data_5E6H
#
_model_server_result.job_id            qkQK568xkiu9i6M2-TRTQw 
_model_server_result.datetime_utc      '2024-11-07 05:58:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e6h 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
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_entry.id    5E6H 
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_exptl.entry_id    5E6H 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          92.55 
_cell.angle_gamma         90 
_cell.entry_id            5E6H 
_cell.length_a            115.365 
_cell.length_b            61.591 
_cell.length_c            46.583 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5E6H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc4 B MN MN . A MN 601 1_555 C O1 AKG . A AKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc5 B MN MN . A MN 601 1_555 C O5 AKG . A AKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 B MN MN . A MN 601 1_555 F O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     5E6H 
_atom_sites.fract_transf_matrix[1][1]    0.008668 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000386 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016236 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 601 1 MN MN . 
C 3 AKG A 1 602 2 AKG AKG . 
D 4 GOL A 1 603 2 GOL GOL . 
E 4 GOL A 1 604 4 GOL GOL . 
F 5 HOH A 1 701 32 HOH HOH . 
F 5 HOH A 2 702 72 HOH HOH . 
F 5 HOH A 3 703 12 HOH HOH . 
F 5 HOH A 4 704 88 HOH HOH . 
F 5 HOH A 5 705 92 HOH HOH . 
F 5 HOH A 6 706 84 HOH HOH . 
F 5 HOH A 7 707 30 HOH HOH . 
F 5 HOH A 8 708 150 HOH HOH . 
F 5 HOH A 9 709 68 HOH HOH . 
F 5 HOH A 10 710 55 HOH HOH . 
F 5 HOH A 11 711 11 HOH HOH . 
F 5 HOH A 12 712 8 HOH HOH . 
F 5 HOH A 13 713 59 HOH HOH . 
F 5 HOH A 14 714 79 HOH HOH . 
F 5 HOH A 15 715 3 HOH HOH . 
F 5 HOH A 16 716 80 HOH HOH . 
F 5 HOH A 17 717 52 HOH HOH . 
F 5 HOH A 18 718 152 HOH HOH . 
F 5 HOH A 19 719 45 HOH HOH . 
F 5 HOH A 20 720 156 HOH HOH . 
F 5 HOH A 21 721 27 HOH HOH . 
F 5 HOH A 22 722 154 HOH HOH . 
F 5 HOH A 23 723 108 HOH HOH . 
F 5 HOH A 24 724 19 HOH HOH . 
F 5 HOH A 25 725 9 HOH HOH . 
F 5 HOH A 26 726 70 HOH HOH . 
F 5 HOH A 27 727 56 HOH HOH . 
F 5 HOH A 28 728 29 HOH HOH . 
F 5 HOH A 29 729 165 HOH HOH . 
F 5 HOH A 30 730 17 HOH HOH . 
F 5 HOH A 31 731 6 HOH HOH . 
F 5 HOH A 32 732 63 HOH HOH . 
F 5 HOH A 33 733 61 HOH HOH . 
F 5 HOH A 34 734 18 HOH HOH . 
F 5 HOH A 35 735 38 HOH HOH . 
F 5 HOH A 36 736 34 HOH HOH . 
F 5 HOH A 37 737 2 HOH HOH . 
F 5 HOH A 38 738 65 HOH HOH . 
F 5 HOH A 39 739 54 HOH HOH . 
F 5 HOH A 40 740 164 HOH HOH . 
F 5 HOH A 41 741 16 HOH HOH . 
F 5 HOH A 42 742 51 HOH HOH . 
F 5 HOH A 43 743 49 HOH HOH . 
F 5 HOH A 44 744 151 HOH HOH . 
F 5 HOH A 45 745 159 HOH HOH . 
F 5 HOH A 46 746 21 HOH HOH . 
F 5 HOH A 47 747 47 HOH HOH . 
F 5 HOH A 48 748 5 HOH HOH . 
F 5 HOH A 49 749 33 HOH HOH . 
F 5 HOH A 50 750 4 HOH HOH . 
F 5 HOH A 51 751 39 HOH HOH . 
F 5 HOH A 52 752 162 HOH HOH . 
F 5 HOH A 53 753 67 HOH HOH . 
F 5 HOH A 54 754 14 HOH HOH . 
F 5 HOH A 55 755 15 HOH HOH . 
F 5 HOH A 56 756 82 HOH HOH . 
F 5 HOH A 57 757 43 HOH HOH . 
F 5 HOH A 58 758 7 HOH HOH . 
F 5 HOH A 59 759 35 HOH HOH . 
F 5 HOH A 60 760 149 HOH HOH . 
F 5 HOH A 61 761 158 HOH HOH . 
F 5 HOH A 62 762 81 HOH HOH . 
F 5 HOH A 63 763 24 HOH HOH . 
F 5 HOH A 64 764 133 HOH HOH . 
F 5 HOH A 65 765 1 HOH HOH . 
F 5 HOH A 66 766 23 HOH HOH . 
F 5 HOH A 67 767 13 HOH HOH . 
F 5 HOH A 68 768 22 HOH HOH . 
F 5 HOH A 69 769 135 HOH HOH . 
F 5 HOH A 70 770 20 HOH HOH . 
F 5 HOH A 71 771 140 HOH HOH . 
F 5 HOH A 72 772 130 HOH HOH . 
F 5 HOH A 73 773 71 HOH HOH . 
F 5 HOH A 74 774 76 HOH HOH . 
F 5 HOH A 75 775 10 HOH HOH . 
F 5 HOH A 76 776 148 HOH HOH . 
F 5 HOH A 77 777 161 HOH HOH . 
F 5 HOH A 78 778 160 HOH HOH . 
F 5 HOH A 79 779 78 HOH HOH . 
F 5 HOH A 80 780 50 HOH HOH . 
F 5 HOH A 81 781 127 HOH HOH . 
F 5 HOH A 82 782 95 HOH HOH . 
F 5 HOH A 83 783 138 HOH HOH . 
F 5 HOH A 84 784 167 HOH HOH . 
F 5 HOH A 85 785 91 HOH HOH . 
F 5 HOH A 86 786 147 HOH HOH . 
F 5 HOH A 87 787 64 HOH HOH . 
F 5 HOH A 88 788 155 HOH HOH . 
F 5 HOH A 89 789 153 HOH HOH . 
F 5 HOH A 90 790 46 HOH HOH . 
F 5 HOH A 91 791 83 HOH HOH . 
F 5 HOH A 92 792 73 HOH HOH . 
F 5 HOH A 93 793 41 HOH HOH . 
F 5 HOH A 94 794 166 HOH HOH . 
F 5 HOH A 95 795 66 HOH HOH . 
F 5 HOH A 96 796 113 HOH HOH . 
F 5 HOH A 97 797 85 HOH HOH . 
F 5 HOH A 98 798 146 HOH HOH . 
F 5 HOH A 99 799 42 HOH HOH . 
F 5 HOH A 100 800 107 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -23.441 
_atom_site.Cartn_y               17.237 
_atom_site.Cartn_z               1.483 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.74 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
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_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
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