data_5E4W # _model_server_result.job_id ru7zjI3rFg-61y_c2tw16w _model_server_result.datetime_utc '2024-11-02 09:45:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 5E4W # _exptl.entry_id 5E4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E4W _cell.length_a 79.592 _cell.length_b 163.668 _cell.length_c 37.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F,I,J,K,N,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1 B,C,E,G,H,L,M,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 42 1_555 A SG CYS 34 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 31 B CYS 42 1_555 B SG CYS 34 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 K O HOH . A HOH 202 1_555 J CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc2 C OE2 GLU 4 C GLU 268 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc3 H CA CA . C CA 401 1_555 M O HOH . C HOH 507 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 H CA CA . C CA 401 1_555 M O HOH . C HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc5 H CA CA . C CA 401 1_555 M O HOH . C HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc6 H CA CA . C CA 401 1_555 M O HOH . C HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc7 D OE2 GLU 4 D GLU 268 1_555 J CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc8 J CA CA . D CA 402 1_555 N O HOH . D HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5E4W _atom_sites.fract_transf_matrix[1][1] 0.012564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL B 1 201 1 GOL GOL . H 5 CA C 1 401 1 CA CA . I 4 GOL D 1 401 2 GOL GOL . J 5 CA D 1 402 2 CA CA . K 6 HOH A 1 201 39 HOH HOH . K 6 HOH A 2 202 9 HOH HOH . K 6 HOH A 3 203 40 HOH HOH . K 6 HOH A 4 204 30 HOH HOH . K 6 HOH A 5 205 19 HOH HOH . K 6 HOH A 6 206 15 HOH HOH . K 6 HOH A 7 207 20 HOH HOH . L 6 HOH B 1 301 35 HOH HOH . L 6 HOH B 2 302 28 HOH HOH . L 6 HOH B 3 303 32 HOH HOH . L 6 HOH B 4 304 33 HOH HOH . L 6 HOH B 5 305 22 HOH HOH . L 6 HOH B 6 306 4 HOH HOH . L 6 HOH B 7 307 12 HOH HOH . L 6 HOH B 8 308 3 HOH HOH . M 6 HOH C 1 501 21 HOH HOH . M 6 HOH C 2 502 5 HOH HOH . M 6 HOH C 3 503 29 HOH HOH . M 6 HOH C 4 504 13 HOH HOH . M 6 HOH C 5 505 36 HOH HOH . M 6 HOH C 6 506 25 HOH HOH . M 6 HOH C 7 507 10 HOH HOH . M 6 HOH C 8 508 27 HOH HOH . M 6 HOH C 9 509 17 HOH HOH . M 6 HOH C 10 510 24 HOH HOH . M 6 HOH C 11 511 41 HOH HOH . M 6 HOH C 12 512 31 HOH HOH . M 6 HOH C 13 513 11 HOH HOH . M 6 HOH C 14 514 1 HOH HOH . M 6 HOH C 15 515 16 HOH HOH . N 6 HOH D 1 501 26 HOH HOH . N 6 HOH D 2 502 37 HOH HOH . N 6 HOH D 3 503 8 HOH HOH . N 6 HOH D 4 504 34 HOH HOH . N 6 HOH D 5 505 38 HOH HOH . N 6 HOH D 6 506 23 HOH HOH . N 6 HOH D 7 507 18 HOH HOH . N 6 HOH D 8 508 2 HOH HOH . N 6 HOH D 9 509 14 HOH HOH . O 6 HOH E 1 501 6 HOH HOH . P 6 HOH F 1 501 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x -12.121 _atom_site.Cartn_y 8.855 _atom_site.Cartn_z -4.945 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 92.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #