data_5E6H
#
_model_server_result.job_id            Kw6giMw-YGE1aE2IWcTDCQ 
_model_server_result.datetime_utc      '2024-11-23 03:03:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5e6h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    5E6H 
#
_exptl.entry_id    5E6H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.55 
_cell.angle_gamma         90 
_cell.entry_id            5E6H 
_cell.length_a            115.365 
_cell.length_b            61.591 
_cell.length_c            46.583 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5E6H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc4 B MN MN . A MN 601 1_555 C O1 AKG . A AKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc5 B MN MN . A MN 601 1_555 C O5 AKG . A AKG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 B MN MN . A MN 601 1_555 F O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 144 n n 
C1 C2 GOL sing 145 n n 
C1 H11 GOL sing 146 n n 
C1 H12 GOL sing 147 n n 
O1 HO1 GOL sing 148 n n 
C2 O2 GOL sing 149 n n 
C2 C3 GOL sing 150 n n 
C2 H2 GOL sing 151 n n 
O2 HO2 GOL sing 152 n n 
C3 O3 GOL sing 153 n n 
C3 H31 GOL sing 154 n n 
C3 H32 GOL sing 155 n n 
O3 HO3 GOL sing 156 n n 
#
_atom_sites.entry_id                     5E6H 
_atom_sites.fract_transf_matrix[1][1]    0.008668 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000386 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016236 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 601 1 MN MN . 
C 3 AKG A 1 602 2 AKG AKG . 
D 4 GOL A 1 603 2 GOL GOL . 
E 4 GOL A 1 604 4 GOL GOL . 
F 5 HOH A 1 701 32 HOH HOH . 
F 5 HOH A 2 702 72 HOH HOH . 
F 5 HOH A 3 703 12 HOH HOH . 
F 5 HOH A 4 704 88 HOH HOH . 
F 5 HOH A 5 705 92 HOH HOH . 
F 5 HOH A 6 706 84 HOH HOH . 
F 5 HOH A 7 707 30 HOH HOH . 
F 5 HOH A 8 708 150 HOH HOH . 
F 5 HOH A 9 709 68 HOH HOH . 
F 5 HOH A 10 710 55 HOH HOH . 
F 5 HOH A 11 711 11 HOH HOH . 
F 5 HOH A 12 712 8 HOH HOH . 
F 5 HOH A 13 713 59 HOH HOH . 
F 5 HOH A 14 714 79 HOH HOH . 
F 5 HOH A 15 715 3 HOH HOH . 
F 5 HOH A 16 716 80 HOH HOH . 
F 5 HOH A 17 717 52 HOH HOH . 
F 5 HOH A 18 718 152 HOH HOH . 
F 5 HOH A 19 719 45 HOH HOH . 
F 5 HOH A 20 720 156 HOH HOH . 
F 5 HOH A 21 721 27 HOH HOH . 
F 5 HOH A 22 722 154 HOH HOH . 
F 5 HOH A 23 723 108 HOH HOH . 
F 5 HOH A 24 724 19 HOH HOH . 
F 5 HOH A 25 725 9 HOH HOH . 
F 5 HOH A 26 726 70 HOH HOH . 
F 5 HOH A 27 727 56 HOH HOH . 
F 5 HOH A 28 728 29 HOH HOH . 
F 5 HOH A 29 729 165 HOH HOH . 
F 5 HOH A 30 730 17 HOH HOH . 
F 5 HOH A 31 731 6 HOH HOH . 
F 5 HOH A 32 732 63 HOH HOH . 
F 5 HOH A 33 733 61 HOH HOH . 
F 5 HOH A 34 734 18 HOH HOH . 
F 5 HOH A 35 735 38 HOH HOH . 
F 5 HOH A 36 736 34 HOH HOH . 
F 5 HOH A 37 737 2 HOH HOH . 
F 5 HOH A 38 738 65 HOH HOH . 
F 5 HOH A 39 739 54 HOH HOH . 
F 5 HOH A 40 740 164 HOH HOH . 
F 5 HOH A 41 741 16 HOH HOH . 
F 5 HOH A 42 742 51 HOH HOH . 
F 5 HOH A 43 743 49 HOH HOH . 
F 5 HOH A 44 744 151 HOH HOH . 
F 5 HOH A 45 745 159 HOH HOH . 
F 5 HOH A 46 746 21 HOH HOH . 
F 5 HOH A 47 747 47 HOH HOH . 
F 5 HOH A 48 748 5 HOH HOH . 
F 5 HOH A 49 749 33 HOH HOH . 
F 5 HOH A 50 750 4 HOH HOH . 
F 5 HOH A 51 751 39 HOH HOH . 
F 5 HOH A 52 752 162 HOH HOH . 
F 5 HOH A 53 753 67 HOH HOH . 
F 5 HOH A 54 754 14 HOH HOH . 
F 5 HOH A 55 755 15 HOH HOH . 
F 5 HOH A 56 756 82 HOH HOH . 
F 5 HOH A 57 757 43 HOH HOH . 
F 5 HOH A 58 758 7 HOH HOH . 
F 5 HOH A 59 759 35 HOH HOH . 
F 5 HOH A 60 760 149 HOH HOH . 
F 5 HOH A 61 761 158 HOH HOH . 
F 5 HOH A 62 762 81 HOH HOH . 
F 5 HOH A 63 763 24 HOH HOH . 
F 5 HOH A 64 764 133 HOH HOH . 
F 5 HOH A 65 765 1 HOH HOH . 
F 5 HOH A 66 766 23 HOH HOH . 
F 5 HOH A 67 767 13 HOH HOH . 
F 5 HOH A 68 768 22 HOH HOH . 
F 5 HOH A 69 769 135 HOH HOH . 
F 5 HOH A 70 770 20 HOH HOH . 
F 5 HOH A 71 771 140 HOH HOH . 
F 5 HOH A 72 772 130 HOH HOH . 
F 5 HOH A 73 773 71 HOH HOH . 
F 5 HOH A 74 774 76 HOH HOH . 
F 5 HOH A 75 775 10 HOH HOH . 
F 5 HOH A 76 776 148 HOH HOH . 
F 5 HOH A 77 777 161 HOH HOH . 
F 5 HOH A 78 778 160 HOH HOH . 
F 5 HOH A 79 779 78 HOH HOH . 
F 5 HOH A 80 780 50 HOH HOH . 
F 5 HOH A 81 781 127 HOH HOH . 
F 5 HOH A 82 782 95 HOH HOH . 
F 5 HOH A 83 783 138 HOH HOH . 
F 5 HOH A 84 784 167 HOH HOH . 
F 5 HOH A 85 785 91 HOH HOH . 
F 5 HOH A 86 786 147 HOH HOH . 
F 5 HOH A 87 787 64 HOH HOH . 
F 5 HOH A 88 788 155 HOH HOH . 
F 5 HOH A 89 789 153 HOH HOH . 
F 5 HOH A 90 790 46 HOH HOH . 
F 5 HOH A 91 791 83 HOH HOH . 
F 5 HOH A 92 792 73 HOH HOH . 
F 5 HOH A 93 793 41 HOH HOH . 
F 5 HOH A 94 794 166 HOH HOH . 
F 5 HOH A 95 795 66 HOH HOH . 
F 5 HOH A 96 796 113 HOH HOH . 
F 5 HOH A 97 797 85 HOH HOH . 
F 5 HOH A 98 798 146 HOH HOH . 
F 5 HOH A 99 799 42 HOH HOH . 
F 5 HOH A 100 800 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -41.572 15.029 7.759 1 48.91 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . D 4 -41.342 14.078 6.744 1 42.08 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . D 4 -41.356 16.431 7.203 1 56.03 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . D 4 -41.525 16.414 5.804 1 61.13 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . D 4 -42.373 17.385 7.819 1 56.72 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . D 4 -42.15 18.688 7.329 1 54.64 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#