data_5E51 # _model_server_result.job_id MxFTrBT9z0DKgAZj9bDIyg _model_server_result.datetime_utc '2024-11-23 10:28:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5E51 # _exptl.entry_id 5E51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3-hydroxybutanal _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5E51 _cell.length_a 58.379 _cell.length_b 58.379 _cell.length_c 257.397 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G 1 1 B,H 2 1 C,F,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 198 A CYS 226 1_555 E C02 5KO . A 5KO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? covale ? covale2 C SG CYS 198 C CYS 226 1_555 F C02 5KO . C 5KO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id 5KO _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-hydroxybutanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Faropenem adduct' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O05 C04 5KO sing 1 n n C04 C06 5KO sing 2 n n C04 C03 5KO sing 3 n n C03 C02 5KO sing 4 n n C02 O01 5KO doub 5 n n C03 H2 5KO sing 6 n n C03 H3 5KO sing 7 n n C04 H4 5KO sing 8 n n O05 H5 5KO sing 9 n n C06 H6 5KO sing 10 n n C06 H7 5KO sing 11 n n C06 H8 5KO sing 12 n n C02 H1 5KO sing 13 n n # _atom_sites.entry_id 5E51 _atom_sites.fract_transf_matrix[1][1] 0.017129 _atom_sites.fract_transf_matrix[1][2] 0.00989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 5KO A 1 301 1 5KO F08 . F 2 5KO C 1 301 2 5KO F08 . G 3 HOH A 1 401 29 HOH HOH . G 3 HOH A 2 402 22 HOH HOH . G 3 HOH A 3 403 109 HOH HOH . G 3 HOH A 4 404 13 HOH HOH . G 3 HOH A 5 405 126 HOH HOH . G 3 HOH A 6 406 14 HOH HOH . G 3 HOH A 7 407 25 HOH HOH . G 3 HOH A 8 408 32 HOH HOH . G 3 HOH A 9 409 132 HOH HOH . G 3 HOH A 10 410 71 HOH HOH . G 3 HOH A 11 411 92 HOH HOH . G 3 HOH A 12 412 7 HOH HOH . G 3 HOH A 13 413 26 HOH HOH . G 3 HOH A 14 414 52 HOH HOH . G 3 HOH A 15 415 8 HOH HOH . G 3 HOH A 16 416 97 HOH HOH . G 3 HOH A 17 417 153 HOH HOH . G 3 HOH A 18 418 125 HOH HOH . G 3 HOH A 19 419 145 HOH HOH . G 3 HOH A 20 420 38 HOH HOH . G 3 HOH A 21 421 128 HOH HOH . G 3 HOH A 22 422 134 HOH HOH . G 3 HOH A 23 423 138 HOH HOH . G 3 HOH A 24 424 59 HOH HOH . G 3 HOH A 25 425 9 HOH HOH . G 3 HOH A 26 426 57 HOH HOH . G 3 HOH A 27 427 43 HOH HOH . G 3 HOH A 28 428 101 HOH HOH . G 3 HOH A 29 429 86 HOH HOH . G 3 HOH A 30 430 98 HOH HOH . H 3 HOH B 1 301 82 HOH HOH . H 3 HOH B 2 302 95 HOH HOH . H 3 HOH B 3 303 56 HOH HOH . H 3 HOH B 4 304 53 HOH HOH . H 3 HOH B 5 305 23 HOH HOH . H 3 HOH B 6 306 12 HOH HOH . H 3 HOH B 7 307 66 HOH HOH . H 3 HOH B 8 308 105 HOH HOH . H 3 HOH B 9 309 146 HOH HOH . H 3 HOH B 10 310 123 HOH HOH . H 3 HOH B 11 311 36 HOH HOH . H 3 HOH B 12 312 113 HOH HOH . H 3 HOH B 13 313 148 HOH HOH . H 3 HOH B 14 314 107 HOH HOH . H 3 HOH B 15 315 76 HOH HOH . H 3 HOH B 16 316 1 HOH HOH . H 3 HOH B 17 317 100 HOH HOH . H 3 HOH B 18 318 103 HOH HOH . H 3 HOH B 19 319 106 HOH HOH . I 3 HOH C 1 401 120 HOH HOH . I 3 HOH C 2 402 62 HOH HOH . I 3 HOH C 3 403 94 HOH HOH . I 3 HOH C 4 404 93 HOH HOH . I 3 HOH C 5 405 118 HOH HOH . I 3 HOH C 6 406 34 HOH HOH . I 3 HOH C 7 407 90 HOH HOH . I 3 HOH C 8 408 33 HOH HOH . I 3 HOH C 9 409 78 HOH HOH . I 3 HOH C 10 410 17 HOH HOH . I 3 HOH C 11 411 115 HOH HOH . I 3 HOH C 12 412 61 HOH HOH . I 3 HOH C 13 413 3 HOH HOH . I 3 HOH C 14 414 19 HOH HOH . I 3 HOH C 15 415 124 HOH HOH . I 3 HOH C 16 416 63 HOH HOH . I 3 HOH C 17 417 10 HOH HOH . I 3 HOH C 18 418 48 HOH HOH . I 3 HOH C 19 419 58 HOH HOH . I 3 HOH C 20 420 108 HOH HOH . I 3 HOH C 21 421 130 HOH HOH . I 3 HOH C 22 422 88 HOH HOH . I 3 HOH C 23 423 77 HOH HOH . I 3 HOH C 24 424 28 HOH HOH . I 3 HOH C 25 425 46 HOH HOH . I 3 HOH C 26 426 151 HOH HOH . I 3 HOH C 27 427 70 HOH HOH . I 3 HOH C 28 428 83 HOH HOH . I 3 HOH C 29 429 140 HOH HOH . I 3 HOH C 30 430 147 HOH HOH . I 3 HOH C 31 431 110 HOH HOH . I 3 HOH C 32 432 131 HOH HOH . I 3 HOH C 33 433 42 HOH HOH . I 3 HOH C 34 434 73 HOH HOH . I 3 HOH C 35 435 44 HOH HOH . I 3 HOH C 36 436 84 HOH HOH . I 3 HOH C 37 437 116 HOH HOH . I 3 HOH C 38 438 64 HOH HOH . I 3 HOH C 39 439 41 HOH HOH . J 3 HOH D 1 301 152 HOH HOH . J 3 HOH D 2 302 67 HOH HOH . J 3 HOH D 3 303 137 HOH HOH . J 3 HOH D 4 304 45 HOH HOH . J 3 HOH D 5 305 150 HOH HOH . J 3 HOH D 6 306 149 HOH HOH . J 3 HOH D 7 307 112 HOH HOH . J 3 HOH D 8 308 21 HOH HOH . J 3 HOH D 9 309 85 HOH HOH . J 3 HOH D 10 310 79 HOH HOH . J 3 HOH D 11 311 27 HOH HOH . J 3 HOH D 12 312 55 HOH HOH . J 3 HOH D 13 313 51 HOH HOH . J 3 HOH D 14 314 30 HOH HOH . J 3 HOH D 15 315 24 HOH HOH . J 3 HOH D 16 316 47 HOH HOH . J 3 HOH D 17 317 49 HOH HOH . J 3 HOH D 18 318 104 HOH HOH . J 3 HOH D 19 319 119 HOH HOH . J 3 HOH D 20 320 11 HOH HOH . J 3 HOH D 21 321 16 HOH HOH . J 3 HOH D 22 322 74 HOH HOH . J 3 HOH D 23 323 142 HOH HOH . J 3 HOH D 24 324 31 HOH HOH . J 3 HOH D 25 325 102 HOH HOH . J 3 HOH D 26 326 35 HOH HOH . J 3 HOH D 27 327 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5KO . . . E 2 -20.993 8.423 56.889 1 20.23 ? O01 5KO 301 A 1 HETATM 2 C C02 5KO . . . E 2 -21.461 9.417 56.387 1 21.88 ? C02 5KO 301 A 1 HETATM 3 C C03 5KO . . . E 2 -21.069 9.766 54.963 1 26.98 ? C03 5KO 301 A 1 HETATM 4 C C04 5KO . . . E 2 -22.225 9.811 53.993 1 21.36 ? C04 5KO 301 A 1 HETATM 5 O O05 5KO . . . E 2 -22.645 11.134 53.906 1 22.99 ? O05 5KO 301 A 1 HETATM 6 C C06 5KO . . . E 2 -23.383 8.962 54.46 1 21.86 ? C06 5KO 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #