data_5E5D # _model_server_result.job_id REtKm6sS-Ah8L20id_Dyzg _model_server_result.datetime_utc '2024-12-04 00:30:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5e5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5E5D # _exptl.entry_id 5E5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5E5D _cell.length_a 58.968 _cell.length_b 58.968 _cell.length_c 266.285 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 78 A GLU 37 1_555 D CD CD . A CD 203 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A NE2 HIS 84 A HIS 43 1_555 B CD CD . A CD 201 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A SG CYS 140 A CYS 99 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A OE1 GLU 169 A GLU 128 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc5 A OE1 GLU 171 A GLU 130 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 A OE2 GLU 171 A GLU 130 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc7 A OE1 GLU 173 A GLU 132 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc8 A NE2 HIS 182 A HIS 141 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 A NE2 HIS 186 A HIS 145 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc10 B CD CD . A CD 201 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc11 B CD CD . A CD 201 1_555 E O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc12 C CD CD . A CD 202 1_555 E O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc13 D CD CD . A CD 203 1_555 E O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5E5D _atom_sites.fract_transf_matrix[1][1] 0.016958 _atom_sites.fract_transf_matrix[1][2] 0.009791 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 172 CD CD . C 2 CD A 1 202 173 CD CD . D 2 CD A 1 203 174 CD CD . E 3 HOH A 1 301 216 HOH HOH . E 3 HOH A 2 302 209 HOH HOH . E 3 HOH A 3 303 234 HOH HOH . E 3 HOH A 4 304 195 HOH HOH . E 3 HOH A 5 305 255 HOH HOH . E 3 HOH A 6 306 210 HOH HOH . E 3 HOH A 7 307 181 HOH HOH . E 3 HOH A 8 308 220 HOH HOH . E 3 HOH A 9 309 282 HOH HOH . E 3 HOH A 10 310 177 HOH HOH . E 3 HOH A 11 311 260 HOH HOH . E 3 HOH A 12 312 179 HOH HOH . E 3 HOH A 13 313 212 HOH HOH . E 3 HOH A 14 314 226 HOH HOH . E 3 HOH A 15 315 180 HOH HOH . E 3 HOH A 16 316 233 HOH HOH . E 3 HOH A 17 317 285 HOH HOH . E 3 HOH A 18 318 235 HOH HOH . E 3 HOH A 19 319 176 HOH HOH . E 3 HOH A 20 320 182 HOH HOH . E 3 HOH A 21 321 283 HOH HOH . E 3 HOH A 22 322 270 HOH HOH . E 3 HOH A 23 323 284 HOH HOH . E 3 HOH A 24 324 217 HOH HOH . E 3 HOH A 25 325 281 HOH HOH . E 3 HOH A 26 326 257 HOH HOH . E 3 HOH A 27 327 263 HOH HOH . E 3 HOH A 28 328 245 HOH HOH . E 3 HOH A 29 329 214 HOH HOH . E 3 HOH A 30 330 183 HOH HOH . E 3 HOH A 31 331 288 HOH HOH . E 3 HOH A 32 332 256 HOH HOH . E 3 HOH A 33 333 188 HOH HOH . E 3 HOH A 34 334 206 HOH HOH . E 3 HOH A 35 335 222 HOH HOH . E 3 HOH A 36 336 187 HOH HOH . E 3 HOH A 37 337 266 HOH HOH . E 3 HOH A 38 338 232 HOH HOH . E 3 HOH A 39 339 213 HOH HOH . E 3 HOH A 40 340 229 HOH HOH . E 3 HOH A 41 341 207 HOH HOH . E 3 HOH A 42 342 199 HOH HOH . E 3 HOH A 43 343 250 HOH HOH . E 3 HOH A 44 344 238 HOH HOH . E 3 HOH A 45 345 197 HOH HOH . E 3 HOH A 46 346 189 HOH HOH . E 3 HOH A 47 347 218 HOH HOH . E 3 HOH A 48 348 194 HOH HOH . E 3 HOH A 49 349 186 HOH HOH . E 3 HOH A 50 350 249 HOH HOH . E 3 HOH A 51 351 279 HOH HOH . E 3 HOH A 52 352 262 HOH HOH . E 3 HOH A 53 353 276 HOH HOH . E 3 HOH A 54 354 184 HOH HOH . E 3 HOH A 55 355 202 HOH HOH . E 3 HOH A 56 356 190 HOH HOH . E 3 HOH A 57 357 286 HOH HOH . E 3 HOH A 58 358 200 HOH HOH . E 3 HOH A 59 359 287 HOH HOH . E 3 HOH A 60 360 264 HOH HOH . E 3 HOH A 61 361 230 HOH HOH . E 3 HOH A 62 362 254 HOH HOH . E 3 HOH A 63 363 185 HOH HOH . E 3 HOH A 64 364 258 HOH HOH . E 3 HOH A 65 365 261 HOH HOH . E 3 HOH A 66 366 203 HOH HOH . E 3 HOH A 67 367 253 HOH HOH . E 3 HOH A 68 368 208 HOH HOH . E 3 HOH A 69 369 268 HOH HOH . E 3 HOH A 70 370 236 HOH HOH . E 3 HOH A 71 371 192 HOH HOH . E 3 HOH A 72 372 191 HOH HOH . E 3 HOH A 73 373 196 HOH HOH . E 3 HOH A 74 374 178 HOH HOH . E 3 HOH A 75 375 271 HOH HOH . E 3 HOH A 76 376 244 HOH HOH . E 3 HOH A 77 377 241 HOH HOH . E 3 HOH A 78 378 227 HOH HOH . E 3 HOH A 79 379 237 HOH HOH . E 3 HOH A 80 380 265 HOH HOH . E 3 HOH A 81 381 272 HOH HOH . E 3 HOH A 82 382 239 HOH HOH . E 3 HOH A 83 383 267 HOH HOH . E 3 HOH A 84 384 275 HOH HOH . E 3 HOH A 85 385 221 HOH HOH . E 3 HOH A 86 386 225 HOH HOH . E 3 HOH A 87 387 211 HOH HOH . E 3 HOH A 88 388 247 HOH HOH . E 3 HOH A 89 389 198 HOH HOH . E 3 HOH A 90 390 240 HOH HOH . E 3 HOH A 91 391 273 HOH HOH . E 3 HOH A 92 392 243 HOH HOH . E 3 HOH A 93 393 193 HOH HOH . E 3 HOH A 94 394 205 HOH HOH . E 3 HOH A 95 395 252 HOH HOH . E 3 HOH A 96 396 201 HOH HOH . E 3 HOH A 97 397 242 HOH HOH . E 3 HOH A 98 398 269 HOH HOH . E 3 HOH A 99 399 231 HOH HOH . E 3 HOH A 100 400 175 HOH HOH . E 3 HOH A 101 401 280 HOH HOH . E 3 HOH A 102 402 1 HOH HOH . E 3 HOH A 103 403 251 HOH HOH . E 3 HOH A 104 404 215 HOH HOH . E 3 HOH A 105 405 224 HOH HOH . E 3 HOH A 106 406 219 HOH HOH . E 3 HOH A 107 407 246 HOH HOH . E 3 HOH A 108 408 204 HOH HOH . E 3 HOH A 109 409 289 HOH HOH . E 3 HOH A 110 410 277 HOH HOH . E 3 HOH A 111 411 248 HOH HOH . E 3 HOH A 112 412 223 HOH HOH . E 3 HOH A 113 413 259 HOH HOH . E 3 HOH A 114 414 274 HOH HOH . E 3 HOH A 115 415 278 HOH HOH . E 3 HOH A 116 416 228 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.57 _atom_site.Cartn_y -28.748 _atom_site.Cartn_z -10.58 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 99.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #