data_5E5M
#
_model_server_result.job_id            1-vriTAA3rlyefehZ4qZeA 
_model_server_result.datetime_utc      '2025-02-27 01:08:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e5m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    5E5M 
#
_exptl.entry_id    5E5M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5E5M 
_cell.length_a            78.22 
_cell.length_b            111.572 
_cell.length_c            112.881 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E5M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K 1 1 
C,D,L,M 2 1 
E,F,N,O 3 1 
G,H,P,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 A CYS 21 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 48 A CYS 48 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf3 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 C SG CYS 21 C CYS 21 1_555 C SG CYS 92 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 C SG CYS 48 C CYS 48 1_555 C SG CYS 66 C CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 D SG CYS 24 D CYS 24 1_555 D SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf7 E SG CYS 21 E CYS 21 1_555 E SG CYS 92 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 E SG CYS 48 E CYS 48 1_555 E SG CYS 66 E CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 F SG CYS 24 F CYS 24 1_555 F SG CYS 98 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 G SG CYS 21 G CYS 21 1_555 G SG CYS 92 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf11 G SG CYS 48 G CYS 48 1_555 G SG CYS 66 G CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf12 H SG CYS 24 H CYS 24 1_555 H SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5E5M 
_atom_sites.fract_transf_matrix[1][1]    0.012784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008859 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL A 1 201 1 GOL GOL . 
J 4 HOH A 1 301 17 HOH HOH . 
J 4 HOH A 2 302 1 HOH HOH . 
J 4 HOH A 3 303 7 HOH HOH . 
J 4 HOH A 4 304 80 HOH HOH . 
J 4 HOH A 5 305 12 HOH HOH . 
J 4 HOH A 6 306 50 HOH HOH . 
J 4 HOH A 7 307 43 HOH HOH . 
J 4 HOH A 8 308 51 HOH HOH . 
J 4 HOH A 9 309 37 HOH HOH . 
J 4 HOH A 10 310 8 HOH HOH . 
J 4 HOH A 11 311 40 HOH HOH . 
J 4 HOH A 12 312 99 HOH HOH . 
J 4 HOH A 13 313 20 HOH HOH . 
J 4 HOH A 14 314 72 HOH HOH . 
J 4 HOH A 15 315 15 HOH HOH . 
J 4 HOH A 16 316 89 HOH HOH . 
J 4 HOH A 17 317 24 HOH HOH . 
J 4 HOH A 18 318 87 HOH HOH . 
J 4 HOH A 19 319 95 HOH HOH . 
J 4 HOH A 20 320 16 HOH HOH . 
K 4 HOH B 1 201 56 HOH HOH . 
K 4 HOH B 2 202 35 HOH HOH . 
K 4 HOH B 3 203 5 HOH HOH . 
K 4 HOH B 4 204 88 HOH HOH . 
L 4 HOH C 1 201 14 HOH HOH . 
L 4 HOH C 2 202 60 HOH HOH . 
L 4 HOH C 3 203 30 HOH HOH . 
L 4 HOH C 4 204 78 HOH HOH . 
L 4 HOH C 5 205 58 HOH HOH . 
L 4 HOH C 6 206 44 HOH HOH . 
L 4 HOH C 7 207 36 HOH HOH . 
L 4 HOH C 8 208 77 HOH HOH . 
L 4 HOH C 9 209 45 HOH HOH . 
L 4 HOH C 10 210 41 HOH HOH . 
L 4 HOH C 11 211 34 HOH HOH . 
L 4 HOH C 12 212 49 HOH HOH . 
M 4 HOH D 1 201 55 HOH HOH . 
M 4 HOH D 2 202 75 HOH HOH . 
M 4 HOH D 3 203 82 HOH HOH . 
M 4 HOH D 4 204 84 HOH HOH . 
M 4 HOH D 5 205 18 HOH HOH . 
M 4 HOH D 6 206 4 HOH HOH . 
M 4 HOH D 7 207 21 HOH HOH . 
M 4 HOH D 8 208 63 HOH HOH . 
M 4 HOH D 9 209 10 HOH HOH . 
M 4 HOH D 10 210 19 HOH HOH . 
M 4 HOH D 11 211 13 HOH HOH . 
M 4 HOH D 12 212 52 HOH HOH . 
N 4 HOH E 1 201 38 HOH HOH . 
N 4 HOH E 2 202 68 HOH HOH . 
N 4 HOH E 3 203 26 HOH HOH . 
N 4 HOH E 4 204 57 HOH HOH . 
N 4 HOH E 5 205 91 HOH HOH . 
N 4 HOH E 6 206 39 HOH HOH . 
N 4 HOH E 7 207 66 HOH HOH . 
O 4 HOH F 1 201 81 HOH HOH . 
O 4 HOH F 2 202 53 HOH HOH . 
O 4 HOH F 3 203 27 HOH HOH . 
O 4 HOH F 4 204 33 HOH HOH . 
P 4 HOH G 1 201 2 HOH HOH . 
P 4 HOH G 2 202 3 HOH HOH . 
P 4 HOH G 3 203 22 HOH HOH . 
P 4 HOH G 4 204 6 HOH HOH . 
P 4 HOH G 5 205 23 HOH HOH . 
P 4 HOH G 6 206 29 HOH HOH . 
P 4 HOH G 7 207 83 HOH HOH . 
P 4 HOH G 8 208 47 HOH HOH . 
P 4 HOH G 9 209 11 HOH HOH . 
P 4 HOH G 10 210 48 HOH HOH . 
P 4 HOH G 11 211 86 HOH HOH . 
P 4 HOH G 12 212 42 HOH HOH . 
P 4 HOH G 13 213 9 HOH HOH . 
P 4 HOH G 14 214 102 HOH HOH . 
Q 4 HOH H 1 201 67 HOH HOH . 
Q 4 HOH H 2 202 28 HOH HOH . 
Q 4 HOH H 3 203 25 HOH HOH . 
Q 4 HOH H 4 204 70 HOH HOH . 
Q 4 HOH H 5 205 71 HOH HOH . 
Q 4 HOH H 6 206 62 HOH HOH . 
Q 4 HOH H 7 207 90 HOH HOH . 
Q 4 HOH H 8 208 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 27.84 58.976 47.588 1 81.27 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . I 3 27.389 57.639 47.637 1 77.45 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . I 3 29.005 59.122 46.611 1 86.6 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . I 3 29.364 57.864 46.086 1 86.68 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . I 3 28.606 60.06 45.47 1 86.41 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . I 3 29.739 60.687 44.903 1 82.27 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#