data_5E4Z # _model_server_result.job_id yHnV6Rnw5hj6KAkWgV6vtQ _model_server_result.datetime_utc '2024-11-16 22:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5E4Z # _exptl.entry_id 5E4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5E4Z _cell.length_a 56.29 _cell.length_b 122.631 _cell.length_c 127.296 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -127.296 4 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -127.296 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 210 A LYS 210 1_555 E C4A PLP . A PLP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 D NA NA . A NA 403 1_555 F O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc2 D NA NA . A NA 403 1_555 F O HOH . A HOH 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc3 D NA NA . A NA 403 1_555 F O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 274 n n C1 C2 PEG sing 275 n n C1 H11 PEG sing 276 n n C1 H12 PEG sing 277 n n O1 HO1 PEG sing 278 n n C2 O2 PEG sing 279 n n C2 H21 PEG sing 280 n n C2 H22 PEG sing 281 n n O2 C3 PEG sing 282 n n C3 C4 PEG sing 283 n n C3 H31 PEG sing 284 n n C3 H32 PEG sing 285 n n C4 O4 PEG sing 286 n n C4 H41 PEG sing 287 n n C4 H42 PEG sing 288 n n O4 HO4 PEG sing 289 n n # _atom_sites.entry_id 5E4Z _atom_sites.fract_transf_matrix[1][1] 0.017765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 401 400 1PE 1PE . C 3 PEG A 1 402 1 PEG PEG . D 4 NA A 1 403 1 NA NA . E 5 PLP A 1 404 210 PLP PLP . F 6 HOH A 1 501 107 HOH HOH . F 6 HOH A 2 502 90 HOH HOH . F 6 HOH A 3 503 39 HOH HOH . F 6 HOH A 4 504 85 HOH HOH . F 6 HOH A 5 505 8 HOH HOH . F 6 HOH A 6 506 57 HOH HOH . F 6 HOH A 7 507 17 HOH HOH . F 6 HOH A 8 508 86 HOH HOH . F 6 HOH A 9 509 6 HOH HOH . F 6 HOH A 10 510 78 HOH HOH . F 6 HOH A 11 511 24 HOH HOH . F 6 HOH A 12 512 52 HOH HOH . F 6 HOH A 13 513 83 HOH HOH . F 6 HOH A 14 514 81 HOH HOH . F 6 HOH A 15 515 75 HOH HOH . F 6 HOH A 16 516 55 HOH HOH . F 6 HOH A 17 517 60 HOH HOH . F 6 HOH A 18 518 67 HOH HOH . F 6 HOH A 19 519 76 HOH HOH . F 6 HOH A 20 520 54 HOH HOH . F 6 HOH A 21 521 45 HOH HOH . F 6 HOH A 22 522 21 HOH HOH . F 6 HOH A 23 523 12 HOH HOH . F 6 HOH A 24 524 37 HOH HOH . F 6 HOH A 25 525 10 HOH HOH . F 6 HOH A 26 526 65 HOH HOH . F 6 HOH A 27 527 68 HOH HOH . F 6 HOH A 28 528 28 HOH HOH . F 6 HOH A 29 529 31 HOH HOH . F 6 HOH A 30 530 77 HOH HOH . F 6 HOH A 31 531 104 HOH HOH . F 6 HOH A 32 532 9 HOH HOH . F 6 HOH A 33 533 33 HOH HOH . F 6 HOH A 34 534 48 HOH HOH . F 6 HOH A 35 535 22 HOH HOH . F 6 HOH A 36 536 11 HOH HOH . F 6 HOH A 37 537 49 HOH HOH . F 6 HOH A 38 538 56 HOH HOH . F 6 HOH A 39 539 5 HOH HOH . F 6 HOH A 40 540 63 HOH HOH . F 6 HOH A 41 541 91 HOH HOH . F 6 HOH A 42 542 64 HOH HOH . F 6 HOH A 43 543 59 HOH HOH . F 6 HOH A 44 544 46 HOH HOH . F 6 HOH A 45 545 27 HOH HOH . F 6 HOH A 46 546 29 HOH HOH . F 6 HOH A 47 547 38 HOH HOH . F 6 HOH A 48 548 20 HOH HOH . F 6 HOH A 49 549 98 HOH HOH . F 6 HOH A 50 550 16 HOH HOH . F 6 HOH A 51 551 19 HOH HOH . F 6 HOH A 52 552 14 HOH HOH . F 6 HOH A 53 553 13 HOH HOH . F 6 HOH A 54 554 35 HOH HOH . F 6 HOH A 55 555 71 HOH HOH . F 6 HOH A 56 556 18 HOH HOH . F 6 HOH A 57 557 23 HOH HOH . F 6 HOH A 58 558 51 HOH HOH . F 6 HOH A 59 559 43 HOH HOH . F 6 HOH A 60 560 70 HOH HOH . F 6 HOH A 61 561 30 HOH HOH . F 6 HOH A 62 562 66 HOH HOH . F 6 HOH A 63 563 41 HOH HOH . F 6 HOH A 64 564 69 HOH HOH . F 6 HOH A 65 565 36 HOH HOH . F 6 HOH A 66 566 89 HOH HOH . F 6 HOH A 67 567 94 HOH HOH . F 6 HOH A 68 568 34 HOH HOH . F 6 HOH A 69 569 79 HOH HOH . F 6 HOH A 70 570 1 HOH HOH . F 6 HOH A 71 571 58 HOH HOH . F 6 HOH A 72 572 102 HOH HOH . F 6 HOH A 73 573 15 HOH HOH . F 6 HOH A 74 574 2 HOH HOH . F 6 HOH A 75 575 50 HOH HOH . F 6 HOH A 76 576 72 HOH HOH . F 6 HOH A 77 577 32 HOH HOH . F 6 HOH A 78 578 42 HOH HOH . F 6 HOH A 79 579 95 HOH HOH . F 6 HOH A 80 580 44 HOH HOH . F 6 HOH A 81 581 7 HOH HOH . F 6 HOH A 82 582 40 HOH HOH . F 6 HOH A 83 583 26 HOH HOH . F 6 HOH A 84 584 84 HOH HOH . F 6 HOH A 85 585 62 HOH HOH . F 6 HOH A 86 586 3 HOH HOH . F 6 HOH A 87 587 87 HOH HOH . F 6 HOH A 88 588 82 HOH HOH . F 6 HOH A 89 589 108 HOH HOH . F 6 HOH A 90 590 80 HOH HOH . F 6 HOH A 91 591 93 HOH HOH . F 6 HOH A 92 592 74 HOH HOH . F 6 HOH A 93 593 73 HOH HOH . F 6 HOH A 94 594 25 HOH HOH . F 6 HOH A 95 595 4 HOH HOH . F 6 HOH A 96 596 101 HOH HOH . F 6 HOH A 97 597 97 HOH HOH . F 6 HOH A 98 598 103 HOH HOH . F 6 HOH A 99 599 106 HOH HOH . F 6 HOH A 100 600 96 HOH HOH . F 6 HOH A 101 601 47 HOH HOH . F 6 HOH A 102 602 99 HOH HOH . F 6 HOH A 103 603 88 HOH HOH . F 6 HOH A 104 604 105 HOH HOH . F 6 HOH A 105 605 61 HOH HOH . F 6 HOH A 106 606 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 -9.384 1 -29.473 1 58.27 ? C1 PEG 402 A 1 HETATM 2 O O1 PEG . . . C 3 -10.598 0.318 -29.095 1 54.41 ? O1 PEG 402 A 1 HETATM 3 C C2 PEG . . . C 3 -8.349 0.992 -28.338 1 56.58 ? C2 PEG 402 A 1 HETATM 4 O O2 PEG . . . C 3 -7.247 0.109 -28.608 1 56.71 ? O2 PEG 402 A 1 HETATM 5 C C3 PEG . . . C 3 -6.617 -0.357 -27.406 1 55.08 ? C3 PEG 402 A 1 HETATM 6 C C4 PEG . . . C 3 -5.76 -1.593 -27.682 1 50.66 ? C4 PEG 402 A 1 HETATM 7 O O4 PEG . . . C 3 -5.869 -2.57 -26.627 1 49.06 ? O4 PEG 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #