOH A 104 704 154 HOH HOH . H 7 HOH A 105 705 22 HOH HOH . H 7 HOH A 106 706 235 HOH HOH . H 7 HOH A 107 707 187 HOH HOH . H 7 HOH A 108 708 67 HOH HOH . H 7 HOH A 109 709 19 HOH HOH . H 7 HOH A 110 710 129 HOH HOH . H 7 HOH A 111 711 24 HOH HOH . H 7 HOH A 112 712 33 HOH HOH . H 7 HOH A 113 713 146 HOH HOH . H 7 HOH A 114 714 245 HOH HOH . H 7 HOH A 115 715 81 HOH HOH . H 7 HOH A 116 716 34 HOH HOH . H 7 HOH A 117 717 199 HOH HOH . H 7 HOH A 118 718 122 HOH HOH . H 7 HOH A 119 719 37 HOH HOH . H 7 HOH A 120 720 244 HOH HOH . H 7 HOH A 121 721 225 HOH HOH . H 7 HOH A 122 722 134 HOH HOH . H 7 HOH A 123 723 207 HOH HOH . H 7 HOH A 124 724 71 HOH HOH . H 7 HOH A 125 725 35 HOH HOH . H 7 HOH A 126 726 124 HOH HOH . H 7 HOH A 127 727 210 HOH HOH . H 7 HOH A 128 728 50 HOH HOH . H 7 HOH A 129 729 77 HOH HOH . H 7 HOH A 130 730 183 HOH HOH . H 7 HOH A 131 731 160 HOH HOH . H 7 HOH A 132 732 40 HOH HOH . H 7 HOH A 133 733 65 HOH HOH . H 7 HOH A 134 734 228 HOH HOH . H 7 HOH A 135 735 135 HOH HOH . H 7 HOH A 136 736 213 HOH HOH . H 7 HOH A 137 737 14 HOH HOH . H 7 HOH A 138 738 27 HOH HOH . H 7 HOH A 139 739 1 HOH HOH . H 7 HOH A 140 740 231 HOH HOH . H 7 HOH A 141 741 178 HOH HOH . H 7 HOH A 142 742 87 HOH HOH . H 7 HOH A 143 743 46 HOH HOH . H 7 HOH A 144 744 32 HOH HOH . H 7 HOH A 145 745 104 HOH HOH . H 7 HOH A 146 746 80 HOH HOH . H 7 HOH A 147 747 151 HOH HOH . H 7 HOH A 148 748 75 HOH HOH . H 7 HOH A 149 749 206 HOH HOH . H 7 HOH A 150 750 101 HOH HOH . H 7 HOH A 151 751 54 HOH HOH . H 7 HOH A 152 752 234 HOH HOH . H 7 HOH A 153 753 10 HOH HOH . H 7 HOH A 154 754 48 HOH HOH . H 7 HOH A 155 755 110 HOH HOH . H 7 HOH A 156 756 16 HOH HOH . H 7 HOH A 157 757 121 HOH HOH . H 7 HOH A 158 758 38 HOH HOH . H 7 HOH A 159 759 123 HOH HOH . H 7 HOH A 160 760 170 HOH HOH . H 7 HOH A 161 761 211 HOH HOH . H 7 HOH A 162 762 175 HOH HOH . H 7 HOH A 163 763 84 HOH HOH . H 7 HOH A 164 764 180 HOH HOH . H 7 HOH A 165 765 196 HOH HOH . H 7 HOH A 166 766 106 HOH HOH . H 7 HOH A 167 767 222 HOH HOH . H 7 HOH A 168 768 109 HOH HOH . H 7 HOH A 169 769 214 HOH HOH . H 7 HOH A 170 770 172 HOH HOH . H 7 HOH A 171 771 53 HOH HOH . H 7 HOH A 172 772 217 HOH HOH . H 7 HOH A 173 773 131 HOH HOH . H 7 HOH A 174 774 44 HOH HOH . H 7 HOH A 175 775 116 HOH HOH . H 7 HOH A 176 776 47 HOH HOH . H 7 HOH A 177 777 42 HOH HOH . H 7 HOH A 178 778 182 HOH HOH . H 7 HOH A 179 779 91 HOH HOH . H 7 HOH A 180 780 58 HOH HOH . H 7 HOH A 181 781 224 HOH HOH . H 7 HOH A 182 782 13 HOH HOH . H 7 HOH A 183 783 226 HOH HOH . H 7 HOH A 184 784 70 HOH HOH . H 7 HOH A 185 785 223 HOH HOH . H 7 HOH A 186 786 159 HOH HOH . H 7 HOH A 187 787 209 HOH HOH . H 7 HOH A 188 788 156 HOH HOH . H 7 HOH A 189 789 138 HOH HOH . H 7 HOH A 190 790 179 HOH HOH . H 7 HOH A 191 791 137 HOH HOH . H 7 HOH A 192 792 66 HOH HOH . H 7 HOH A 193 793 64 HOH HOH . H 7 HOH A 194 794 232 HOH HOH . H 7 HOH A 195 795 192 HOH HOH . H 7 HOH A 196 796 186 HOH HOH . H 7 HOH A 197 797 59 HOH HOH . H 7 HOH A 198 798 7 HOH HOH . H 7 HOH A 199 799 157 HOH HOH . H 7 HOH A 200 800 3 HOH HOH . H 7 HOH A 201 801 18 HOH HOH . H 7 HOH A 202 802 176 HOH HOH . H 7 HOH A 203 803 162 HOH HOH . H 7 HOH A 204 804 220 HOH HOH . H 7 HOH A 205 805 55 HOH HOH . H 7 HOH A 206 806 17 HOH HOH . H 7 HOH A 207 807 111 HOH HOH . H 7 HOH A 208 808 167 HOH HOH . H 7 HOH A 209 809 149 HOH HOH . H 7 HOH A 210 810 200 HOH HOH . H 7 HOH A 211 811 193 HOH HOH . H 7 HOH A 212 812 240 HOH HOH . H 7 HOH A 213 813 169 HOH HOH . H 7 HOH A 214 814 51 HOH HOH . H 7 HOH A 215 815 136 HOH HOH . H 7 HOH A 216 816 158 HOH HOH . H 7 HOH A 217 817 239 HOH HOH . H 7 HOH A 218 818 229 HOH HOH . H 7 HOH A 219 819 246 HOH HOH . H 7 HOH A 220 820 153 HOH HOH . H 7 HOH A 221 821 89 HOH HOH . H 7 HOH A 222 822 203 HOH HOH . H 7 HOH A 223 823 212 HOH HOH . H 7 HOH A 224 824 250 HOH HOH . H 7 HOH A 225 825 144 HOH HOH . H 7 HOH A 226 826 9 HOH HOH . H 7 HOH A 227 827 171 HOH HOH . H 7 HOH A 228 828 141 HOH HOH . H 7 HOH A 229 829 94 HOH HOH . H 7 HOH A 230 830 195 HOH HOH . H 7 HOH A 231 831 128 HOH HOH . H 7 HOH A 232 832 251 HOH HOH . H 7 HOH A 233 833 236 HOH HOH . H 7 HOH A 234 834 247 HOH HOH . H 7 HOH A 235 835 105 HOH HOH . H 7 HOH A 236 836 114 HOH HOH . H 7 HOH A 237 837 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 40E . . . E 4 20.034 47.789 4.229 1 19.44 ? C1 40E 504 A 1 HETATM 2 O O11 40E . . . E 4 20.358 48.317 5.307 1 17.4 ? O11 40E 504 A 1 HETATM 3 O O12 40E . . . E 4 18.969 48.181 3.612 1 19.45 ? O12 40E 504 A 1 HETATM 4 C C2 40E . . . E 4 20.98 46.789 3.645 1 21.05 ? C2 40E 504 A 1 HETATM 5 O O2 40E . . . E 4 21.747 46.16 4.369 1 17.7 ? O2 40E 504 A 1 HETATM 6 N N3 40E . . . E 4 21.062 46.585 2.31 1 27.52 ? N3 40E 504 A 1 HETATM 7 C C4 40E . . . E 4 20.379 47.335 1.317 1 28.47 ? C4 40E 504 A 1 HETATM 8 C C41 40E . . . E 4 21.339 47.634 0.184 1 28.4 ? C41 40E 504 A 1 HETATM 9 C C42 40E . . . E 4 19.245 46.448 0.82 1 31.38 ? C42 40E 504 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #